Rmu_sc0000091.1_g000015

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000091.1
OG0000036
Physical Location & Seq
Reverse (-)
59981 .. 65679
5699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000091.1_g000015.1.cds

Sequence Viewer

Length: 3981 bp
atggtgaaccggtggcatatgtgctgcgacctatatggagcttctgatggctggttcgatgtatttccagccggttcttggggtggggccgccagttctggactcctgggatcgattccttcaaggtgtgaggtggaggtagaaaaggctttaaggttttgtattcggattaaaggtccatccatggatgctgctagctcatcatcatcagctcaacaagcttcgtcttccagtattcctcctactcaattcacatatcaagtgttcttgagtttcagaggcagaaacactcgcaagactttcaccgatcatctctacacagccctgaccactgcaggaatctgcactttccgagacgacgacgagctcccggccggagaagccatcaagccagaactagagagagccatccagcaatcgcgatgttctgttattgtgttttcaaaagactacgcgtcgtccggatggtgcctggacgagcttgtgacgatccttggatgcaagaagaggtccggtcagttcgttttaccgatctactacgacgtcagcccatcccaggtgaggaagcggacggggagtctcgcaaaggcgttcgtcacacaccagaagaatcaaacggcggaaaagctgattctgtggaaggaagcacttacagaagttgcggctctaggaggcatggtgttgaaggatcaagttgacgggcacgagtcaaaatttattgaaaatattgttaaggtgattgaaggcaagttatgtcgagttcccttatgtgttgccccttacctggttggaattgattctcgagtgaaaagcatcaatttatggttacaggatggatcgtccgatattggtatattaggaatttgtggaattggtggaataggaaagacaactattgcgcaaattgtttataattcaaattttgagagatttgaaagaagctgctttctcgaaaatatcagagagattttcgaacggccaagtggttttgttcaagtacagaaacagcttctttcggatattttgaatgggagaaaagtgaatataagcagtcctagcgagggaatgagtaaaataaaagatgccttaagctctaaaaaagttcttcttgttctcgatgatgtggatcacaaggacctagttgatgcaatacttgagatgaaaggctgcttttgttctgaaagtaaaattataataacaacaaggaatgcaggattgctcaagggtcatcgagatattaaggtgcataatgttgaaactttgaaccatattgaatcattggacctcttcagcaggcatgcttttggacacaaccaccctattgaaagttacgtgaaactttcagacagggtagtgcacgactgtgaaggacttccattagcccttcaaacattgggttcttctctctcagggaagactatagatgtatgggaaagcacattaaagaaatccaaaactattccaaacagtgtagtgatgagtaaactgaggatgagcttcaactctttacaagatgaccatgatcagagtttattcctccatattgcatgtttttttatcggaaaggacaaggatatcattgtcaaaattttagatgcatgtgatttctgcacaaccgttggcattcaaaatctcattgatagatatctggttagaattgaagaatgtaataaggtgaatatgcataaaatgatttgtgacatgggaagagaaatgattcgtctagaatcaaaagatcctaagaaacgtagtaggctatggcatcacaaggactctcttaatgcattaagagaaaagactggttctaatgcaattcaaggccttgtcctgaacatgcctgtgaaccctgcagatggtccttcaagaaattcagatatggtggtcttggataccaatgcattttcaatgatgaacaatctcagattccttcatcttggtcatgtacaactcaatggaagttatgaaaaatttcctaaaggattgagatggttgtgttggcacgaatgtcctttgaatttaataccgagtgattttcctatggagatgatggttgttattgaaatgtcctatggtagattgagacaagtgtggaagggagcaaagtgtcttccatcattgaagatctttgatctcagccattcctcaaaccttactgaaactggtgacttctcattggtccagaatctggagagacttatacttgaacattgtataagcttagttgatgtccatgaatccataggaaagctagagaaacttgtttacttgaatttgaaagattgcataaatatcatgaagcttccagagaacattcatatgttaaaatcacttgaaacacttattatatctggttgttcaaatcttagtgagtttccgatggagattagaaacatggaaactcttaaagtgtttcaagcatttggagttccaatagatcagctaatcactatccctgggcaggtaaattcatggccaagattaagtgtagatggtttttggggttccttttctggctctattgttgagttaaatcttggaagctgcaatctttttgatgatgcttttcctagtgattttgttaacttatcttcattggagagtttggatctcagctacaataacttttgtaccttgccagattcaatcagaggcctatgtaaactcaagatgcttaatcttcaatcctgtagaagtctcatgtcaattacaggtctaccacgagtaagagatctactgagtgcagaccattgtgtatccttggaaaaaataacatttcaatcactttcatgcataccgaagagagtatccatatatggtgactccaaactagttgagatacagcactggtacaagctaaaacccattggaacagttgatgtagaaatgatcaggcttttgggtttgtccaacttggaatccatggaacccattctgatgcacaccgcagatgcaaactccccatcggaaggggaatccatggaacccattcgcatccagggactacatgaatatggtatcttcagcacattctttccgggaaacggaaatgaggttccaggacagttcagccatacaagtaaagggtgttcctcaatatcttttcctgtgcctatacttcttaatcgcaatatccaaggcttcaacatatattctgtgtatgcatggatgacagatgttaatactctattgccaccattaatcattgaagtcaataataagagcacgggtctgaagtggatctatgtgccgtcatgttacggcattccaagtgatggaaaagacatgatatggttaagccattggagtttggggaaccaattcaaaaatggcgatgtagtcactgtctcagtatttacaccagataactggcttcaggtaaaagagttcggtgtccaagtggtgcatgaggaagaagagaagatgagtaagcaacagtacagcagcaatagtagagatcctagttatgatgatcccgatgcttgtggtgttaatgaggtgattggtaatagtggtggagatttgtcagagttatatcaggtcaggccagggacatacttcctctgcggtggaccctttttagaaaataatagatacacatataacagatggaaaaaggattgttgcctcagtggcatcataagagagtatgatgaagaaacagacaacgaagaaaggaaacagggggataggacactagcagcaacacaagaagctgaagcagaaagaggcggcagcaatgaattctttggttgcaagaactttgttatccatgtgcttatgtcattgggttttatttgtctagtcacttgcttgcattatggccaccgtcttcttttcctctctttctctggtctctccctcttcgctctcccagcgaaggatatggcaggggccttgaaggcctgcatgaattttttctatcagagaaactgttattcaacagggtcacaaggccaatatgtgggtatgtggatatgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

1326

Amino Acids

148.47

Weight (kDa)

6.17

Isoelectric Point (pI)

46.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57630 AT1G72930 AT5G38344
fragaria_vesca FvH4_1g27020 FvH4_2g00931 FvH4_2g17330 FvH4_2g17330 FvH4_2g17340 FvH4_2g17350 FvH4_2g20690 FvH4_5g15301 FvH4_5g34194 FvH4_5g38530 FvH4_5g38740 FvH4_5g38740 FvH4_5g38740 FvH4_6g03800 FvH4_7g09791 FvH4_7g09800 FvH4_7g09800 FvH4_7g10510 FvH4_7g10520 FvH4_7g10520 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750
malus_domestica MD02G1217100.v1.1 MD02G1217200.v1.1 MD02G1217400.v1.1 MD02G1217600.v1.1 MD02G1264800.v1.1 MD02G1264900.v1.1 MD02G1302100.v1.1 MD04G1010700.v1.1 MD05G1006800.v1.1 MD05G1140100.v1.1 MD05G1140200.v1.1 MD05G1152200.v1.1 MD07G1073500.v1.1 MD07G1101700.v1.1 MD07G1102200.v1.1 MD07G1103200.v1.1 MD07G1112300.v1.1 MD08G1018200.v1.1 MD08G1018400.v1.1 MD08G1018800.v1.1 MD08G1019000.v1.1 MD08G1019100.v1.1 MD08G1019200.v1.1 MD08G1019300.v1.1 MD08G1019400.v1.1 MD08G1019600.v1.1 MD08G1019900.v1.1 MD08G1020000.v1.1 MD08G1020200.v1.1 MD08G1020500.v1.1 MD08G1020700.v1.1 MD08G1020800.v1.1 MD08G1040700.v1.1 MD11G1112400.v1.1 MD12G1068600.v1.1 MD12G1193200.v1.1 MD13G1050600.v1.1 MD15G1374900.v1.1 MD15G1375100.v1.1 MD15G1416500.v1.1 MD17G1072500.v1.1 MD17G1274200.v1.1 MD17G1274900.v1.1
prunus_persica Prupe.2G121000_v2.0.a1 Prupe.2G121000_v2.0.a1 Prupe.2G125800_v2.0.a1 Prupe.2G126000_v2.0.a1 Prupe.2G126100_v2.0.a1 Prupe.2G126200_v2.0.a1 Prupe.2G126300_v2.0.a1 Prupe.2G126400_v2.0.a1 Prupe.2G126500_v2.0.a1 Prupe.2G126600_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126800_v2.0.a1 Prupe.2G126900_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G135500_v2.0.a1 Prupe.2G135600_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.3G009800_v2.0.a1 Prupe.3G010200_v2.0.a1 Prupe.3G131000_v2.0.a1 Prupe.4G260800_v2.0.a1 Prupe.4G260900_v2.0.a1 Prupe.6G083100_v2.0.a1 Prupe.6G083200_v2.0.a1 Prupe.6G083400_v2.0.a1 Prupe.6G132100_v2.0.a1 Prupe.8G184900_v2.0.a1 Prupe.8G185200_v2.0.a1 Prupe.8G185300_v2.0.a1
