MD04G1010700.v1.1

TMV resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000036
Physical Location & Seq
Reverse (-)
1179959 .. 1183481
3523 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1010700.v1.1.491

Sequence Viewer

Length: 2124 bp
ATGCATGACATGATTCGTGGCATGGGGAGAGAAATTGTTCGCCTAGAATCAGAAGAGCCTGAGAAACGTAGTAGATTATGGCGCCATAAGGATTCTCTCCAAGTATTGAGGGAAAAGAATGGTTCACAAACAATTCAAGGTCTTGTCCTGGATATGCGTATGCATCCTGCAAACAGTCCAATAAACACAAATGAGACAGCCTTGGAAACCAATGCATTTGAAAGGATGCACAAATTACAATTACTCCATCTTAGTCATGTACGACTAGATGGATGTTACGCAGATTTCCCTACTGGGTTAAGATGGCTGTGTTGGCTTGAATTTCCTTTGGATTCTATACCTATTGATTTTCCTTTGAAGTATCTAGTTGTTCTTGAAATGCAACATAGTAGCTTGAGACAAGTCTGCAAAGGAACAAAATTTCTTCCATCTTTGAAGATCCTTGATGTCAGCCATTCTCATGGCCTCACTGAAATTGTGGACTTCTCACTTTGCCCCAGTCTAGAAGAATTGATTATTGTAGATTGCACAAGCCTAATTGATGTTCATGAATCCATTACAACCCTAGAGAGACTTGTGTACTTGAATATGAAGGATTGCAAGAATCTTAGGATGCTTCCGAAGAACATGTGCATGCTTAAATCACTTGAAACACTCATTTTATCTGGTTGCTCAAATCTTGATGAATTTCCAATGGAGATTCTGAAGAAGATGGAGTCTCTGAAAGTTATTGAAATAGATGAAATTCCATTAAGTGAATTATGGCCAGAAAGAAGTTCAAGTATCTTGGGTTCTTTTCCTTACTCTTTAGTAAAGTTAAATCTCAGTGGGTGCAACCTTTCTGATGATGCCTTTCATAGGGATTTAAGTAACCTATCCTCGTTGCGAACAATAAAGTTAAATAAGAATCCAATTCGTAGTCTGCCAGTTTTCATCAAAAGTTTGAGGAGGCTCGATCATCTCTCTTTCTTGAGCTGTGAGAGGCTCGAATCACTTGTGGGGTTACCAAAAGTACACAAAAATATGGACATACGTGGATGCATATCATTAAAAAAAATAACATATCAATCCTATGGGTTTCAGAATTTGACCGCTAATATGGAGAACTACAATCTAGTTGACTGGGCGTATTGTTACAAGTTAGAGCCTATTGATAGAGTTGATGTGGAAATGACCAAACTTTTGGGCTTGAGCAACTTGGGTTCCATGCCAGCCATTCGAATGAAGAAACCAAACACATTAGAGAATAGATGGAGTCCCGTCCAGGGATTGTACCAATATGGTATATTTAGCACATTTTTTGTTGGGAATGAGGTTCCGGGCCAATTCAGCCATAAAAGTACGATGTCCTCAATATCTTTTATCATGTCTTTGCTTCCAGATCACAAAATCCGAGGCCTGAACATCTTTGCTACCTATGCAAAGGAGAAGAATTCTAATAATGGTTCTACTGACTCTGATTCTGATGTTGACAAATGTTATGAACTTGATCCAATAATGATCAAAGTGAGAAACAAGAGCAAGGGTCTAATGTGGATCTATGGCCCAATTCTCTATGGTATTCCAGGAGAGGGAGAAGATATCATATGGTTGAGCCATTGGAAAATGGAGAATGAATCAATATTACAATGTGGAGATGAAGTGCTTGTTTTAGTACTCATGAGACCTAATGTGTTTCAGCTCAAGGAGTACGGTGTCGAGCTTGTGCAAGAGCACCAAGACAAAATGAGTACACAACACAACACCACTGCAGATCTTCCTGATTATCCTTTTGTCATCGGTGGAGATTTGTCCAGGTGGGAAATTTGTCCAGGATTATACTTACTAGGTATCTCTAAAAAAATTGCTGAAAGTAAAGAAAGCTTTGACTTCTCTTGGCGTAGTTGGTTGAATCGCGTCATCATGGACTCTGATGAAGACGACACAGTCAACGAAGAAGATAAAAAAGATGAAGATACTGGTGAGATACTGAAGAAGAGCAACAGGATGATAGCGCAATTGTGGCGACCAGGGTTGCAGGCAGCAATAACTCTGCCGGTGTATATTCATCAGACAATGAAGAAGAGAAACAGGATGAAGATACAGATACAAAAGAAGAGCAACAAGATGATCAAACACTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

708

Amino Acids

81.42

Weight (kDa)

6.6

Isoelectric Point (pI)

47.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57630 AT1G72930 AT5G38344
fragaria_vesca FvH4_1g27020 FvH4_2g00931 FvH4_2g17330 FvH4_2g17330 FvH4_2g17340 FvH4_2g17350 FvH4_2g20690 FvH4_5g15301 FvH4_5g34194 FvH4_5g38530 FvH4_5g38740 FvH4_5g38740 FvH4_5g38740 FvH4_6g03800 FvH4_7g09791 FvH4_7g09800 FvH4_7g09800 FvH4_7g10510 FvH4_7g10520 FvH4_7g10520 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750
