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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1572 |
| AccB1I | GGYRCC | 1 cut(s) | 276 |
| AccI | GTMKAC | 3 cut(s) | 936, 1564, 1896 |
| AccII | CGCG | 1 cut(s) | 263 |
| AciI | CCGC | 2 cut(s) | 442, 2912 |
| AclI | AACGTT | 2 cut(s) | 2285, 2680 |
| AclWI | GGATC | 8 cut(s) | 34, 292, 353, 655, 1921, 2560, 2912, 2983 |
| AcoI | YGGCCR | 2 cut(s) | 1117, 2788 |
| AcsI | RAATTY | 7 cut(s) | 730, 1774, 1811, 1910, 2365, 2695, 2856 |
| AcuI | CTGAAG | 1 cut(s) | 1155 |
| AcyI | GRCGYC | 2 cut(s) | 233, 1573 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 372, 1136, 2483, 2732 |
| AflII | CTTAAG | 1 cut(s) | 1099 |
| AflIII | ACRYGT | 2 cut(s) | 261, 2112 |
| AjiI | CACGTC | 1 cut(s) | 2964 |
| AjnI | CCWGG | 5 cut(s) | 199, 1119, 1638, 2236, 2785 |
| AleI | CACNNNNGTG | 1 cut(s) | 2926 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1897, 1929 |
| Alw21I | GWGCWC | 5 cut(s) | 861, 898, 1098, 2433, 3156 |
| Alw26I | GTCTC | 3 cut(s) | 1679, 2053, 3094 |
| Alw44I | GTGCAC | 1 cut(s) | 857 |
| AlwI | GGATC | 8 cut(s) | 34, 292, 353, 655, 1921, 2560, 2912, 2983 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2737 |
| Ama87I | CYCGRG | 1 cut(s) | 612 |
| AoxI | GGCC | 5 cut(s) | 1117, 1805, 1951, 2234, 2788 |
| ApaLI | GTGCAC | 1 cut(s) | 857 |
| ApeKI | GCWGC | 2 cut(s) | 17, 753 |
| ApoI | RAATTY | 7 cut(s) | 730, 1774, 1811, 1910, 2365, 2695, 2856 |
| Asp700I | GAANNNNTTC | 7 cut(s) | 1269, 1343, 1527, 2001, 2648, 2681, 3114 |
| AspLEI | GCGC | 1 cut(s) | 7 |
| AspS9I | GGNCC | 5 cut(s) | 325, 490, 946, 1054, 1123 |
| AsuC2I | CCSGG | 1 cut(s) | 990 |
| AsuHPI | GGTGA | 7 cut(s) | 145, 559, 566, 1235, 1474, 1498, 2579 |
| AsuII | TTCGAA | 1 cut(s) | 251 |
| AvaI | CYCGRG | 1 cut(s) | 612 |
| AvaII | GGWCC | 5 cut(s) | 325, 490, 946, 1054, 1123 |
| BaeGI | GKGCMC | 1 cut(s) | 861 |
| BalI | TGGCCA | 1 cut(s) | 1119 |
| BanI | GGYRCC | 1 cut(s) | 276 |
| BanII | GRGCYC | 3 cut(s) | 898, 1098, 2433 |
| BauI | CACGAG | 1 cut(s) | 413 |
| BbsI | GAAGAC | 3 cut(s) | 99, 337, 704 |
| Bbv12I | GWGCWC | 5 cut(s) | 861, 898, 1098, 2433, 3156 |
| BbvI | GCAGC | 2 cut(s) | 29, 765 |
| BceAI | ACGGC | 3 cut(s) | 795, 1769, 2249 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 421, 455 |
| BciT130I | CCWGG | 5 cut(s) | 201, 1121, 1640, 2238, 2787 |
| BcnI | CCSGG | 1 cut(s) | 990 |