pyrus_communis pycom02g17870 pycom02g17880 pycom02g19520 pycom02g22610 pycom02g22630 pycom02g22680 pycom05g13540 pycom05g14680 pycom07g04880 pycom07g04890 pycom07g05690 pycom07g05710 pycom07g05720 pycom07g05750 pycom07g05780 pycom07g06300 pycom07g08320 pycom07g08330 pycom07g08350 pycom07g08360 pycom07g08370 pycom07g08410 pycom07g08420 pycom07g08430 pycom07g08440 pycom07g08470 pycom07g08480 pycom07g08520 pycom07g08550 pycom07g08560 pycom07g08640 pycom07g08660 pycom07g08670 pycom07g08680 pycom07g08690 pycom07g08720 pycom07g08730 pycom07g08790 pycom07g08800 pycom07g08810 pycom07g08860 pycom07g08890 pycom07g09720 pycom08g01590 pycom08g01600 pycom08g01620 pycom08g01630 pycom08g01640 pycom10g12630 pycom15g16490 pycom17g07200 pycom17g07210 pycom17g07220 pycom17g11730 pycom17g11740 pycom17g27340 pycom17g27380
rosa_chinensis RchiOBHm_Chr1g0342571 RchiOBHm_Chr1g0346231 RchiOBHm_Chr1g0346831 RchiOBHm_Chr1g0346891 RchiOBHm_Chr1g0348311 RchiOBHm_Chr1g0348321 RchiOBHm_Chr1g0348331 RchiOBHm_Chr1g0348361 RchiOBHm_Chr1g0348371 RchiOBHm_Chr1g0348381 RchiOBHm_Chr1g0348401 RchiOBHm_Chr1g0348411 RchiOBHm_Chr1g0348421 RchiOBHm_Chr1g0348431 RchiOBHm_Chr2g0130881 RchiOBHm_Chr3g0487331 RchiOBHm_Chr5g0060371 RchiOBHm_Chr6g0246491 RchiOBHm_Chr6g0246871 RchiOBHm_Chr6g0250311 RchiOBHm_Chr6g0250781 RchiOBHm_Chr6g0251431 RchiOBHm_Chr6g0281871 RchiOBHm_Chr6g0281881 RchiOBHm_Chr6g0281931 RchiOBHm_Chr6g0281941 RchiOBHm_Chr6g0281951 RchiOBHm_Chr6g0281971 RchiOBHm_Chr6g0281981 RchiOBHm_Chr7g0240541 RchiOBHm_Chr7g0240631 RchiOBHm_Chr7g0240671
rosa_laevigata RLG00000000627 RLG00000000631 RLG00000000641 RLG00000000645 RLG00000000652 RLG00000000662 RLG00000000663 RLG00000000667 RLG00000000670 RLG00000000702 RLG00000001216 RLG00000001219 RLG00000007678 RLG00000012923 RLG00000012996 RLG00000013243 RLG00000017513 RLG00000017514 RLG00000020936 RLG00000022755 RLG00000023013 RLG00000028646 RLG00000028654 RLG00000028662 RLG00000028665 RLG00000028667 RLG00000028711 RLG00000028714 RLG00000028716 RLG00000028770 RLG00000028771 RLG00000028773 RLG00000028778 RLG00000028798 RLG00000028809 RLG00000028813 RLG00000029334 RLG00000030003 RLG00000033910 RLG00000034358 RLG00000035430
rosa_multiflora Rmu_co8031134.1_g000001 Rmu_co8092796.1_g000001 Rmu_co8130156.1_g000001 Rmu_co8325323.1_g000001 Rmu_co8424083.1_g000002 Rmu_sc0000008.1_g000003 Rmu_sc0000008.1_g000011 Rmu_sc0000008.1_g000015 Rmu_sc0000008.1_g000020 Rmu_sc0000091.1_g000015 Rmu_sc0000091.1_g000018 Rmu_sc0000091.1_g000029 Rmu_sc0000091.1_g000031 Rmu_sc0000391.1_g000004 Rmu_sc0001070.1_g000030 Rmu_sc0001293.1_g000016 Rmu_sc0001674.1_g000006 Rmu_sc0001731.1_g000002 Rmu_sc0001731.1_g000003 Rmu_sc0001731.1_g000005 Rmu_sc0001911.1_g000029 Rmu_sc0001913.1_g000038 Rmu_sc0001955.1_g000025 Rmu_sc0001992.1_g000022 Rmu_sc0001992.1_g000028 Rmu_sc0001992.1_g000031 Rmu_sc0002517.1_g000013 Rmu_sc0002517.1_g000017 Rmu_sc0002551.1_g000022 Rmu_sc0002551.1_g000029 Rmu_sc0002551.1_g000038 Rmu_sc0002705.1_g000015 Rmu_sc0002705.1_g000016 Rmu_sc0002882.1_g000055 Rmu_sc0003232.1_g000027 Rmu_sc0003363.1_g000037 Rmu_sc0003600.1_g000054 Rmu_sc0003918.1_g000011 Rmu_sc0004395.1_g000011 Rmu_sc0005071.1_g000004 Rmu_sc0005255.1_g000018 Rmu_sc0005327.1_g000004 Rmu_sc0005597.1_g000007 Rmu_sc0007060.1_g000007 Rmu_sc0007310.1_g000003 Rmu_sc0007383.1_g000014 Rmu_sc0007799.1_g000003 Rmu_sc0008477.1_g000016 Rmu_sc0010151.1_g000009 Rmu_sc0011217.1_g000005 Rmu_sc0016269.1_g000006 Rmu_sc0021495.1_g000001 Rmu_sc0027364.1_g000001 Rmu_sc0029432.1_g000001 Rmu_sc0041386.1_g000001 Rmu_ssc0000126.1_g000023 Rmu_ssc0000126.1_g000027