malus_domestica MD02G1217100.v1.1 MD02G1217200.v1.1 MD02G1217400.v1.1 MD02G1217600.v1.1 MD02G1264800.v1.1 MD02G1264900.v1.1 MD02G1302100.v1.1 MD04G1010700.v1.1 MD05G1006800.v1.1 MD05G1140100.v1.1 MD05G1140200.v1.1 MD05G1152200.v1.1 MD07G1073500.v1.1 MD07G1101700.v1.1 MD07G1102200.v1.1 MD07G1103200.v1.1 MD07G1112300.v1.1 MD08G1018200.v1.1 MD08G1018400.v1.1 MD08G1018800.v1.1 MD08G1019000.v1.1 MD08G1019100.v1.1 MD08G1019200.v1.1 MD08G1019300.v1.1 MD08G1019400.v1.1 MD08G1019600.v1.1 MD08G1019900.v1.1 MD08G1020000.v1.1 MD08G1020200.v1.1 MD08G1020500.v1.1 MD08G1020700.v1.1 MD08G1020800.v1.1 MD08G1040700.v1.1 MD11G1112400.v1.1 MD12G1068600.v1.1 MD12G1193200.v1.1 MD13G1050600.v1.1 MD15G1374900.v1.1 MD15G1375100.v1.1 MD15G1416500.v1.1 MD17G1072500.v1.1 MD17G1274200.v1.1 MD17G1274900.v1.1
prunus_persica Prupe.2G121000_v2.0.a1 Prupe.2G121000_v2.0.a1 Prupe.2G125800_v2.0.a1 Prupe.2G126000_v2.0.a1 Prupe.2G126100_v2.0.a1 Prupe.2G126200_v2.0.a1 Prupe.2G126300_v2.0.a1 Prupe.2G126400_v2.0.a1 Prupe.2G126500_v2.0.a1 Prupe.2G126600_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126800_v2.0.a1 Prupe.2G126900_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G135500_v2.0.a1 Prupe.2G135600_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.3G009800_v2.0.a1 Prupe.3G010200_v2.0.a1 Prupe.3G131000_v2.0.a1 Prupe.4G260800_v2.0.a1 Prupe.4G260900_v2.0.a1 Prupe.6G083100_v2.0.a1 Prupe.6G083200_v2.0.a1 Prupe.6G083400_v2.0.a1 Prupe.6G132100_v2.0.a1 Prupe.8G184900_v2.0.a1 Prupe.8G185200_v2.0.a1 Prupe.8G185300_v2.0.a1
pyrus_communis pycom02g17870 pycom02g17880 pycom02g19520 pycom02g22610 pycom02g22630 pycom02g22680 pycom05g13540 pycom05g14680 pycom07g04880 pycom07g04890 pycom07g05690 pycom07g05710 pycom07g05720 pycom07g05750 pycom07g05780 pycom07g06300 pycom07g08320 pycom07g08330 pycom07g08350 pycom07g08360 pycom07g08370 pycom07g08410 pycom07g08420 pycom07g08430 pycom07g08440 pycom07g08470 pycom07g08480 pycom07g08520 pycom07g08550 pycom07g08560 pycom07g08640 pycom07g08660 pycom07g08670 pycom07g08680 pycom07g08690 pycom07g08720 pycom07g08730 pycom07g08790 pycom07g08800 pycom07g08810 pycom07g08860 pycom07g08890 pycom07g09720 pycom08g01590 pycom08g01600 pycom08g01620 pycom08g01630 pycom08g01640 pycom10g12630 pycom15g16490 pycom17g07200 pycom17g07210 pycom17g07220 pycom17g11730 pycom17g11740 pycom17g27340 pycom17g27380
