TMV resistance protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 798 |
| Acc16I | TGCGCA | 1 cut(s) | 578 |
| AccB1I | GGYRCC | 1 cut(s) | 429 |
| AciI | CCGC | 3 cut(s) | 33, 36, 388 |
| AclWI | GGATC | 2 cut(s) | 781, 1160 |
| AcoI | YGGCCR | 1 cut(s) | 1112 |
| AcsI | RAATTY | 2 cut(s) | 767, 1138 |
| AcyI | GRCGYC | 2 cut(s) | 430, 795 |
| AfaI | GTAC | 3 cut(s) | 453, 472, 609 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1177 |
| AflIII | ACRYGT | 1 cut(s) | 975 |
| AgeI | ACCGGT | 1 cut(s) | 1538 |
| AjnI | CCWGG | 1 cut(s) | 390 |
| AluBI | AGCT | 7 cut(s) | 118, 165, 589, 1193, 1265, 1288, 1496 |
| AluI | AGCT | 7 cut(s) | 118, 165, 589, 1193, 1265, 1288, 1496 |
| Alw26I | GTCTC | 5 cut(s) | 536, 669, 739, 913, 1529 |
| AlwI | GGATC | 2 cut(s) | 781, 1160 |
| AoxI | GGCC | 1 cut(s) | 1112 |
| ApeKI | GCWGC | 2 cut(s) | 1193, 1262 |
| ApoI | RAATTY | 2 cut(s) | 767, 1138 |
| AsiGI | ACCGGT | 1 cut(s) | 1538 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 861 |
| AspLEI | GCGC | 3 cut(s) | 432, 579, 1237 |
| AsuHPI | GGTGA | 4 cut(s) | 149, 331, 355, 1553 |
| BalI | TGGCCA | 1 cut(s) | 1114 |
| BanI | GGYRCC | 1 cut(s) | 429 |
| BbvI | GCAGC | 2 cut(s) | 1180, 1274 |
| BccI | CCATC | 7 cut(s) | 257, 603, 611, 645, 784, 1054, 1481 |
| BceAI | ACGGC | 1 cut(s) | 352 |
| BciT130I | CCWGG | 1 cut(s) | 392 |
| BclI | TGATCA | 1 cut(s) | 1201 |
| BcoDI | GTCTC | 5 cut(s) | 536, 669, 739, 913, 1529 |
| BfaI | CTAG | 3 cut(s) | 713, 851, 1167 |
| BfmI | CTRYAG | 1 cut(s) | 639 |
| BfoI | RGCGCY | 1 cut(s) | 433 |
| BisI | GCNGC | 3 cut(s) | 34, 1194, 1263 |
| BlsI | GCNGC | 3 cut(s) | 35, 1195, 1264 |
| BmcAI | AGTACT | 1 cut(s) | 453 |
| Bme1390I | CCNGG | 1 cut(s) | 392 |
| BmiI | GGNNCC | 1 cut(s) | 431 |
| BmrFI | CCNGG | 1 cut(s) | 392 |
| BmsI | GCATC | 6 cut(s) | 302, 520, 564, 951, 1395, 1509 |
| BoxI | GACNNNNGTC | 1 cut(s) | 925 |
| BsaHI | GRCGYC | 2 cut(s) | 430, 795 |
| BsaI | GGTCTC | 2 cut(s) | 669, 1529 |
| BsaJI | CCNNGG | 2 cut(s) | 484, 1226 |
| BsaWI | WCCGGW | 1 cut(s) | 1538 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 576, 606 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1177 |
| Bse118I | RCCGGY | 1 cut(s) | 1538 |
| Bse1I | ACTGG | 1 cut(s) | 618 |
| Bse3DI | GCAATG | 1 cut(s) | 210 |
| BseBI | CCWGG | 1 cut(s) | 392 |
| BseDI | CCNNGG | 2 cut(s) | 484, 1226 |