| BcoDI | GTCTC | 3 cut(s) | 1679, 2053, 3094 |
| BfmI | CTRYAG | 2 cut(s) | 206, 1782 |
| BfoI | RGCGCY | 1 cut(s) | 8 |
| BfrI | CTTAAG | 1 cut(s) | 1099 |
| BisI | GCNGC | 2 cut(s) | 18, 754 |
| BlsI | GCNGC | 2 cut(s) | 19, 755 |
| BmcAI | AGTACT | 3 cut(s) | 963, 1596, 2597 |
| Bme1390I | CCNGG | 6 cut(s) | 201, 990, 1121, 1640, 2238, 2787 |
| Bme18I | GGWCC | 5 cut(s) | 325, 490, 946, 1054, 1123 |
| BmeT110I | CYCGRG | 1 cut(s) | 612 |
| BmgBI | CACGTC | 1 cut(s) | 2964 |
| BmgT120I | GGNCC | 5 cut(s) | 325, 490, 946, 1054, 1123 |
| BmiI | GGNNCC | 2 cut(s) | 278, 2784 |
| BmrFI | CCNGG | 6 cut(s) | 201, 990, 1121, 1640, 2238, 2787 |
| BmrI | ACTGGG | 1 cut(s) | 2599 |
| BmsI | GCATC | 7 cut(s) | 399, 946, 1445, 1663, 2091, 2308, 2749 |
| BmuI | ACTGGG | 1 cut(s) | 2599 |
| BoxI | GACNNNNGTC | 2 cut(s) | 1892, 2966 |
| BpiI | GAAGAC | 3 cut(s) | 99, 337, 704 |
| BplI | GAGNNNNNCTC | 3 cut(s) | 36, 1930, 1962 |
| BpmI | CTGGAG | 3 cut(s) | 1197, 2709, 3174 |
| Bpu14I | TTCGAA | 1 cut(s) | 251 |
| BpuEI | CTTGAG | 3 cut(s) | 6, 97, 197 |
| BpuMI | CCSGG | 1 cut(s) | 990 |
| Bsa29I | ATCGAT | 2 cut(s) | 2555, 3196 |
| BsaBI | GATNNNNATC | 3 cut(s) | 357, 602, 2376 |
| BsaHI | GRCGYC | 2 cut(s) | 233, 1573 |
| BsaI | GGTCTC | 1 cut(s) | 3094 |
| BsaJI | CCNNGG | 5 cut(s) | 321, 576, 1057, 1627, 1965 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1719, 1749, 2997, 3027, 3060, 3090 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 372, 1136, 2483, 2732 |
| Bse118I | RCCGGY | 1 cut(s) | 2790 |
| Bse1I | ACTGG | 5 cut(s) | 341, 1180, 1615, 2594, 2726 |
| Bse3DI | GCAATG | 1 cut(s) | 1353 |
| Bse8I | GATNNNNATC | 3 cut(s) | 357, 602, 2376 |
| BseBI | CCWGG | 5 cut(s) | 201, 1121, 1640, 2238, 2787 |
| BseCI | ATCGAT | 2 cut(s) | 2555, 3196 |
| BseDI | CCNNGG | 5 cut(s) | 321, 576, 1057, 1627, 1965 |
| BseJI | GATNNNNATC | 3 cut(s) | 357, 602, 2376 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 372, 1136, 2483, 2732 |
| BseMI | GCAATG | 1 cut(s) | 1353 |
| BseMII | CTCAG | 3 cut(s) | 437, 1542, 1589 |
| BseNI | ACTGG | 5 cut(s) | 341, 1180, 1615, 2594, 2726 |
| BseRI | GAGGAG | 4 cut(s) | 198, 863, 2431, 2909 |
| BseSI | GKGCMC | 1 cut(s) | 861 |
| BseXI | GCAGC | 2 cut(s) | 29, 765 |
| BseYI | CCCAGC | 1 cut(s) | 2771 |
| Bsh1236I | CGCG | 1 cut(s) | 263 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3200 |
| BshFI | GGCC | 5 cut(s) | 1119, 1807, 1953, 2236, 2790 |