rosa_chinensis RchiOBHm_Chr1g0342571 RchiOBHm_Chr1g0346231 RchiOBHm_Chr1g0346831 RchiOBHm_Chr1g0346891 RchiOBHm_Chr1g0348311 RchiOBHm_Chr1g0348321 RchiOBHm_Chr1g0348331 RchiOBHm_Chr1g0348361 RchiOBHm_Chr1g0348371 RchiOBHm_Chr1g0348381 RchiOBHm_Chr1g0348401 RchiOBHm_Chr1g0348411 RchiOBHm_Chr1g0348421 RchiOBHm_Chr1g0348431 RchiOBHm_Chr2g0130881 RchiOBHm_Chr3g0487331 RchiOBHm_Chr5g0060371 RchiOBHm_Chr6g0246491 RchiOBHm_Chr6g0246871 RchiOBHm_Chr6g0250311 RchiOBHm_Chr6g0250781 RchiOBHm_Chr6g0251431 RchiOBHm_Chr6g0281871 RchiOBHm_Chr6g0281881 RchiOBHm_Chr6g0281931 RchiOBHm_Chr6g0281941 RchiOBHm_Chr6g0281951 RchiOBHm_Chr6g0281971 RchiOBHm_Chr6g0281981 RchiOBHm_Chr7g0240541 RchiOBHm_Chr7g0240631 RchiOBHm_Chr7g0240671
rosa_laevigata RLG00000000627 RLG00000000631 RLG00000000641 RLG00000000645 RLG00000000652 RLG00000000662 RLG00000000663 RLG00000000667 RLG00000000670 RLG00000000702 RLG00000001216 RLG00000001219 RLG00000007678 RLG00000012923 RLG00000012996 RLG00000013243 RLG00000017513 RLG00000017514 RLG00000020936 RLG00000022755 RLG00000023013 RLG00000028646 RLG00000028654 RLG00000028662 RLG00000028665 RLG00000028667 RLG00000028711 RLG00000028714 RLG00000028716 RLG00000028770 RLG00000028771 RLG00000028773 RLG00000028778 RLG00000028798 RLG00000028809 RLG00000028813 RLG00000029334 RLG00000030003 RLG00000033910 RLG00000034358 RLG00000035430
rosa_multiflora Rmu_co8031134.1_g000001 Rmu_co8092796.1_g000001 Rmu_co8130156.1_g000001 Rmu_co8325323.1_g000001 Rmu_co8424083.1_g000002 Rmu_sc0000008.1_g000003 Rmu_sc0000008.1_g000011 Rmu_sc0000008.1_g000015 Rmu_sc0000008.1_g000020 Rmu_sc0000091.1_g000015 Rmu_sc0000091.1_g000018 Rmu_sc0000091.1_g000029 Rmu_sc0000091.1_g000031 Rmu_sc0000391.1_g000004 Rmu_sc0001070.1_g000030 Rmu_sc0001293.1_g000016 Rmu_sc0001674.1_g000006 Rmu_sc0001731.1_g000002 Rmu_sc0001731.1_g000003 Rmu_sc0001731.1_g000005 Rmu_sc0001911.1_g000029 Rmu_sc0001913.1_g000038 Rmu_sc0001955.1_g000025 Rmu_sc0001992.1_g000022 Rmu_sc0001992.1_g000028 Rmu_sc0001992.1_g000031 Rmu_sc0002517.1_g000013 Rmu_sc0002517.1_g000017 Rmu_sc0002551.1_g000022 Rmu_sc0002551.1_g000029 Rmu_sc0002551.1_g000038 Rmu_sc0002705.1_g000015 Rmu_sc0002705.1_g000016 Rmu_sc0002882.1_g000055 Rmu_sc0003232.1_g000027 Rmu_sc0003363.1_g000037 Rmu_sc0003600.1_g000054 Rmu_sc0003918.1_g000011 Rmu_sc0004395.1_g000011 Rmu_sc0005071.1_g000004 Rmu_sc0005255.1_g000018 Rmu_sc0005327.1_g000004 Rmu_sc0005597.1_g000007 Rmu_sc0007060.1_g000007 Rmu_sc0007310.1_g000003 Rmu_sc0007383.1_g000014 Rmu_sc0007799.1_g000003 Rmu_sc0008477.1_g000016 Rmu_sc0010151.1_g000009 Rmu_sc0011217.1_g000005 Rmu_sc0016269.1_g000006 Rmu_sc0021495.1_g000001 Rmu_sc0027364.1_g000001 Rmu_sc0029432.1_g000001 Rmu_sc0041386.1_g000001 Rmu_ssc0000126.1_g000023 Rmu_ssc0000126.1_g000027