| BseGI | GGATG | 8 cut(s) | 272, 511, 622, 626, 966, 1340, 1428, 1524 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1177 |
| BseMI | GCAATG | 1 cut(s) | 210 |
| BseMII | CTCAG | 3 cut(s) | 399, 446, 1406 |
| BseNI | ACTGG | 1 cut(s) | 618 |
| BseXI | GCAGC | 2 cut(s) | 1180, 1274 |
| BsgI | GTGCAG | 1 cut(s) | 501 |
| BshFI | GGCC | 1 cut(s) | 1114 |
| BshNI | GGYRCC | 1 cut(s) | 429 |
| BshTI | ACCGGT | 1 cut(s) | 1538 |
| BsiSI | CCGG | 2 cut(s) | 1432, 1539 |
| BslFI | GGGAC | 3 cut(s) | 248, 1198, 1444 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1177 |
| BsmAI | GTCTC | 5 cut(s) | 536, 669, 739, 913, 1529 |
| BsmFI | GGGAC | 3 cut(s) | 248, 1198, 1444 |
| BsmI | GAATGC | 2 cut(s) | 7, 291 |
| BsnI | GGCC | 1 cut(s) | 1114 |
| Bso31I | GGTCTC | 2 cut(s) | 669, 1529 |
| Bsp143I | GATC | 3 cut(s) | 786, 1152, 1201 |
| Bsp19I | CCATGG | 1 cut(s) | 484 |
| BspACI | CCGC | 3 cut(s) | 33, 36, 388 |
| BspANI | GGCC | 1 cut(s) | 1114 |
| BspCNI | CTCAG | 3 cut(s) | 400, 447, 1405 |
| BspHI | TCATGA | 2 cut(s) | 144, 895 |
| BspLI | GGNNCC | 1 cut(s) | 431 |
| BspPI | GGATC | 2 cut(s) | 781, 1160 |
| BspQI | GCTCTTC | 1 cut(s) | 396 |
| BspT107I | GGYRCC | 1 cut(s) | 429 |
| BspTNI | GGTCTC | 2 cut(s) | 669, 1529 |
| BsrDI | GCAATG | 1 cut(s) | 210 |
| BsrFI | RCCGGY | 1 cut(s) | 1538 |
| BsrI | ACTGG | 1 cut(s) | 618 |
| BssAI | RCCGGY | 1 cut(s) | 1538 |
| BssECI | CCNNGG | 2 cut(s) | 484, 1226 |
| BssMI | GATC | 3 cut(s) | 786, 1152, 1201 |
| BssNI | GRCGYC | 2 cut(s) | 430, 795 |
| BssT1I | CCWWGG | 1 cut(s) | 484 |
| Bst2UI | CCWGG | 1 cut(s) | 392 |
| Bst4CI | ACNGT | 3 cut(s) | 173, 524, 737 |
| Bst6I | CTCTTC | 4 cut(s) | 370, 396, 911, 1322 |
| BstACI | GRCGYC | 2 cut(s) | 430, 795 |
| BstC8I | GCNNGC | 2 cut(s) | 1437, 1470 |
| BstDEI | CTNAG | 7 cut(s) | 155, 408, 455, 599, 956, 1392, 1555 |
| BstDSI | CCRYGG | 1 cut(s) | 484 |
| BstF5I | GGATG | 8 cut(s) | 272, 511, 622, 626, 966, 1340, 1428, 1524 |
| BstH2I | RGCGCY | 1 cut(s) | 433 |
| BstHHI | GCGC | 3 cut(s) | 432, 579, 1237 |
| BstKTI | GATC | 3 cut(s) | 789, 1155, 1204 |
| BstMAI | GTCTC | 5 cut(s) | 536, 669, 739, 913, 1529 |
| BstMBI | GATC | 3 cut(s) | 786, 1152, 1201 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1142, 1262 |
| BstNI | CCWGG | 1 cut(s) | 392 |
| BstNSI | RCATGY | 2 cut(s) | 979, 1345 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 925 |
| BstSCI | CCNGG | 1 cut(s) | 390 |
| BstSFI | CTRYAG | 1 cut(s) | 639 |
| BstV1I | GCAGC | 2 cut(s) | 1180, 1274 |