rosa_roxburghii Rroxscaffold_1G00006130 Rroxscaffold_1G00023320 Rroxscaffold_1G00038770 Rroxscaffold_2G00119800 Rroxscaffold_2G00121860 Rroxscaffold_3G00219780 Rroxscaffold_3G00219890 Rroxscaffold_4G00306740 Rroxscaffold_4G00306820 Rroxscaffold_4G00307000 Rroxscaffold_4G00307010 Rroxscaffold_4G00307020 Rroxscaffold_4G00308030 Rroxscaffold_4G00308070 Rroxscaffold_4G00308450 Rroxscaffold_4G00308460 Rroxscaffold_4G00315320 Rroxscaffold_5G00352470 Rroxscaffold_5G00371420 Rroxscaffold_6G00392300 Rroxscaffold_6G00394870 Rroxscaffold_6G00394890 Rroxscaffold_7G00186700 Rroxscaffold_7G00194980 Rroxscaffold_7G00216840
rosa_rugosa Rorug01G0076100 Rorug01G0128100 Rorug01G0149000.1 Rorug01G0149500.1 Rorug01G0180000 Rorug01G0180100 Rorug01G0182900 Rorug01G0184000 Rorug01G0184100 Rorug01G0184300 Rorug01G0184600 Rorug01G0184700 Rorug01G0184700 Rorug01G0184900 Rorug01G0185000 Rorug01G0185100 Rorug01G0189300 Rorug01G0194100 Rorug01G0194100 Rorug01G0194200 Rorug01G0194400 Rorug01G0194400 Rorug01G0194500 Rorug02G0090400 Rorug02G0090400 Rorug03G0233000 Rorug03G0233100 Rorug05G0178600 Rorug05G0178700 Rorug05G0579200 Rorug06G0144100 Rorug06G0144300 Rorug06G0144300 Rorug06G0179300 Rorug06G0208800 Rorug07G0323500 Rorug07G0337000
rosa_samantha Rh1AG046100 Rh1AG201400 Rh1AG201800 Rh1AG202100 Rh1AG202600 Rh1AG211500 Rh1AG211800 Rh1AG212200 Rh1AG212500 Rh1AG212600 Rh1AG214200 Rh1BG168000 Rh1BG168300 Rh1BG168500 Rh1BG177900 Rh1BG178200 Rh1BG178300 Rh1BG178800 Rh1BG178900 Rh1CG080900 Rh1CG183300 Rh1CG186300 Rh1CG186700 Rh1CG187000 Rh1CG187300 Rh1CG193400 Rh1CG195800 Rh1CG196000 Rh1CG196100 Rh1CG196400 Rh1CG196500 Rh1CG196800 Rh1CG198800 Rh1CG442600 Rh1DG086200 Rh1DG155400 Rh1DG156200 Rh1DG194000 Rh1DG194300 Rh1DG194900 Rh1DG197000 Rh1DG198800 Rh1DG199000 Rh1DG199200 Rh1DG202000 Rh1DG203900 Rh1DG207600 Rh1DG207900 Rh1DG208000 Rh1DG208500 Rh1DG208600 Rh1DG208700 Rh3CG339100 Rh5AG106500 Rh5AG264800 Rh5AG265300 Rh5CG302800 Rh5DG277900 Rh6AG257600 Rh6AG257700 Rh6BG260500 Rh6BG260700 Rh6CG259600 Rh6CG259700 Rh6DG252100 Rh7DG126900
rosa_wichuraiana Rw0G005780 Rw0G007540 Rw0G007550 Rw0G007560 Rw0G009390 Rw1G016900 Rw1G016930 Rw1G016940 Rw1G016970 Rw1G017860 Rw1G017890 Rw1G017900 Rw1G017910 Rw1G017920 Rw1G017960 Rw1G017970 Rw1G017980 Rw1G018150 Rw4G000830 Rw5G009290 Rw5G018950 Rw5G024850 Rw5G024870 Rw5G040460 Rw6G022290 Rw7G041020 Rw7G041200 Rw7G041360 Rw7G041450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 912, 1193
AatII GACGTC 1 cut(s) 546
Acc16I TGCGCA 1 cut(s) 900
Acc36I ACCTGC 1 cut(s) 2449
AccB1I GGYRCC 1 cut(s) 468
AccB7I CCANNNNNTGG 3 cut(s) 2185, 3272, 3961
AccI GTMKAC 1 cut(s) 2713
AccII CGCG 2 cut(s) 421, 455
AccIII TCCGGA 1 cut(s) 461
AciI CCGC 7 cut(s) 90, 568, 620, 662, 2943, 3564, 3729
AcoI YGGCCR 4 cut(s) 372, 977, 2471, 3820
AcuI CTGAAG 5 cut(s) 1273, 3004, 3251, 3356, 3735
AcyI GRCGYC 1 cut(s) 543
AfaI GTAC 5 cut(s) 999, 1944, 2629, 2849, 3437
AflII CTTAAG 1 cut(s) 1087
AflIII ACRYGT 1 cut(s) 453
AgeI ACCGGT 1 cut(s) 9
AhdI GACNNNNNGTC 2 cut(s) 454, 576
AhlI ACTAGT 1 cut(s) 2827
AjnI CCWGG 8 cut(s) 105, 471, 555, 783, 2452, 2994, 3055, 3544
AleI CACNNNNGTG 1 cut(s) 1362
AloI GAACNNNNNNTCC 2 cut(s) 3036, 3068
Alw21I GWGCWC 3 cut(s) 369, 1359, 3224
Alw26I GTCTC 7 cut(s) 348, 584, 2074, 2185, 2699, 3349, 3857
Alw44I GTGCAC 1 cut(s) 1355