| BshNI | GGYRCC | 1 cut(s) | 276 |
| BshVI | ATCGAT | 2 cut(s) | 2555, 3196 |
| BsiEI | CGRYCG | 1 cut(s) | 3200 |
| BsiHKAI | GWGCWC | 5 cut(s) | 861, 898, 1098, 2433, 3156 |
| BsiHKCI | CYCGRG | 1 cut(s) | 612 |
| BsiSI | CCGG | 3 cut(s) | 220, 990, 2791 |
| BslFI | GGGAC | 2 cut(s) | 1391, 2748 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 372, 1136, 2483, 2732 |
| BsmAI | GTCTC | 3 cut(s) | 1679, 2053, 3094 |
| BsmFI | GGGAC | 2 cut(s) | 1391, 2748 |
| BsmI | GAATGC | 1 cut(s) | 1434 |
| BsnI | GGCC | 5 cut(s) | 1119, 1807, 1953, 2236, 2790 |
| Bso31I | GGTCTC | 1 cut(s) | 3094 |
| BsoBI | CYCGRG | 1 cut(s) | 612 |
| Bsp119I | TTCGAA | 1 cut(s) | 251 |
| Bsp1286I | GDGCHC | 5 cut(s) | 861, 898, 1098, 2433, 3156 |
| Bsp1407I | TGTACA | 1 cut(s) | 1719 |
| Bsp19I | CCATGG | 1 cut(s) | 1965 |
| BspACI | CCGC | 2 cut(s) | 442, 2912 |
| BspANI | GGCC | 5 cut(s) | 1119, 1807, 1953, 2236, 2790 |
| BspCNI | CTCAG | 3 cut(s) | 436, 1543, 1590 |
| BspDI | ATCGAT | 2 cut(s) | 2555, 3196 |
| BspFNI | CGCG | 1 cut(s) | 263 |
| BspHI | TCATGA | 4 cut(s) | 294, 1287, 2035, 3106 |
| BspLI | GGNNCC | 2 cut(s) | 278, 2784 |
| BspPI | GGATC | 8 cut(s) | 34, 292, 353, 655, 1921, 2560, 2912, 2983 |
| BspQI | GCTCTTC | 2 cut(s) | 1200, 1539 |
| BspT104I | TTCGAA | 1 cut(s) | 251 |
| BspT107I | GGYRCC | 1 cut(s) | 276 |
| BspTI | CTTAAG | 1 cut(s) | 1099 |
| BspTNI | GGTCTC | 1 cut(s) | 3094 |
| BsrDI | GCAATG | 1 cut(s) | 1353 |
| BsrFI | RCCGGY | 1 cut(s) | 2790 |
| BsrGI | TGTACA | 1 cut(s) | 1719 |
| BsrI | ACTGG | 5 cut(s) | 341, 1180, 1615, 2594, 2726 |
| BssAI | RCCGGY | 1 cut(s) | 2790 |
| BssECI | CCNNGG | 5 cut(s) | 321, 576, 1057, 1627, 1965 |
| BssNI | GRCGYC | 2 cut(s) | 233, 1573 |
| BssSI | CACGAG | 1 cut(s) | 413 |
| BssT1I | CCWWGG | 3 cut(s) | 576, 1627, 1965 |
| Bst2BI | CACGAG | 1 cut(s) | 413 |
| Bst2UI | CCWGG | 5 cut(s) | 201, 1121, 1640, 2238, 2787 |
| Bst4CI | ACNGT | 6 cut(s) | 62, 1316, 1429, 1667, 1690, 2990 |
| Bst6I | CTCTTC | 5 cut(s) | 904, 1200, 1513, 1539, 3092 |
| BstACI | GRCGYC | 2 cut(s) | 233, 1573 |
| BstAFI | CTTAAG | 1 cut(s) | 1099 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 470 |
| BstAUI | TGTACA | 1 cut(s) | 1719 |
| BstBI | TTCGAA | 1 cut(s) | 251 |
| BstC8I | GCNNGC | 7 cut(s) | 471, 1106, 1110, 2024, 2120, 2657, 2690 |
| BstDSI | CCRYGG | 2 cut(s) | 1057, 1965 |
| BstEII | GGTNACC | 1 cut(s) | 56 |