| BstX2I | RGATCY | 2 cut(s) | 786, 1152 |
| BstYI | RGATCY | 2 cut(s) | 786, 1152 |
| BsuRI | GGCC | 1 cut(s) | 1114 |
| BtgI | CCRYGG | 1 cut(s) | 484 |
| BtgZI | GCGATG | 1 cut(s) | 1372 |
| BtsCI | GGATG | 8 cut(s) | 272, 511, 622, 626, 966, 1340, 1428, 1524 |
| BtsI | GCAGTG | 1 cut(s) | 1047 |
| BtsIMutI | CAGTG | 3 cut(s) | 816, 1047, 1400 |
| Cac8I | GCNNGC | 2 cut(s) | 1437, 1470 |
| CciI | TCATGA | 2 cut(s) | 144, 895 |
| CfoI | GCGC | 3 cut(s) | 432, 579, 1237 |
| Cfr10I | RCCGGY | 1 cut(s) | 1538 |
| Csp6I | GTAC | 3 cut(s) | 452, 471, 608 |
| CspAI | ACCGGT | 1 cut(s) | 1538 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 197, 232 |
| CviQI | GTAC | 3 cut(s) | 452, 471, 608 |
| DdeI | CTNAG | 7 cut(s) | 155, 408, 455, 599, 956, 1392, 1555 |
| DinI | GGCGCC | 1 cut(s) | 431 |
| DpnI | GATC | 3 cut(s) | 788, 1154, 1203 |
| DpnII | GATC | 3 cut(s) | 786, 1152, 1201 |
| EaeI | YGGCCR | 1 cut(s) | 1112 |
| Eam1104I | CTCTTC | 4 cut(s) | 370, 396, 911, 1322 |
| EarI | CTCTTC | 4 cut(s) | 370, 396, 911, 1322 |
| EciI | GGCGGA | 2 cut(s) | 51, 377 |
| Eco130I | CCWWGG | 1 cut(s) | 484 |
| Eco31I | GGTCTC | 2 cut(s) | 669, 1529 |
| EcoRII | CCWGG | 1 cut(s) | 390 |
| EcoT14I | CCWWGG | 1 cut(s) | 484 |
| EcoT22I | ATGCAT | 3 cut(s) | 354, 513, 565 |
| EgeI | GGCGCC | 1 cut(s) | 431 |
| EheI | GGCGCC | 1 cut(s) | 431 |
| ErhI | CCWWGG | 1 cut(s) | 484 |
| FaqI | GGGAC | 3 cut(s) | 248, 1198, 1444 |
| FauNDI | CATATG | 3 cut(s) | 1280, 1484, 1531 |
| FbaI | TGATCA | 1 cut(s) | 1201 |
| Fnu4HI | GCNGC | 3 cut(s) | 34, 1194, 1263 |
| FokI | GGATG | 8 cut(s) | 279, 498, 629, 633, 973, 1347, 1415, 1531 |
| Fsp4HI | GCNGC | 3 cut(s) | 34, 1194, 1263 |
| FspBI | CTAG | 3 cut(s) | 713, 851, 1167 |
| FspI | TGCGCA | 1 cut(s) | 578 |
| GlaI | GCGC | 3 cut(s) | 431, 578, 1236 |
| GluI | GCNGC | 3 cut(s) | 34, 1194, 1263 |
| HaeII | RGCGCY | 1 cut(s) | 433 |
| HaeIII | GGCC | 1 cut(s) | 1114 |
| HapII | CCGG | 2 cut(s) | 1432, 1539 |
| HhaI | GCGC | 3 cut(s) | 432, 579, 1237 |
| Hin1I | GRCGYC | 2 cut(s) | 430, 795 |
| Hin6I | GCGC | 3 cut(s) | 430, 577, 1235 |
| HinP1I | GCGC | 3 cut(s) | 430, 577, 1235 |
| HinfI | GANTC | 9 cut(s) | 361, 395, 440, 480, 680, 862, 899, 952, 989 |
| HpaII | CCGG | 2 cut(s) | 1432, 1539 |
| HphI | GGTGA | 4 cut(s) | 149, 331, 355, 1553 |
| Hpy166II | GTNNAC | 2 cut(s) | 176, 1544 |
| Hpy188I | TCNGA | 3 cut(s) | 400, 1357, 1382 |