AlwNI CAGNNNCTG 1 cut(s) 2185
Ama87I CYCGRG 1 cut(s) 801
Aor13HI TCCGGA 1 cut(s) 461
ApaLI GTGCAC 1 cut(s) 1355
ApeKI GCWGC 8 cut(s) 24, 191, 942, 1167, 2541, 3441, 3698, 3732
AseI ATTAAT 1 cut(s) 3197
AsiGI ACCGGT 1 cut(s) 9
Asp700I GAANNNNTTC 8 cut(s) 796, 1371, 1716, 1968, 2928, 2985, 3317, 3914
AspLEI GCGC 1 cut(s) 901
AspS9I GGNCC 9 cut(s) 87, 176, 510, 1135, 1282, 1856, 2176, 3569, 3891
AsuC2I CCSGG 2 cut(s) 371, 3036
AsuHPI GGTGA 8 cut(s) 16, 295, 571, 748, 1687, 2174, 2828, 3508
AsuII TTCGAA 1 cut(s) 972
AsuNHI GCTAGC 1 cut(s) 194
AvaI CYCGRG 1 cut(s) 801
AvaII GGWCC 7 cut(s) 176, 510, 1135, 1282, 1856, 2176, 3569
BaeGI GKGCMC 2 cut(s) 705, 1359
BaeI ACNNNNGTAYC 2 cut(s) 2611, 2644
BalI TGGCCA 2 cut(s) 2473, 3822
BanI GGYRCC 1 cut(s) 468
BanII GRGCYC 1 cut(s) 369
BauI CACGAG 2 cut(s) 704, 2718
BbsI GAAGAC 4 cut(s) 219, 1421, 2099, 3821
Bbv12I GWGCWC 3 cut(s) 369, 1359, 3224
BbvI GCAGC 8 cut(s) 11, 178, 929, 1154, 2528, 3453, 3710, 3744
BceAI ACGGC 4 cut(s) 633, 992, 3232, 3274
BciT130I CCWGG 8 cut(s) 107, 473, 557, 785, 2454, 2996, 3057, 3546
BciVI GTATCC 3 cut(s) 1882, 2764, 2815
BclI TGATCA 2 cut(s) 1522, 2886
BcnI CCSGG 2 cut(s) 371, 3036
BcoDI GTCTC 7 cut(s) 348, 584, 2074, 2185, 2699, 3349, 3857
BcuI ACTAGT 1 cut(s) 2827
BfmI CTRYAG 4 cut(s) 333, 1419, 1848, 2686
BfrI CTTAAG 1 cut(s) 1087
BfuAI ACCTGC 1 cut(s) 2449
BfuI GTATCC 3 cut(s) 1882, 2764, 2815
BglI GCCNNNNNGGC 2 cut(s) 3630, 3899
BglII AGATCT 2 cut(s) 2121, 2728
Bme18I GGWCC 7 cut(s) 176, 510, 1135, 1282, 1856, 2176, 3569
BmeRI GACNNNNNGTC 2 cut(s) 454, 576
BmeT110I CYCGRG 1 cut(s) 801
BmgT120I GGNCC 9 cut(s) 87, 176, 510, 1135, 1282, 1856, 2176, 3569, 3891
BmiI GGNNCC 9 cut(s) 88, 470, 2503, 2925, 2982, 3054, 3314, 3571, 3892
BmtI GCTAGC 1 cut(s) 198
BpiI GAAGAC 4 cut(s) 219, 1421, 2099, 3821
BpmI CTGGAG 1 cut(s) 2207
Bpu14I TTCGAA 1 cut(s) 972
BpuEI CTTGAG 4 cut(s) 289, 1175, 1205, 2648
BpuMI CCSGG 2 cut(s) 371, 3036
Bsa29I ATCGAT 1 cut(s) 113
BsaAI YACGTR 1 cut(s) 1333
BsaBI GATNNNNATC 2 cut(s) 1125, 1644
BsaHI GRCGYC 1 cut(s) 543
BsaI GGTCTC 1 cut(s) 3857
BsaWI WCCGGW 3 cut(s) 9, 461, 512
BsaXI ACNNNNNCTCC 2 cut(s) 663, 693
Bse118I RCCGGY 2 cut(s) 9, 71
Bse1I ACTGG 6 cut(s) 93, 231, 1804, 2164, 2849, 3371
Bse3DI GCAATG 1 cut(s) 3742
Bse8I GATNNNNATC 2 cut(s) 1125, 1644
BseAI TCCGGA 1 cut(s) 461
BseBI CCWGG 8 cut(s) 107, 473, 557, 785, 2454, 2996, 3057, 3546
BseCI ATCGAT 1 cut(s) 113
BseJI GATNNNNATC 2 cut(s) 1125, 1644
BseMI GCAATG 1 cut(s) 3742
BseMII CTCAG 8 cut(s) 1422, 1478, 1933, 2146, 2623, 2726, 3360, 3640
BseNI ACTGG 6 cut(s) 93, 231, 1804, 2164, 2849, 3371
BseSI GKGCMC 2 cut(s) 705, 1359
BseX3I CGGCCG 1 cut(s) 372
BseXI GCAGC 8 cut(s) 11, 178, 929, 1154, 2528, 3453, 3710, 3744
BseYI CCCAGC 1 cut(s) 3871
BsgI GTGCAG 3 cut(s) 328, 1594, 2760
Bsh1236I CGCG 2 cut(s) 421, 455
Bsh1285I CGRYCG 1 cut(s) 375
BshNI GGYRCC 1 cut(s) 468
BshTI ACCGGT 1 cut(s) 9
BshVI ATCGAT 1 cut(s) 113
BsiEI CGRYCG 1 cut(s) 375
BsiHKAI GWGCWC 3 cut(s) 369, 1359, 3224
BsiHKCI CYCGRG 1 cut(s) 801
BsiSI CCGG 7 cut(s) 10, 72, 371, 375, 462, 513, 3035
BslFI GGGAC 2 cut(s) 3012, 3562
BsmAI GTCTC 7 cut(s) 348, 584, 2074, 2185, 2699, 3349, 3857
BsmBI CGTCTC 1 cut(s) 348
BsmFI GGGAC 2 cut(s) 3012, 3562
BsmI GAATGC 3 cut(s) 1213, 1623, 3261
Bso31I GGTCTC 1 cut(s) 3857
BsoBI CYCGRG 1 cut(s) 801