| BstFNI | CGCG | 1 cut(s) | 263 |
| BstH2I | RGCGCY | 1 cut(s) | 8 |
| BstHHI | GCGC | 1 cut(s) | 7 |
| BstMAI | GTCTC | 3 cut(s) | 1679, 2053, 3094 |
| BstMCI | CGRYCG | 1 cut(s) | 3200 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 470, 479, 2428, 2796, 2885, 2949 |
| BstNI | CCWGG | 5 cut(s) | 201, 1121, 1640, 2238, 2787 |
| BstNSI | RCATGY | 5 cut(s) | 1112, 1495, 1648, 2116, 2122 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 1892, 2966 |
| BstPI | GGTNACC | 1 cut(s) | 56 |
| BstSCI | CCNGG | 6 cut(s) | 199, 988, 1119, 1638, 2236, 2785 |
| BstSFI | CTRYAG | 2 cut(s) | 206, 1782 |
| BstSLI | GKGCMC | 1 cut(s) | 861 |
| BstUI | CGCG | 1 cut(s) | 263 |
| BstV1I | GCAGC | 2 cut(s) | 29, 765 |
| BstV2I | GAAGAC | 3 cut(s) | 99, 337, 704 |
| BstX2I | RGATCY | 1 cut(s) | 1926 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1949, 2928 |
| BstYI | RGATCY | 1 cut(s) | 1926 |
| Bsu15I | ATCGAT | 2 cut(s) | 2555, 3196 |
| BsuRI | GGCC | 5 cut(s) | 1119, 1807, 1953, 2236, 2790 |
| BsuTUI | ATCGAT | 2 cut(s) | 2555, 3196 |
| BtgI | CCRYGG | 2 cut(s) | 1057, 1965 |
| BtrI | CACGTC | 1 cut(s) | 2964 |
| BtsIMutI | CAGTG | 1 cut(s) | 874 |
| Cac8I | GCNNGC | 7 cut(s) | 471, 1106, 1110, 2024, 2120, 2657, 2690 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2737 |
| CciI | TCATGA | 4 cut(s) | 294, 1287, 2035, 3106 |
| CfoI | GCGC | 1 cut(s) | 7 |
| Cfr10I | RCCGGY | 1 cut(s) | 2790 |
| Cfr13I | GGNCC | 5 cut(s) | 325, 490, 946, 1054, 1123 |
| ClaI | ATCGAT | 2 cut(s) | 2555, 3196 |
| CseI | GACGC | 4 cut(s) | 222, 252, 853, 1562 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1340, 1375 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1572 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1572 |
| EaeI | YGGCCR | 2 cut(s) | 1117, 2788 |
| Eam1104I | CTCTTC | 5 cut(s) | 904, 1200, 1513, 1539, 3092 |
| EarI | CTCTTC | 5 cut(s) | 904, 1200, 1513, 1539, 3092 |
| EciI | GGCGGA | 1 cut(s) | 2901 |
| Ecl136II | GAGCTC | 3 cut(s) | 896, 1096, 2431 |
| Eco130I | CCWWGG | 3 cut(s) | 576, 1627, 1965 |
| Eco24I | GRGCYC | 3 cut(s) | 898, 1098, 2433 |
| Eco31I | GGTCTC | 1 cut(s) | 3094 |
| Eco32I | GATATC | 1 cut(s) | 193 |
| Eco47I | GGWCC | 5 cut(s) | 325, 490, 946, 1054, 1123 |
| Eco53kI | GAGCTC | 3 cut(s) | 896, 1096, 2431 |
| Eco57I | CTGAAG | 1 cut(s) | 1155 |
| Eco88I | CYCGRG | 1 cut(s) | 612 |
| Eco91I | GGTNACC | 1 cut(s) | 56 |