rosa_roxburghii Rroxscaffold_1G00006130 Rroxscaffold_1G00023320 Rroxscaffold_1G00038770 Rroxscaffold_2G00119800 Rroxscaffold_2G00121860 Rroxscaffold_3G00219780 Rroxscaffold_3G00219890 Rroxscaffold_4G00306740 Rroxscaffold_4G00306820 Rroxscaffold_4G00307000 Rroxscaffold_4G00307010 Rroxscaffold_4G00307020 Rroxscaffold_4G00308030 Rroxscaffold_4G00308070 Rroxscaffold_4G00308450 Rroxscaffold_4G00308460 Rroxscaffold_4G00315320 Rroxscaffold_5G00352470 Rroxscaffold_5G00371420 Rroxscaffold_6G00392300 Rroxscaffold_6G00394870 Rroxscaffold_6G00394890 Rroxscaffold_7G00186700 Rroxscaffold_7G00194980 Rroxscaffold_7G00216840
rosa_rugosa Rorug01G0076100 Rorug01G0128100 Rorug01G0149000.1 Rorug01G0149500.1 Rorug01G0180000 Rorug01G0180100 Rorug01G0182900 Rorug01G0184000 Rorug01G0184100 Rorug01G0184300 Rorug01G0184600 Rorug01G0184700 Rorug01G0184700 Rorug01G0184900 Rorug01G0185000 Rorug01G0185100 Rorug01G0189300 Rorug01G0194100 Rorug01G0194100 Rorug01G0194200 Rorug01G0194400 Rorug01G0194400 Rorug01G0194500 Rorug02G0090400 Rorug02G0090400 Rorug03G0233000 Rorug03G0233100 Rorug05G0178600 Rorug05G0178700 Rorug05G0579200 Rorug06G0144100 Rorug06G0144300 Rorug06G0144300 Rorug06G0179300 Rorug06G0208800 Rorug07G0323500 Rorug07G0337000
rosa_samantha Rh1AG046100 Rh1AG201400 Rh1AG201800 Rh1AG202100 Rh1AG202600 Rh1AG211500 Rh1AG211800 Rh1AG212200 Rh1AG212500 Rh1AG212600 Rh1AG214200 Rh1BG168000 Rh1BG168300 Rh1BG168500 Rh1BG177900 Rh1BG178200 Rh1BG178300 Rh1BG178800 Rh1BG178900 Rh1CG080900 Rh1CG183300 Rh1CG186300 Rh1CG186700 Rh1CG187000 Rh1CG187300 Rh1CG193400 Rh1CG195800 Rh1CG196000 Rh1CG196100 Rh1CG196400 Rh1CG196500 Rh1CG196800 Rh1CG198800 Rh1CG442600 Rh1DG086200 Rh1DG155400 Rh1DG156200 Rh1DG194000 Rh1DG194300 Rh1DG194900 Rh1DG197000 Rh1DG198800 Rh1DG199000 Rh1DG199200 Rh1DG202000 Rh1DG203900 Rh1DG207600 Rh1DG207900 Rh1DG208000 Rh1DG208500 Rh1DG208600 Rh1DG208700 Rh3CG339100 Rh5AG106500 Rh5AG264800 Rh5AG265300 Rh5CG302800 Rh5DG277900 Rh6AG257600 Rh6AG257700 Rh6BG260500 Rh6BG260700 Rh6CG259600 Rh6CG259700 Rh6DG252100 Rh7DG126900
rosa_wichuraiana Rw0G005780 Rw0G007540 Rw0G007550 Rw0G007560 Rw0G009390 Rw1G016900 Rw1G016930 Rw1G016940 Rw1G016970 Rw1G017860 Rw1G017890 Rw1G017900 Rw1G017910 Rw1G017920 Rw1G017960 Rw1G017970 Rw1G017980 Rw1G018150 Rw4G000830 Rw5G009290 Rw5G018950 Rw5G024850 Rw5G024870 Rw5G040460 Rw6G022290 Rw7G041020 Rw7G041200 Rw7G041360 Rw7G041450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1925
AccB1I GGYRCC 1 cut(s) 81
AccII CGCG 1 cut(s) 1896
AciI CCGC 1 cut(s) 1092
AclWI GGATC 3 cut(s) 433, 1484, 1544
AcoI YGGCCR 1 cut(s) 764
AcsI RAATTY 7 cut(s) 320, 419, 686, 744, 1084, 1432, 1803
AcuI CTGAAG 2 cut(s) 725, 1991
AcyI GRCGYC 1 cut(s) 82
AfaI GTAC 8 cut(s) 261, 581, 1014, 1274, 1342, 1656, 1691, 1732
AfiI CCNNNNNNNGG 3 cut(s) 858, 1265, 1571
AflIII ACRYGT 1 cut(s) 627
AjnI CCWGG 6 cut(s) 147, 1263, 1564, 1793, 1810, 2008
AluBI AGCT 5 cut(s) 393, 975, 1681, 1702, 1863
AluI AGCT 5 cut(s) 393, 975, 1681, 1702, 1863
Alw21I GWGCWC 1 cut(s) 1716
Alw26I GTCTC 5 cut(s) 188, 391, 565, 723, 1657