| Hpy188III | TCNNGA | 8 cut(s) | 145, 365, 722, 754, 851, 896, 1028, 1079 |
| Hpy8I | GTNNAC | 2 cut(s) | 176, 1544 |
| HpyAV | CCTTC | 2 cut(s) | 225, 934 |
| HpyCH4III | ACNGT | 3 cut(s) | 173, 524, 737 |
| HpyCH4IV | ACGT | 2 cut(s) | 415, 795 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1142, 1262 |
| HpyF3I | CTNAG | 7 cut(s) | 155, 408, 455, 599, 956, 1392, 1555 |
| HpySE526I | ACGT | 2 cut(s) | 415, 795 |
| Hsp92I | GRCGYC | 2 cut(s) | 430, 795 |
| HspAI | GCGC | 3 cut(s) | 430, 577, 1235 |
| KasI | GGCGCC | 1 cut(s) | 429 |
| Ksp22I | TGATCA | 1 cut(s) | 1201 |
| Kzo9I | GATC | 3 cut(s) | 786, 1152, 1201 |
| LguI | GCTCTTC | 1 cut(s) | 396 |
| LmnI | GCTCC | 2 cut(s) | 4, 1285 |
| Lsp1109I | GCAGC | 2 cut(s) | 1180, 1274 |
| LweI | GCATC | 6 cut(s) | 302, 520, 564, 951, 1395, 1509 |
| MaeI | CTAG | 3 cut(s) | 713, 851, 1167 |
| MaeII | ACGT | 2 cut(s) | 415, 795 |
| MaeIII | GTNAC | 4 cut(s) | 319, 365, 1337, 1424 |
| MalI | GATC | 3 cut(s) | 788, 1154, 1203 |
| MboI | GATC | 3 cut(s) | 786, 1152, 1201 |
| MboII | GAAGA | 9 cut(s) | 60, 387, 413, 764, 796, 866, 928, 1069, 1339 |
| MfeI | CAATTG | 2 cut(s) | 324, 690 |
| MflI | RGATCY | 2 cut(s) | 786, 1152 |
| MlsI | TGGCCA | 1 cut(s) | 1114 |
| MluNI | TGGCCA | 1 cut(s) | 1114 |
| Mly113I | GGCGCC | 1 cut(s) | 430 |
| MmeI | TCCRAC | 2 cut(s) | 1069, 1360 |
| MnlI | CCTC | 5 cut(s) | 215, 450, 1236, 1323, 1376 |
| Mox20I | TGGCCA | 1 cut(s) | 1114 |
| Mph1103I | ATGCAT | 3 cut(s) | 354, 513, 565 |
| MroXI | GAANNNNTTC | 1 cut(s) | 861 |
| MscI | TGGCCA | 1 cut(s) | 1114 |
| MseI | TTAA | 4 cut(s) | 647, 933, 1100, 1505 |
| MslI | CAYNNNNRTG | 1 cut(s) | 807 |
| Msp20I | TGGCCA | 1 cut(s) | 1114 |
| MspA1I | CMGCKG | 1 cut(s) | 1193 |
| MspI | CCGG | 2 cut(s) | 1432, 1539 |
| MspR9I | CCNGG | 1 cut(s) | 392 |
| MunI | CAATTG | 2 cut(s) | 324, 690 |
| Mva1269I | GAATGC | 2 cut(s) | 7, 291 |
| MvaI | CCWGG | 1 cut(s) | 392 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1142, 1262 |
| NarI | GGCGCC | 1 cut(s) | 430 |
| NcoI | CCATGG | 1 cut(s) | 484 |
| NdeI | CATATG | 3 cut(s) | 1280, 1484, 1531 |
| NdeII | GATC | 3 cut(s) | 786, 1152, 1201 |
| NlaIV | GGNNCC | 1 cut(s) | 431 |
| NmuCI | GTSAC | 3 cut(s) | 319, 365, 1337 |
| NsbI | TGCGCA | 1 cut(s) | 578 |
| NsiI | ATGCAT | 3 cut(s) | 354, 513, 565 |
| NspI | RCATGY | 2 cut(s) | 979, 1345 |
| PagI | TCATGA | 2 cut(s) | 144, 895 |
| PciI | ACATGT | 1 cut(s) | 975 |