| EcoICRI | GAGCTC | 3 cut(s) | 896, 1096, 2431 |
| EcoO65I | GGTNACC | 1 cut(s) | 56 |
| EcoRII | CCWGG | 5 cut(s) | 199, 1119, 1638, 2236, 2785 |
| EcoRV | GATATC | 1 cut(s) | 193 |
| EcoT14I | CCWWGG | 3 cut(s) | 576, 1627, 1965 |
| EcoT22I | ATGCAT | 3 cut(s) | 1497, 1650, 1708 |
| EcoT38I | GRGCYC | 3 cut(s) | 898, 1098, 2433 |
| ErhI | CCWWGG | 3 cut(s) | 576, 1627, 1965 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1571, 1603 |
| FaqI | GGGAC | 2 cut(s) | 1391, 2748 |
| FauI | CCCGC | 1 cut(s) | 435 |
| FauNDI | CATATG | 1 cut(s) | 942 |
| FblI | GTMKAC | 3 cut(s) | 936, 1564, 1896 |
| Fnu4HI | GCNGC | 2 cut(s) | 18, 754 |
| FriOI | GRGCYC | 3 cut(s) | 898, 1098, 2433 |
| Fsp4HI | GCNGC | 2 cut(s) | 18, 754 |
| GlaI | GCGC | 1 cut(s) | 6 |
| GluI | GCNGC | 2 cut(s) | 18, 754 |
| GsaI | CCCAGC | 1 cut(s) | 2775 |
| GsuI | CTGGAG | 3 cut(s) | 1197, 2709, 3174 |
| HaeII | RGCGCY | 1 cut(s) | 8 |
| HaeIII | GGCC | 5 cut(s) | 1119, 1807, 1953, 2236, 2790 |
| HapII | CCGG | 3 cut(s) | 220, 990, 2791 |
| HgaI | GACGC | 4 cut(s) | 222, 252, 853, 1562 |
| HhaI | GCGC | 1 cut(s) | 7 |
| Hin1I | GRCGYC | 2 cut(s) | 233, 1573 |
| Hin6I | GCGC | 1 cut(s) | 5 |
| HinP1I | GCGC | 1 cut(s) | 5 |
| HincII | GTYRAC | 1 cut(s) | 788 |
| HindII | GTYRAC | 1 cut(s) | 788 |
| HpaII | CCGG | 3 cut(s) | 220, 990, 2791 |
| HphI | GGTGA | 7 cut(s) | 145, 559, 566, 1235, 1474, 1498, 2579 |
| Hpy188I | TCNGA | 9 cut(s) | 37, 86, 161, 325, 395, 773, 1503, 1543, 2314 |
| Hpy99I | CGWCG | 2 cut(s) | 173, 1578 |
| HpyAV | CCTTC | 9 cut(s) | 166, 740, 832, 838, 866, 1130, 1368, 1597, 1926 |
| HpyCH4III | ACNGT | 6 cut(s) | 62, 1316, 1429, 1667, 1690, 2990 |
| HpyCH4IV | ACGT | 5 cut(s) | 1558, 2285, 2680, 2904, 2963 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 470, 479, 2428, 2796, 2885, 2949 |
| HpySE526I | ACGT | 5 cut(s) | 1558, 2285, 2680, 2904, 2963 |
| Hsp92I | GRCGYC | 2 cut(s) | 233, 1573 |
| HspAI | GCGC | 1 cut(s) | 5 |
| LguI | GCTCTTC | 2 cut(s) | 1200, 1539 |
| LmnI | GCTCC | 2 cut(s) | 750, 1093 |
| Lsp1109I | GCAGC | 2 cut(s) | 29, 765 |
| LweI | GCATC | 7 cut(s) | 399, 946, 1445, 1663, 2091, 2308, 2749 |
| MaeII | ACGT | 5 cut(s) | 1558, 2285, 2680, 2904, 2963 |
| MaeIII | GTNAC | 9 cut(s) | 56, 62, 554, 636, 1045, 1139, 2281, 2849, 3013 |
| MflI | RGATCY | 1 cut(s) | 1926 |
| MhlI | GDGCHC | 5 cut(s) | 861, 898, 1098, 2433, 3156 |
| MlsI | TGGCCA | 1 cut(s) | 1119 |