AlwI GGATC 3 cut(s) 433, 1484, 1544
AoxI GGCC 5 cut(s) 463, 764, 1321, 1396, 1543
ApeKI GCWGC 1 cut(s) 2021
ApoI RAATTY 7 cut(s) 320, 419, 686, 744, 1084, 1432, 1803
ArsI GACNNNNNNTTYG 2 cut(s) 1165, 1197
Asp700I GAANNNNTTC 1 cut(s) 36
AspLEI GCGC 2 cut(s) 84, 1996
AspS9I GGNCC 2 cut(s) 1321, 1544
AsuC2I CCSGG 1 cut(s) 1320
AsuHPI GGTGA 1 cut(s) 1973
AsuII TTCGAA 1 cut(s) 1219
BalI TGGCCA 1 cut(s) 766
BanI GGYRCC 1 cut(s) 81
BbsI GAAGAC 1 cut(s) 1923
Bbv12I GWGCWC 1 cut(s) 1716
BbvI GCAGC 1 cut(s) 2033
BccI CCATC 6 cut(s) 255, 263, 297, 436, 706, 1245
BciT130I CCWGG 6 cut(s) 149, 1265, 1566, 1795, 1812, 2010
BclI TGATCA 2 cut(s) 1500, 2109
BcnI CCSGG 1 cut(s) 1320
BcoDI GTCTC 5 cut(s) 188, 391, 565, 723, 1657
BfaI CTAG 7 cut(s) 44, 266, 365, 503, 566, 1115, 1826
BfmI CTRYAG 1 cut(s) 1749
BfoI RGCGCY 1 cut(s) 85
BglII AGATCT 1 cut(s) 1753
BisI GCNGC 1 cut(s) 2022
BlsI GCNGC 1 cut(s) 2023
BmcAI AGTACT 1 cut(s) 1656
Bme1390I CCNGG 7 cut(s) 149, 1265, 1320, 1566, 1795, 1812, 2010
BmgT120I GGNCC 2 cut(s) 1321, 1544
BmiI GGNNCC 3 cut(s) 83, 1204, 1317
BmrFI CCNGG 7 cut(s) 149, 1265, 1320, 1566, 1795, 1812, 2010
BmrI ACTGGG 3 cut(s) 303, 492, 1132
BmsI GCATC 5 cut(s) 172, 216, 603, 838, 1028
BmuI ACTGGG 3 cut(s) 303, 492, 1132
BpiI GAAGAC 1 cut(s) 1923
Bpu14I TTCGAA 1 cut(s) 1219
BpuEI CTTGAG 4 cut(s) 415, 991, 1210, 1667
BpuMI CCSGG 1 cut(s) 1320
BsaAI YACGTR 1 cut(s) 1034
BsaBI GATNNNNATC 1 cut(s) 1042
BsaHI GRCGYC 1 cut(s) 82
BsaI GGTCTC 1 cut(s) 1657
BsaJI CCNNGG 4 cut(s) 201, 1264, 1393, 2009
BsaXI ACNNNNNCTCC 4 cut(s) 228, 258, 1626, 1656
Bsc4I CCNNNNNNNGG 3 cut(s) 858, 1265, 1571
Bse118I RCCGGY 1 cut(s) 2035
Bse1I ACTGG 5 cut(s) 298, 498, 926, 1127, 1963
Bse8I GATNNNNATC 1 cut(s) 1042
BseBI CCWGG 6 cut(s) 149, 1265, 1566, 1795, 1812, 2010
BseDI CCNNGG 4 cut(s) 201, 1264, 1393, 2009
BseGI GGATG 7 cut(s) 163, 231, 278, 618, 1043, 1992, 2079
BseJI GATNNNNATC 1 cut(s) 1042
BseLI CCNNNNNNNGG 3 cut(s) 858, 1265, 1571
BseMII CTCAG 2 cut(s) 51, 838
BseNI ACTGG 5 cut(s) 298, 498, 926, 1127, 1963
BseRI GAGGAG 1 cut(s) 961
BseXI GCAGC 1 cut(s) 2033
Bsh1236I CGCG 1 cut(s) 1896
BshFI GGCC 5 cut(s) 465, 766, 1323, 1398, 1545
BshNI GGYRCC 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 1716
BsiSI CCGG 2 cut(s) 1319, 2036
BslFI GGGAC 1 cut(s) 1242
BslI CCNNNNNNNGG 3 cut(s) 858, 1265, 1571
BsmAI GTCTC 5 cut(s) 188, 391, 565, 723, 1657
BsmFI GGGAC 1 cut(s) 1242
BsnI GGCC 5 cut(s) 465, 766, 1323, 1398, 1545
Bso31I GGTCTC 1 cut(s) 1657
Bsp119I TTCGAA 1 cut(s) 1219
Bsp1286I GDGCHC 1 cut(s) 1716
Bsp143I GATC 8 cut(s) 438, 955, 1381, 1489, 1500, 1536, 1753, 2109
BspACI CCGC 1 cut(s) 1092
BspANI GGCC 5 cut(s) 465, 766, 1323, 1398, 1545
BspCNI CTCAG 2 cut(s) 52, 837
BspFNI CGCG 1 cut(s) 1896
BspHI TCATGA 2 cut(s) 547, 1659