Bsp119I TTCGAA 1 cut(s) 972
Bsp1286I GDGCHC 4 cut(s) 369, 705, 1359, 3224
Bsp13I TCCGGA 1 cut(s) 461
Bsp1407I TGTACA 1 cut(s) 1942
Bsp19I CCATGG 3 cut(s) 183, 2919, 2976
Bsp68I TCGCGA 1 cut(s) 421
BspACI CCGC 7 cut(s) 90, 568, 620, 662, 2943, 3564, 3729
BspCNI CTCAG 8 cut(s) 1421, 1479, 1932, 2145, 2622, 2727, 3359, 3639
BspDI ATCGAT 1 cut(s) 113
BspEI TCCGGA 1 cut(s) 461
BspFNI CGCG 2 cut(s) 421, 455
BspHI TCATGA 1 cut(s) 2292
BspLI GGNNCC 9 cut(s) 88, 470, 2503, 2925, 2982, 3054, 3314, 3571, 3892
BspMAI CTGCAG 2 cut(s) 337, 1852
BspMI ACCTGC 1 cut(s) 2449
BspOI GCTAGC 1 cut(s) 198
BspT104I TTCGAA 1 cut(s) 972
BspT107I GGYRCC 1 cut(s) 468
BspTI CTTAAG 1 cut(s) 1087
BspTNI GGTCTC 1 cut(s) 3857
BsrDI GCAATG 1 cut(s) 3742
BsrFI RCCGGY 2 cut(s) 9, 71
BsrGI TGTACA 1 cut(s) 1942
BsrI ACTGG 6 cut(s) 93, 231, 1804, 2164, 2849, 3371
BssAI RCCGGY 2 cut(s) 9, 71
BssNI GRCGYC 1 cut(s) 543
BssSI CACGAG 2 cut(s) 704, 2718
BssT1I CCWWGG 6 cut(s) 183, 493, 2757, 2919, 2976, 3133
Bst2BI CACGAG 2 cut(s) 704, 2718
Bst2UI CCWGG 8 cut(s) 107, 473, 557, 785, 2454, 2996, 3057, 3546
Bst4CI ACNGT 9 cut(s) 1364, 1469, 1618, 2872, 3063, 3343, 3435, 3827, 3932
Bst6I CTCTTC 6 cut(s) 500, 1292, 1702, 2792, 3408, 3866
BstACI GRCGYC 1 cut(s) 543
BstAFI CTTAAG 1 cut(s) 1087
BstAUI TGTACA 1 cut(s) 1942
BstBAI YACGTR 1 cut(s) 1333
BstBI TTCGAA 1 cut(s) 972
BstC8I GCNNGC 5 cut(s) 196, 1295, 1299, 3812, 3904
BstDSI CCRYGG 3 cut(s) 183, 2919, 2976
BstFNI CGCG 2 cut(s) 421, 455
BstHHI GCGC 1 cut(s) 901
BstMAI GTCTC 7 cut(s) 348, 584, 2074, 2185, 2699, 3349, 3857
BstMCI CGRYCG 1 cut(s) 375
BstMWI GCNNNNNNNGC 6 cut(s) 218, 380, 1056, 3630, 3872, 3899
BstNI CCWGG 8 cut(s) 107, 473, 557, 785, 2454, 2996, 3057, 3546
BstNSI RCATGY 4 cut(s) 1301, 1551, 1602, 1837
BstSFI CTRYAG 4 cut(s) 333, 1419, 1848, 2686
BstSLI GKGCMC 2 cut(s) 705, 1359
BstUI CGCG 2 cut(s) 421, 455
BstV1I GCAGC 8 cut(s) 11, 178, 929, 1154, 2528, 3453, 3710, 3744
BstV2I GAAGAC 4 cut(s) 219, 1421, 2099, 3821
BstX2I RGATCY 6 cut(s) 1735, 2121, 2605, 2728, 3237, 3454
BstXI CCANNNNNNTGG 1 cut(s) 3366
BstYI RGATCY 6 cut(s) 1735, 2121, 2605, 2728, 3237, 3454
BstZI CGGCCG 1 cut(s) 372
Bsu15I ATCGAT 1 cut(s) 113
BsuI GTATCC 3 cut(s) 1882, 2764, 2815
BsuTUI ATCGAT 1 cut(s) 113
BtgI CCRYGG 3 cut(s) 183, 2919, 2976
BtgZI GCGATG 2 cut(s) 436, 3345
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 5 cut(s) 330, 1474, 2842, 3339, 3634
BtuMI TCGCGA 1 cut(s) 421
BveI ACCTGC 1 cut(s) 2449
Cac8I GCNNGC 5 cut(s) 196, 1295, 1299, 3812, 3904
CaiI CAGNNNCTG 1 cut(s) 2185
CciI TCATGA 1 cut(s) 2292
CfoI GCGC 1 cut(s) 901
Cfr10I RCCGGY 2 cut(s) 9, 71
Cfr13I GGNCC 9 cut(s) 87, 176, 510, 1135, 1282, 1856, 2176, 3569, 3891
ClaI ATCGAT 1 cut(s) 113
CseI GACGC 1 cut(s) 444
CsiI ACCWGGT 1 cut(s) 783
Csp6I GTAC 5 cut(s) 998, 1943, 2628, 2848, 3436
CspAI ACCGGT 1 cut(s) 9
CviQI GTAC 5 cut(s) 998, 1943, 2628, 2848, 3436
DriI GACNNNNNGTC 2 cut(s) 454, 576
EaeI YGGCCR 4 cut(s) 372, 977, 2471, 3820
EagI CGGCCG 1 cut(s) 372
Eam1104I CTCTTC 6 cut(s) 500, 1292, 1702, 2792, 3408, 3866
Eam1105I GACNNNNNGTC 2 cut(s) 454, 576
EarI CTCTTC 6 cut(s) 500, 1292, 1702, 2792, 3408, 3866
EciI GGCGGA 1 cut(s) 635
Ecl136II GAGCTC 1 cut(s) 367
EclXI CGGCCG 1 cut(s) 372
Eco130I CCWWGG 6 cut(s) 183, 493, 2757, 2919, 2976, 3133
Eco147I AGGCCT 3 cut(s) 1821, 2652, 3902