| PciSI | GCTCTTC | 1 cut(s) | 396 |
| PctI | GAATGC | 2 cut(s) | 7, 291 |
| PdmI | GAANNNNTTC | 1 cut(s) | 861 |
| PfeI | GAWTC | 9 cut(s) | 361, 395, 440, 480, 680, 862, 899, 952, 989 |
| PinAI | ACCGGT | 1 cut(s) | 1538 |
| PkrI | GCNGC | 3 cut(s) | 35, 1195, 1264 |
| PluTI | GGCGCC | 1 cut(s) | 433 |
| PscI | ACATGT | 1 cut(s) | 975 |
| PshAI | GACNNNNGTC | 1 cut(s) | 925 |
| Psp6I | CCWGG | 1 cut(s) | 390 |
| PspGI | CCWGG | 1 cut(s) | 390 |
| PspN4I | GGNNCC | 1 cut(s) | 431 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1223, 1255 |
| PsuI | RGATCY | 2 cut(s) | 786, 1152 |
| PvuII | CAGCTG | 1 cut(s) | 1193 |
| RsaI | GTAC | 3 cut(s) | 453, 472, 609 |
| RsaNI | GTAC | 3 cut(s) | 452, 471, 608 |
| RseI | CAYNNNNRTG | 1 cut(s) | 807 |
| SapI | GCTCTTC | 1 cut(s) | 396 |
| SaqAI | TTAA | 4 cut(s) | 647, 933, 1100, 1505 |
| SatI | GCNGC | 3 cut(s) | 34, 1194, 1263 |
| Sau3AI | GATC | 3 cut(s) | 786, 1152, 1201 |
| ScaI | AGTACT | 1 cut(s) | 453 |
| ScrFI | CCNGG | 1 cut(s) | 392 |
| SfaNI | GCATC | 6 cut(s) | 302, 520, 564, 951, 1395, 1509 |
| SfcI | CTRYAG | 1 cut(s) | 639 |
| SfoI | GGCGCC | 1 cut(s) | 431 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 807 |
| SsiI | CCGC | 3 cut(s) | 33, 36, 388 |
| SspDI | GGCGCC | 1 cut(s) | 429 |
| SspMI | CTAG | 3 cut(s) | 713, 851, 1167 |
| StyD4I | CCNGG | 1 cut(s) | 390 |
| StyI | CCWWGG | 1 cut(s) | 484 |
| TaaI | ACNGT | 3 cut(s) | 173, 524, 737 |
| TaiI | ACGT | 2 cut(s) | 418, 798 |
| TaqI | TCGA | 2 cut(s) | 261, 1406 |
| TaqII | GACCGA | 1 cut(s) | 207 |
| TatI | WGTACW | 1 cut(s) | 451 |
| TauI | GCSGC | 1 cut(s) | 36 |
| TfiI | GAWTC | 9 cut(s) | 361, 395, 440, 480, 680, 862, 899, 952, 989 |
| Tru1I | TTAA | 4 cut(s) | 647, 933, 1100, 1505 |
| Tru9I | TTAA | 4 cut(s) | 647, 933, 1100, 1505 |
| TscAI | CASTG | 3 cut(s) | 823, 1047, 1400 |
| TseFI | GTSAC | 3 cut(s) | 319, 365, 1337 |
| TseI | GCWGC | 2 cut(s) | 1193, 1262 |
| Tsp45I | GTSAC | 3 cut(s) | 319, 365, 1337 |
| TspDTI | ATGAA | 6 cut(s) | 120, 161, 884, 912, 953, 1319 |
| TspGWI | ACGGA | 1 cut(s) | 1531 |
| TspRI | CASTG | 3 cut(s) | 823, 1047, 1400 |
| XapI | RAATTY | 2 cut(s) | 767, 1138 |
| XbaI | TCTAGA | 1 cut(s) | 850 |
| XceI | RCATGY | 2 cut(s) | 979, 1345 |
| XmnI | GAANNNNTTC | 1 cut(s) | 861 |
| XspI | CTAG | 3 cut(s) | 713, 851, 1167 |
| ZraI | GACGTC | 1 cut(s) | 796 |
| ZrmI | AGTACT | 1 cut(s) | 453 |
| Zsp2I | ATGCAT | 3 cut(s) | 354, 513, 565 |