BspLI GGNNCC 3 cut(s) 83, 1204, 1317
BspMAI CTGCAG 1 cut(s) 1753
BspPI GGATC 3 cut(s) 433, 1484, 1544
BspQI GCTCTTC 3 cut(s) 48, 1970, 2090
BspT104I TTCGAA 1 cut(s) 1219
BspT107I GGYRCC 1 cut(s) 81
BspTNI GGTCTC 1 cut(s) 1657
BsrFI RCCGGY 1 cut(s) 2035
BsrI ACTGG 5 cut(s) 298, 498, 926, 1127, 1963
BssAI RCCGGY 1 cut(s) 2035
BssECI CCNNGG 4 cut(s) 201, 1264, 1393, 2009
BssMI GATC 8 cut(s) 438, 955, 1381, 1489, 1500, 1536, 1753, 2109
BssNI GRCGYC 1 cut(s) 82
BssT1I CCWWGG 1 cut(s) 201
Bst2UI CCWGG 6 cut(s) 149, 1265, 1566, 1795, 1812, 2010
Bst4CI ACNGT 3 cut(s) 176, 1694, 1927
Bst6I CTCTTC 4 cut(s) 48, 1970, 2057, 2090
BstACI GRCGYC 1 cut(s) 82
BstBAI YACGTR 1 cut(s) 1034
BstBI TTCGAA 1 cut(s) 1219
BstC8I GCNNGC 3 cut(s) 635, 1212, 2019
BstDEI CTNAG 4 cut(s) 60, 251, 608, 824
BstEII GGTNACC 1 cut(s) 1002
BstENI CCTNNNNNAGG 1 cut(s) 856
BstF5I GGATG 7 cut(s) 163, 231, 278, 618, 1043, 1992, 2079
BstFNI CGCG 1 cut(s) 1896
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 2 cut(s) 84, 1996
BstKTI GATC 8 cut(s) 441, 958, 1384, 1492, 1503, 1539, 1756, 2112
BstMAI GTCTC 5 cut(s) 188, 391, 565, 723, 1657
BstMBI GATC 8 cut(s) 438, 955, 1381, 1489, 1500, 1536, 1753, 2109
BstMWI GCNNNNNNNGC 4 cut(s) 313, 1329, 1418, 2002
BstNI CCWGG 6 cut(s) 149, 1265, 1566, 1795, 1812, 2010
BstNSI RCATGY 2 cut(s) 631, 637
BstPI GGTNACC 1 cut(s) 1002
BstSCI CCNGG 7 cut(s) 147, 1263, 1318, 1564, 1793, 1810, 2008
BstSFI CTRYAG 1 cut(s) 1749
BstUI CGCG 1 cut(s) 1896
BstV1I GCAGC 1 cut(s) 2033
BstV2I GAAGAC 1 cut(s) 1923
BstX2I RGATCY 3 cut(s) 438, 1536, 1753
BstXI CCANNNNNNTGG 2 cut(s) 461, 1183
BstYI RGATCY 3 cut(s) 438, 1536, 1753
BsuRI GGCC 5 cut(s) 465, 766, 1323, 1398, 1545
BtsCI GGATG 7 cut(s) 163, 231, 278, 618, 1043, 1992, 2079
BtsI GCAGTG 1 cut(s) 1746
BtsIMutI CAGTG 3 cut(s) 468, 832, 1746
Cac8I GCNNGC 3 cut(s) 635, 1212, 2019
CciI TCATGA 2 cut(s) 547, 1659
CfoI GCGC 2 cut(s) 84, 1996
Cfr10I RCCGGY 1 cut(s) 2035
Cfr13I GGNCC 2 cut(s) 1321, 1544
CseI GACGC 1 cut(s) 1885
Csp6I GTAC 8 cut(s) 260, 580, 1013, 1273, 1341, 1655, 1690, 1731
CviQI GTAC 8 cut(s) 260, 580, 1013, 1273, 1341, 1655, 1690, 1731
DdeI CTNAG 4 cut(s) 60, 251, 608, 824
DinI GGCGCC 1 cut(s) 83
DpnI GATC 8 cut(s) 440, 957, 1383, 1491, 1502, 1538, 1755, 2111
DpnII GATC 8 cut(s) 438, 955, 1381, 1489, 1500, 1536, 1753, 2109
DrdI GACNNNNNNGTC 1 cut(s) 1925
DseDI GACNNNNNNGTC 1 cut(s) 1925
EaeI YGGCCR 1 cut(s) 764
Eam1104I CTCTTC 4 cut(s) 48, 1970, 2057, 2090
EarI CTCTTC 4 cut(s) 48, 1970, 2057, 2090
Eco130I CCWWGG 1 cut(s) 201
Eco147I AGGCCT 1 cut(s) 1398
Eco31I GGTCTC 1 cut(s) 1657
Eco32I GATATC 1 cut(s) 1582
Eco57I CTGAAG 2 cut(s) 725, 1991
Eco91I GGTNACC 1 cut(s) 1002
EcoNI CCTNNNNNAGG 1 cut(s) 856
EcoO65I GGTNACC 1 cut(s) 1002
EcoRI GAATTC 1 cut(s) 1432