| MluI | ACGCGT | 1 cut(s) | 261 |
| MluNI | TGGCCA | 1 cut(s) | 1119 |
| MlyI | GAGTC | 3 cut(s) | 527, 624, 2716 |
| MmeI | TCCRAC | 3 cut(s) | 66, 615, 1071 |
| Mox20I | TGGCCA | 1 cut(s) | 1119 |
| Mph1103I | ATGCAT | 3 cut(s) | 1497, 1650, 1708 |
| MroXI | GAANNNNTTC | 7 cut(s) | 1269, 1343, 1527, 2001, 2648, 2681, 3114 |
| MscI | TGGCCA | 1 cut(s) | 1119 |
| MseI | TTAA | 6 cut(s) | 1100, 1790, 2288, 2336, 2516, 2700 |
| MslI | CAYNNNNRTG | 5 cut(s) | 271, 1947, 2117, 2745, 2926 |
| Msp20I | TGGCCA | 1 cut(s) | 1119 |
| MspCI | CTTAAG | 1 cut(s) | 1099 |
| MspI | CCGG | 3 cut(s) | 220, 990, 2791 |
| MspR9I | CCNGG | 6 cut(s) | 201, 990, 1121, 1640, 2238, 2787 |
| Mva1269I | GAATGC | 1 cut(s) | 1434 |
| MvaI | CCWGG | 5 cut(s) | 201, 1121, 1640, 2238, 2787 |
| MvnI | CGCG | 1 cut(s) | 263 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 470, 479, 2428, 2796, 2885, 2949 |
| NciI | CCSGG | 1 cut(s) | 990 |
| NcoI | CCATGG | 1 cut(s) | 1965 |
| NdeI | CATATG | 1 cut(s) | 942 |
| NlaIV | GGNNCC | 2 cut(s) | 278, 2784 |
| NmuCI | GTSAC | 3 cut(s) | 554, 2849, 3013 |
| NsiI | ATGCAT | 3 cut(s) | 1497, 1650, 1708 |
| NspI | RCATGY | 5 cut(s) | 1112, 1495, 1648, 2116, 2122 |
| NspV | TTCGAA | 1 cut(s) | 251 |
| OliI | CACNNNNGTG | 1 cut(s) | 2926 |
| PaeI | GCATGC | 2 cut(s) | 1112, 2122 |
| PaeR7I | CTCGAG | 1 cut(s) | 612 |
| PagI | TCATGA | 4 cut(s) | 294, 1287, 2035, 3106 |
| PciI | ACATGT | 1 cut(s) | 2112 |
| PciSI | GCTCTTC | 2 cut(s) | 1200, 1539 |
| PctI | GAATGC | 1 cut(s) | 1434 |
| PdmI | GAANNNNTTC | 7 cut(s) | 1269, 1343, 1527, 2001, 2648, 2681, 3114 |
| PfoI | TCCNGGA | 2 cut(s) | 988, 1638 |
| PkrI | GCNGC | 2 cut(s) | 19, 755 |
| Ple19I | CGATCG | 1 cut(s) | 3200 |
| PleI | GAGTC | 3 cut(s) | 526, 623, 2716 |
| PpsI | GAGTC | 3 cut(s) | 526, 623, 2716 |
| PscI | ACATGT | 1 cut(s) | 2112 |
| PshAI | GACNNNNGTC | 2 cut(s) | 1892, 2966 |
| Psp124BI | GAGCTC | 3 cut(s) | 898, 1098, 2433 |
| Psp1406I | AACGTT | 2 cut(s) | 2285, 2680 |
| Psp6I | CCWGG | 5 cut(s) | 199, 1119, 1638, 2236, 2785 |
| PspEI | GGTNACC | 1 cut(s) | 56 |
| PspFI | CCCAGC | 1 cut(s) | 2771 |
| PspGI | CCWGG | 5 cut(s) | 199, 1119, 1638, 2236, 2785 |
| PspN4I | GGNNCC | 2 cut(s) | 278, 2784 |
| PspPI | GGNCC | 5 cut(s) | 325, 490, 946, 1054, 1123 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2737 |
| PsuI | RGATCY | 1 cut(s) | 1926 |
| PvuI | CGATCG | 1 cut(s) | 3200 |