Eco24I GRGCYC 1 cut(s) 369
Eco31I GGTCTC 1 cut(s) 3857
Eco32I GATATC 2 cut(s) 1576, 1646
Eco47I GGWCC 7 cut(s) 176, 510, 1135, 1282, 1856, 2176, 3569
Eco52I CGGCCG 1 cut(s) 372
Eco53kI GAGCTC 1 cut(s) 367
Eco57I CTGAAG 5 cut(s) 1273, 3004, 3251, 3356, 3735
Eco88I CYCGRG 1 cut(s) 801
EcoICRI GAGCTC 1 cut(s) 367
EcoO109I RGGNCCY 2 cut(s) 1135, 3891
EcoRI GAATTC 1 cut(s) 3740
EcoRII CCWGG 8 cut(s) 105, 471, 555, 783, 2452, 2994, 3055, 3544
EcoRV GATATC 2 cut(s) 1576, 1646
EcoT14I CCWWGG 6 cut(s) 183, 493, 2757, 2919, 2976, 3133
EcoT22I ATGCAT 6 cut(s) 1600, 1686, 1786, 1900, 2792, 3163
EcoT38I GRGCYC 1 cut(s) 369
ErhI CCWWGG 6 cut(s) 183, 493, 2757, 2919, 2976, 3133
Esp3I CGTCTC 1 cut(s) 348
FalI AAGNNNNNCTT 2 cut(s) 1092, 1124
FaqI GGGAC 2 cut(s) 3012, 3562
FauNDI CATATG 2 cut(s) 18, 2316
FbaI TGATCA 2 cut(s) 1522, 2886
FblI GTMKAC 1 cut(s) 2713
FriOI GRGCYC 1 cut(s) 369
FspI TGCGCA 1 cut(s) 900
GlaI GCGC 1 cut(s) 900
GsaI CCCAGC 1 cut(s) 3875
GsuI CTGGAG 1 cut(s) 2207
HapII CCGG 7 cut(s) 10, 72, 371, 375, 462, 513, 3035
HgaI GACGC 1 cut(s) 444
HhaI GCGC 1 cut(s) 901
Hin1I GRCGYC 1 cut(s) 543
Hin6I GCGC 1 cut(s) 899
HinP1I GCGC 1 cut(s) 899
HincII GTYRAC 2 cut(s) 697, 2581
HindII GTYRAC 2 cut(s) 697, 2581
HindIII AAGCTT 3 cut(s) 219, 2215, 2297
HpaI GTTAAC 1 cut(s) 2581
HpaII CCGG 7 cut(s) 10, 72, 371, 375, 462, 513, 3035
HphI GGTGA 8 cut(s) 16, 295, 571, 748, 1687, 2174, 2828, 3508
Hpy99I CGWCG 4 cut(s) 362, 365, 460, 545
HpyCH4III ACNGT 9 cut(s) 1364, 1469, 1618, 2872, 3063, 3343, 3435, 3827, 3932
HpyCH4IV ACGT 3 cut(s) 543, 1332, 1747
HpyF10VI GCNNNNNNNGC 6 cut(s) 218, 380, 1056, 3630, 3872, 3899
HpySE526I ACGT 3 cut(s) 543, 1332, 1747
Hsp92I GRCGYC 1 cut(s) 543
HspAI GCGC 1 cut(s) 899
Kpn2I TCCGGA 1 cut(s) 461
Ksp22I TGATCA 2 cut(s) 1522, 2886
KspAI GTTAAC 1 cut(s) 2581
LmnI GCTCC 3 cut(s) 38, 372, 2096
Lsp1109I GCAGC 8 cut(s) 11, 178, 929, 1154, 2528, 3453, 3710, 3744
MabI ACCWGGT 1 cut(s) 783
MaeII ACGT 3 cut(s) 543, 1332, 1747
MflI RGATCY 6 cut(s) 1735, 2121, 2605, 2728, 3237, 3454
MhlI GDGCHC 4 cut(s) 369, 705, 1359, 3224
MlsI TGGCCA 2 cut(s) 2473, 3822
MluI ACGCGT 1 cut(s) 453
MluNI TGGCCA 2 cut(s) 2473, 3822
MlyI GAGTC 5 cut(s) 96, 586, 716, 1766, 2813
MmeI TCCRAC 2 cut(s) 769, 2931
Mox20I TGGCCA 2 cut(s) 2473, 3822
Mph1103I ATGCAT 6 cut(s) 1600, 1686, 1786, 1900, 2792, 3163
MroI TCCGGA 1 cut(s) 461
MroXI GAANNNNTTC 8 cut(s) 796, 1371, 1716, 1968, 2928, 2985, 3317, 3914
MscI TGGCCA 2 cut(s) 2473, 3822
MslI CAYNNNNRTG 6 cut(s) 1362, 1838, 2315, 2785, 2933, 3009
Msp20I TGGCCA 2 cut(s) 2473, 3822
MspCI CTTAAG 1 cut(s) 1087
MspI CCGG 7 cut(s) 10, 72, 371, 375, 462, 513, 3035
Mva1269I GAATGC 3 cut(s) 1213, 1623, 3261
MvaI CCWGG 8 cut(s) 107, 473, 557, 785, 2454, 2996, 3057, 3546
MvnI CGCG 2 cut(s) 421, 455
MwoI GCNNNNNNNGC 6 cut(s) 218, 380, 1056, 3630, 3872, 3899
NciI CCSGG 2 cut(s) 371, 3036
NcoI CCATGG 3 cut(s) 183, 2919, 2976
NdeI CATATG 2 cut(s) 18, 2316
NheI GCTAGC 1 cut(s) 194
NlaIV GGNNCC 9 cut(s) 88, 470, 2503, 2925, 2982, 3054, 3314, 3571, 3892
NmuCI GTSAC 8 cut(s) 484, 595, 1697, 2162, 2816, 3337, 3802, 3945
NruI TCGCGA 1 cut(s) 421
NsbI TGCGCA 1 cut(s) 900
NsiI ATGCAT 6 cut(s) 1600, 1686, 1786, 1900, 2792, 3163
NspI RCATGY 4 cut(s) 1301, 1551, 1602, 1837
NspV TTCGAA 1 cut(s) 972
OliI CACNNNNGTG 1 cut(s) 1362