EcoRII CCWGG 6 cut(s) 147, 1263, 1564, 1793, 1810, 2008
EcoRV GATATC 1 cut(s) 1582
EcoT14I CCWWGG 1 cut(s) 201
EcoT22I ATGCAT 4 cut(s) 6, 165, 217, 1043
EgeI GGCGCC 1 cut(s) 83
EheI GGCGCC 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 201
FaqI GGGAC 1 cut(s) 1242
FauNDI CATATG 1 cut(s) 1586
FbaI TGATCA 2 cut(s) 1500, 2109
Fnu4HI GCNGC 1 cut(s) 2022
FokI GGATG 7 cut(s) 150, 238, 285, 625, 1050, 1999, 2086
Fsp4HI GCNGC 1 cut(s) 2022
FspBI CTAG 7 cut(s) 44, 266, 365, 503, 566, 1115, 1826
GlaI GCGC 2 cut(s) 83, 1995
GluI GCNGC 1 cut(s) 2022
HaeII RGCGCY 1 cut(s) 85
HaeIII GGCC 5 cut(s) 465, 766, 1323, 1398, 1545
HapII CCGG 2 cut(s) 1319, 2036
HgaI GACGC 1 cut(s) 1885
HhaI GCGC 2 cut(s) 84, 1996
Hin1I GRCGYC 1 cut(s) 82
Hin6I GCGC 2 cut(s) 82, 1994
HinP1I GCGC 2 cut(s) 82, 1994
HincII GTYRAC 3 cut(s) 1120, 1471, 1930
HindII GTYRAC 3 cut(s) 1120, 1471, 1930
HindIII AAGCTT 1 cut(s) 1861
HpaII CCGG 2 cut(s) 1319, 2036
HphI GGTGA 1 cut(s) 1973
Hpy166II GTNNAC 8 cut(s) 125, 481, 580, 1015, 1120, 1471, 1733, 1930
Hpy188III TCNNGA 8 cut(s) 374, 503, 548, 680, 970, 1379, 1660, 1760
Hpy8I GTNNAC 8 cut(s) 125, 481, 580, 1015, 1120, 1471, 1733, 1930
HpyAV CCTTC 1 cut(s) 586
HpyCH4III ACNGT 3 cut(s) 176, 1694, 1927
HpyCH4IV ACGT 2 cut(s) 67, 1033
HpyF10VI GCNNNNNNNGC 4 cut(s) 313, 1329, 1418, 2002
HpyF3I CTNAG 4 cut(s) 60, 251, 608, 824
HpySE526I ACGT 2 cut(s) 67, 1033
Hsp92I GRCGYC 1 cut(s) 82
HspAI GCGC 2 cut(s) 82, 1994
KasI GGCGCC 1 cut(s) 81
Ksp22I TGATCA 2 cut(s) 1500, 2109
Kzo9I GATC 8 cut(s) 438, 955, 1381, 1489, 1500, 1536, 1753, 2109
LguI GCTCTTC 3 cut(s) 48, 1970, 2090
Lsp1109I GCAGC 1 cut(s) 2033
LweI GCATC 5 cut(s) 172, 216, 603, 838, 1028
MaeI CTAG 7 cut(s) 44, 266, 365, 503, 566, 1115, 1826
MaeII ACGT 2 cut(s) 67, 1033
MaeIII GTNAC 4 cut(s) 275, 869, 1002, 1133
MalI GATC 8 cut(s) 440, 957, 1383, 1491, 1502, 1538, 1755, 2111
MboI GATC 8 cut(s) 438, 955, 1381, 1489, 1500, 1536, 1753, 2109
MfeI CAATTG 1 cut(s) 1997
MflI RGATCY 3 cut(s) 438, 1536, 1753
MhlI GDGCHC 1 cut(s) 1716
MlsI TGGCCA 1 cut(s) 766
MluNI TGGCCA 1 cut(s) 766
Mly113I GGCGCC 1 cut(s) 82
MlyI GAGTC 4 cut(s) 725, 1264, 1448, 1901
Mox20I TGGCCA 1 cut(s) 766
Mph1103I ATGCAT 4 cut(s) 6, 165, 217, 1043
MroXI GAANNNNTTC 1 cut(s) 36
MscI TGGCCA 1 cut(s) 766
MseI TTAA 7 cut(s) 299, 639, 752, 818, 866, 899, 1049
MslI CAYNNNNRTG 3 cut(s) 459, 632, 1220
Msp20I TGGCCA 1 cut(s) 766
MspI CCGG 2 cut(s) 1319, 2036
MspR9I CCNGG 7 cut(s) 149, 1265, 1320, 1566, 1795, 1812, 2010
MunI CAATTG 1 cut(s) 1997
MvaI CCWGG 6 cut(s) 149, 1265, 1566, 1795, 1812, 2010
MvnI CGCG 1 cut(s) 1896
MwoI GCNNNNNNNGC 4 cut(s) 313, 1329, 1418, 2002
NarI GGCGCC 1 cut(s) 82
NciI CCSGG 1 cut(s) 1320
NdeI CATATG 1 cut(s) 1586
NdeII GATC 8 cut(s) 438, 955, 1381, 1489, 1500, 1536, 1753, 2109