| RseI | CAYNNNNRTG | 5 cut(s) | 271, 1947, 2117, 2745, 2926 |
| SacI | GAGCTC | 3 cut(s) | 898, 1098, 2433 |
| SapI | GCTCTTC | 2 cut(s) | 1200, 1539 |
| SaqAI | TTAA | 6 cut(s) | 1100, 1790, 2288, 2336, 2516, 2700 |
| SatI | GCNGC | 2 cut(s) | 18, 754 |
| Sau96I | GGNCC | 5 cut(s) | 325, 490, 946, 1054, 1123 |
| ScaI | AGTACT | 3 cut(s) | 963, 1596, 2597 |
| SchI | GAGTC | 3 cut(s) | 527, 624, 2716 |
| ScrFI | CCNGG | 6 cut(s) | 201, 990, 1121, 1640, 2238, 2787 |
| SduI | GDGCHC | 5 cut(s) | 861, 898, 1098, 2433, 3156 |
| SfaNI | GCATC | 7 cut(s) | 399, 946, 1445, 1663, 2091, 2308, 2749 |
| SfcI | CTRYAG | 2 cut(s) | 206, 1782 |
| Sfr274I | CTCGAG | 1 cut(s) | 612 |
| SfuI | TTCGAA | 1 cut(s) | 251 |
| SinI | GGWCC | 5 cut(s) | 325, 490, 946, 1054, 1123 |
| SlaI | CTCGAG | 1 cut(s) | 612 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 271, 1947, 2117, 2745, 2926 |
| SmlI | CTYRAG | 5 cut(s) | 21, 76, 176, 612, 1099 |
| SmoI | CTYRAG | 5 cut(s) | 21, 76, 176, 612, 1099 |
| SphI | GCATGC | 2 cut(s) | 1112, 2122 |
| SsiI | CCGC | 2 cut(s) | 442, 2912 |
| SspI | AATATT | 2 cut(s) | 1151, 3057 |
| SstI | GAGCTC | 3 cut(s) | 898, 1098, 2433 |
| StyD4I | CCNGG | 6 cut(s) | 199, 988, 1119, 1638, 2236, 2785 |
| StyI | CCWWGG | 3 cut(s) | 576, 1627, 1965 |
| TaaI | ACNGT | 6 cut(s) | 62, 1316, 1429, 1667, 1690, 2990 |
| TaiI | ACGT | 5 cut(s) | 1561, 2288, 2683, 2907, 2966 |
| TatI | WGTACW | 6 cut(s) | 961, 1247, 1594, 1719, 2067, 2595 |
| Tru1I | TTAA | 6 cut(s) | 1100, 1790, 2288, 2336, 2516, 2700 |
| Tru9I | TTAA | 6 cut(s) | 1100, 1790, 2288, 2336, 2516, 2700 |
| TscAI | CASTG | 1 cut(s) | 874 |
| TseFI | GTSAC | 3 cut(s) | 554, 2849, 3013 |
| TseI | GCWGC | 2 cut(s) | 17, 753 |
| Tsp45I | GTSAC | 3 cut(s) | 554, 2849, 3013 |
| TspGWI | ACGGA | 4 cut(s) | 982, 1074, 2345, 3076 |
| TspRI | CASTG | 1 cut(s) | 874 |
| Vha464I | CTTAAG | 1 cut(s) | 1099 |
| VneI | GTGCAC | 1 cut(s) | 857 |
| VpaK11BI | GGWCC | 5 cut(s) | 325, 490, 946, 1054, 1123 |
| XapI | RAATTY | 7 cut(s) | 730, 1774, 1811, 1910, 2365, 2695, 2856 |
| XbaI | TCTAGA | 2 cut(s) | 905, 1990 |
| XceI | RCATGY | 5 cut(s) | 1112, 1495, 1648, 2116, 2122 |
| XhoI | CTCGAG | 1 cut(s) | 612 |
| XmiI | GTMKAC | 3 cut(s) | 936, 1564, 1896 |
| XmnI | GAANNNNTTC | 7 cut(s) | 1269, 1343, 1527, 2001, 2648, 2681, 3114 |
| ZrmI | AGTACT | 3 cut(s) | 963, 1596, 2597 |
| Zsp2I | ATGCAT | 3 cut(s) | 1497, 1650, 1708 |