PaeI GCATGC 1 cut(s) 1301
PaeR7I CTCGAG 1 cut(s) 801
PagI TCATGA 1 cut(s) 2292
PasI CCCWGGG 1 cut(s) 2453
PceI AGGCCT 3 cut(s) 1821, 2652, 3902
PctI GAATGC 3 cut(s) 1213, 1623, 3261
PdmI GAANNNNTTC 8 cut(s) 796, 1371, 1716, 1968, 2928, 2985, 3317, 3914
PflMI CCANNNNNTGG 3 cut(s) 2185, 3272, 3961
PfoI TCCNGGA 2 cut(s) 3034, 3055
PinAI ACCGGT 1 cut(s) 9
PleI GAGTC 5 cut(s) 96, 585, 715, 1766, 2813
PpsI GAGTC 5 cut(s) 96, 585, 715, 1766, 2813
Ppu21I YACGTR 1 cut(s) 1333
PpuMI RGGWCCY 1 cut(s) 1135
PshBI ATTAAT 1 cut(s) 3197
PsiI TTATAA 2 cut(s) 912, 1193
Psp124BI GAGCTC 1 cut(s) 369
Psp5II RGGWCCY 1 cut(s) 1135
Psp6I CCWGG 8 cut(s) 105, 471, 555, 783, 2452, 2994, 3055, 3544
PspFI CCCAGC 1 cut(s) 3871
PspGI CCWGG 8 cut(s) 105, 471, 555, 783, 2452, 2994, 3055, 3544
PspN4I GGNNCC 9 cut(s) 88, 470, 2503, 2925, 2982, 3054, 3314, 3571, 3892
PspPI GGNCC 9 cut(s) 87, 176, 510, 1135, 1282, 1856, 2176, 3569, 3891
PspPPI RGGWCCY 1 cut(s) 1135
PsrI GAACNNNNNNTAC 2 cut(s) 3070, 3102
PstI CTGCAG 2 cut(s) 337, 1852
PstNI CAGNNNCTG 1 cut(s) 2185
PsuI RGATCY 6 cut(s) 1735, 2121, 2605, 2728, 3237, 3454
RruI TCGCGA 1 cut(s) 421
RsaI GTAC 5 cut(s) 999, 1944, 2629, 2849, 3437
RsaNI GTAC 5 cut(s) 998, 1943, 2628, 2848, 3436
RseI CAYNNNNRTG 6 cut(s) 1362, 1838, 2315, 2785, 2933, 3009
SacI GAGCTC 1 cut(s) 369
Sau96I GGNCC 9 cut(s) 87, 176, 510, 1135, 1282, 1856, 2176, 3569, 3891
SchI GAGTC 5 cut(s) 96, 586, 716, 1766, 2813
SduI GDGCHC 4 cut(s) 369, 705, 1359, 3224
SexAI ACCWGGT 1 cut(s) 783
SfcI CTRYAG 4 cut(s) 333, 1419, 1848, 2686
SfiI GGCCNNNNNGGCC 1 cut(s) 3899
Sfr274I CTCGAG 1 cut(s) 801
SfuI TTCGAA 1 cut(s) 972
SinI GGWCC 7 cut(s) 176, 510, 1135, 1282, 1856, 2176, 3569
SlaI CTCGAG 1 cut(s) 801
SmiMI CAYNNNNRTG 6 cut(s) 1362, 1838, 2315, 2785, 2933, 3009
SmlI CTYRAG 6 cut(s) 268, 801, 1087, 1154, 1220, 2663
SmoI CTYRAG 6 cut(s) 268, 801, 1087, 1154, 1220, 2663
SpeI ACTAGT 1 cut(s) 2827
SphI GCATGC 1 cut(s) 1301
SseBI AGGCCT 3 cut(s) 1821, 2652, 3902
SsiI CCGC 7 cut(s) 90, 568, 620, 662, 2943, 3564, 3729
SspI AATATT 1 cut(s) 727
SstI GAGCTC 1 cut(s) 369
StuI AGGCCT 3 cut(s) 1821, 2652, 3902
StyI CCWWGG 6 cut(s) 183, 493, 2757, 2919, 2976, 3133
TaaI ACNGT 9 cut(s) 1364, 1469, 1618, 2872, 3063, 3343, 3435, 3827, 3932
TaiI ACGT 3 cut(s) 546, 1335, 1750
TaqI TCGA 8 cut(s) 57, 113, 757, 802, 951, 972, 1116, 1231
TatI WGTACW 3 cut(s) 997, 1942, 3435
TauI GCSGC 3 cut(s) 92, 665, 3732
TscAI CASTG 5 cut(s) 337, 1474, 2849, 3346, 3634
TseFI GTSAC 8 cut(s) 484, 595, 1697, 2162, 2816, 3337, 3802, 3945
TseI GCWGC 8 cut(s) 24, 191, 942, 1167, 2541, 3441, 3698, 3732
Tsp45I GTSAC 8 cut(s) 484, 595, 1697, 2162, 2816, 3337, 3802, 3945
TspGWI ACGGA 1 cut(s) 3057
TspRI CASTG 5 cut(s) 337, 1474, 2849, 3346, 3634
Van91I CCANNNNNTGG 3 cut(s) 2185, 3272, 3961
Vha464I CTTAAG 1 cut(s) 1087
VneI GTGCAC 1 cut(s) 1355
VpaK11BI GGWCC 7 cut(s) 176, 510, 1135, 1282, 1856, 2176, 3569
VspI ATTAAT 1 cut(s) 3197
XbaI TCTAGA 1 cut(s) 1723
XceI RCATGY 4 cut(s) 1301, 1551, 1602, 1837
XcmI CCANNNNNNNNNTGG 2 cut(s) 75, 3323
XhoI CTCGAG 1 cut(s) 801
XmiI GTMKAC 1 cut(s) 2713
XmnI GAANNNNTTC 8 cut(s) 796, 1371, 1716, 1968, 2928, 2985, 3317, 3914
ZraI GACGTC 1 cut(s) 544
Zsp2I ATGCAT 6 cut(s) 1600, 1686, 1786, 1900, 2792, 3163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.