NlaIV GGNNCC 3 cut(s) 83, 1204, 1317
NsiI ATGCAT 4 cut(s) 6, 165, 217, 1043
NspI RCATGY 2 cut(s) 631, 637
NspV TTCGAA 1 cut(s) 1219
PaeI GCATGC 1 cut(s) 637
PagI TCATGA 2 cut(s) 547, 1659
PceI AGGCCT 1 cut(s) 1398
PciI ACATGT 1 cut(s) 627
PciSI GCTCTTC 3 cut(s) 48, 1970, 2090
PdmI GAANNNNTTC 1 cut(s) 36
PflFI GACNNNGTC 1 cut(s) 1925
PfoI TCCNGGA 3 cut(s) 147, 1564, 1810
PkrI GCNGC 1 cut(s) 2023
PleI GAGTC 4 cut(s) 724, 1263, 1448, 1901
PluTI GGCGCC 1 cut(s) 85
PpsI GAGTC 4 cut(s) 724, 1263, 1448, 1901
Ppu21I YACGTR 1 cut(s) 1034
PscI ACATGT 1 cut(s) 627
Psp6I CCWGG 6 cut(s) 147, 1263, 1564, 1793, 1810, 2008
PspEI GGTNACC 1 cut(s) 1002
PspGI CCWGG 6 cut(s) 147, 1263, 1564, 1793, 1810, 2008
PspN4I GGNNCC 3 cut(s) 83, 1204, 1317
PspPI GGNCC 2 cut(s) 1321, 1544
PsrI GAACNNNNNNTAC 2 cut(s) 775, 807
PstI CTGCAG 1 cut(s) 1753
PsuI RGATCY 3 cut(s) 438, 1536, 1753
PsyI GACNNNGTC 1 cut(s) 1925
RsaI GTAC 8 cut(s) 261, 581, 1014, 1274, 1342, 1656, 1691, 1732
RsaNI GTAC 8 cut(s) 260, 580, 1013, 1273, 1341, 1655, 1690, 1731
RseI CAYNNNNRTG 3 cut(s) 459, 632, 1220
SapI GCTCTTC 3 cut(s) 48, 1970, 2090
SaqAI TTAA 7 cut(s) 299, 639, 752, 818, 866, 899, 1049
SatI GCNGC 1 cut(s) 2022
Sau3AI GATC 8 cut(s) 438, 955, 1381, 1489, 1500, 1536, 1753, 2109
Sau96I GGNCC 2 cut(s) 1321, 1544
ScaI AGTACT 1 cut(s) 1656
SchI GAGTC 4 cut(s) 725, 1264, 1448, 1901
ScrFI CCNGG 7 cut(s) 149, 1265, 1320, 1566, 1795, 1812, 2010
SduI GDGCHC 1 cut(s) 1716
SfaNI GCATC 5 cut(s) 172, 216, 603, 838, 1028
SfcI CTRYAG 1 cut(s) 1749
SfoI GGCGCC 1 cut(s) 83
SfuI TTCGAA 1 cut(s) 1219
SmiMI CAYNNNNRTG 3 cut(s) 459, 632, 1220
SmlI CTYRAG 4 cut(s) 394, 970, 1189, 1682
SmoI CTYRAG 4 cut(s) 394, 970, 1189, 1682
SphI GCATGC 1 cut(s) 637
SseBI AGGCCT 1 cut(s) 1398
SsiI CCGC 1 cut(s) 1092
SspDI GGCGCC 1 cut(s) 81
SspI AATATT 1 cut(s) 1623
SspMI CTAG 7 cut(s) 44, 266, 365, 503, 566, 1115, 1826
StuI AGGCCT 1 cut(s) 1398
StyD4I CCNGG 7 cut(s) 147, 1263, 1318, 1564, 1793, 1810, 2008
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 3 cut(s) 176, 1694, 1927
TaiI ACGT 2 cut(s) 70, 1036
TaqI TCGA 4 cut(s) 954, 987, 1219, 1698
TatI WGTACW 4 cut(s) 579, 1012, 1654, 1730
Tru1I TTAA 7 cut(s) 299, 639, 752, 818, 866, 899, 1049
Tru9I TTAA 7 cut(s) 299, 639, 752, 818, 866, 899, 1049
TscAI CASTG 3 cut(s) 475, 832, 1753
TseI GCWGC 1 cut(s) 2021
TspRI CASTG 3 cut(s) 475, 832, 1753
Tth111I GACNNNGTC 1 cut(s) 1925
XagI CCTNNNNNAGG 1 cut(s) 856
XapI RAATTY 7 cut(s) 320, 419, 686, 744, 1084, 1432, 1803
XbaI TCTAGA 1 cut(s) 502
XceI RCATGY 2 cut(s) 631, 637
XmnI GAANNNNTTC 1 cut(s) 36
XspI CTAG 7 cut(s) 44, 266, 365, 503, 566, 1115, 1826
ZrmI AGTACT 1 cut(s) 1656
Zsp2I ATGCAT 4 cut(s) 6, 165, 217, 1043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.