MD17G1072500.v1.1

TMV resistance protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
5814939 .. 5820006
5068 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1072500.v1.1.491

Sequence Viewer

Length: 3843 bp
ATGGCTCTTCTGAGATCAGCAGCTTTTAAAGATTCCAATTCTTTGTCTGAACGTTGTCGTTATCACGTGTTCTTGAGTTTCAGAGGGGAAGACACACGCAAGACTTTTACGGACCACCTCTACACAGCCTTGGTCAATGCAGGATTCCAAACGTTCCGTGACAACGATGAGCTCGAGAGGGGAGAAGACATCAAGCCGGAACTGGAGAAAGCGATCCGGCAGTCACAAACTTGTGTAATTGTGTTTTCCAAAGAATACGCGTCTTCCAGATGGTGCCTTGACGAGCTTTTGATCATCCTCGAGCGCAAGAGGACTAACAAAGAGTTTGTAGTTCTACCTGTCTTCTACGACGTCGATCCATCCCAGCTGAGGAAGCAGACGGGAAGTTTTGCAGAAGCATTTTCCAGGCACCAAAGTGCTCAGTCTTCCAGCAAGGTCAGCAGATGGAGGGCGGCACTTGCACAAGTTGCAGATTTAGCTGGCATGGTGTTACCAAATCAAGCTGACGGGTATGAGTCGAAGTTTATCAAAAAGATTGTTAAAGTCATAGAAGGAAAACTAAGGCGGGTCACACCCTTAAGTGTTTCCCCCAAGTTGATTGGAATTCAATCTCGAGCGAAAAGAATCGATTCCTGGTTAAAAGATGGATCGACTGATGTTGGCGTACTTGTACTTTATGGGATCAGTGGAGTTGGCAAGACGACCATTGCGAAATCTGTTTATAATTCAAACTTTAGAAGATTTGAAGGAAGAAGTTTTGTTGAAAATATCCGAGAACTTTCGGAACAACCAAATGGCTTGGTACAAATACAAAAACATCTTCTTTCTGATATTTTGAATGGGAGAAATGTGGAAATACACAGCGTTAGCGAGGGAGTATCTAAGGTTGAAGATGCCATCAGATCGAAGAGGGTTCTTCTTATCCTCGATGATGTGGATCATACGAACCAATTGGATGCGGTATTTAGGATGAAACATTGTTTTTATCCGGGAAGTAAGATCATCATAACAACTAGGCGTGCAAAGTTGTTAAAGCCTCAACATGCTTCTGAGGTGCATAATGTTGAACCTTTGAGTTACAATGAATCTATGGAACTCTTCAGTTGGCATGCTTTTGAACAAGATCATCCCGTTGATGGTTTCATGAAACATTCAGAAGAGGTGGTAGATCACTGTGGAGGACTTCCATTAGCTCTTCGAGTTTTGGGTTCTTCTCTAATGGGGGAAAGTATAACTGTATGGCAAAGTACGTTAGAGAAATTAAAGGCTATTCCAGATGGTCAAATCATGAAGAAACTCAGATCAAGCTACGACTCTTTACAAGACAATCATGATCGAGATTTATTTCTCCATATTGCTTGTTTCTTTGTTGGAAAGGACAAAGATTGCGTTGTTAGGATTTTAGATGAGTGTCAGTTCTACACTGTTGTTGGAATTCAAAATCTCGTCGACAGGTGCTTAGTGACAATTCATCGATGTGAGTGGCACAAATATTGCAAGATTCAGATGCATGACTTAGTCCGTGACATGGGCAGAGAAATTGTTCGCTCAGAATCAGAGGAGCCGGAGAAGCGTAGTAGATTATGGCATCATAAAGATTCTTTCAAAGTATTGAGAGAAAAAAATGGTACCCAAACAATCTGCGGTCTTGTCCTGAATATGTTTCCTGCAGACACCACTTCAATGAATTCGGATGAGATGGTCTTCGAAACCGAGGCATTTACAAGGATGCACAAACTCAAATTACTCCATCTCAGTCATGTACAATTGAATGGATCGTATGCAGAATTTCCGACAGAATTGAGATGGTTGTGTTGGCATGAATTTTCTTTGAATTCCATACCCATCAATTTTCCGTTGGAGAATCTGGTTGTTCTTGAAATGCATCATAGCTCCTTGAGACAAGTTTGGAGGGGAACAAAGTGCCTTCCATCGTTAAAGATCCTTGATCTTAGTCATTCTCATGACCTTAGAGAAAGTGTTGCTGACTTCTCACTTTTCCCCAATTTAGAAAAACTGATTCTTGTAGATTGTCGGAATCTGATTGATGTCCATGAATCCATTGAAAGCCTAGAGAAGCTTGTTTACTTGAATATGAAGGATTGCAAAAGTATTAGGATGTTGAACAAGAACATTGGTAAGCTCAAGTTACTCAAAACACTCATTTTATCTGGTTGTTCGAATCTTAACGAGTCTTCACTGGACATGATGAGGAACATGGAGTGTCTGAAAGTGCTTGAAGCAGATGAAATTCCAGTGAATCAAGTACTTACTGCTGGTGGGCAGTTGATTGAATCTTGGCCTGCGAGAAGTTCATATATTTTTTGGACCTCTTTACCATGTTCTTTAGTATCTTTAAGTCTTAGCGGGCGCAATCTCTCGAATGAAGATTTTCCAATGGAACTTGGTAACCTATCTTCCTTGGAAAAATTAAATCTACAGTCCACTTCAGTTTGTAGCCTACCAAGTTGCATCAAAGGGCTAAAGAAGCTTTGCGAACTCAACTTTGGCGGGTGCAAGAGTCTTAAAGAACTTGTAGGGCTACCAAAAGTGAAGCATGTGTTTGTGACTGATTGCACATCATTGGAAAAGGTAACATATGAATCATTTTCATCCTACAAAAATAGTTTAATCTTGTTTCGTCACAACCGCAGCCTAGTTGAGGCGGAGTATATGTTCAGACTAGAACCCATTGGAAAAGTTGATACAGAAATGATCAACCTGTTGGAATTGCGCAATTATTTGGAATCCACGGCAACCATTAAGATGCACGTCCCATTTTCATATGGAAAGATTTCGCAAGACTATGAGTCTCGTCCCATCCAGGGACTCTATGAATATGGTATATTCAGCACATTTCTTCCAGGGAATCAGGTTCCAGGTCGATTTGACCATAGAAGTAGTGATGCAGGGACCTCAATATCCTGTAGAGTGCCTTCACTGCCTCCAAATTATGTAATTCGAGGCTTGAACATCTTTGCTGTCTATGCACTTTCCGAACATTCTTCTTTTTATGCATTCGATAATCCATTATTTAAGAAAGTATGGAATAAGAGCAAGAGTCTAAAGTGGATTTATAACCCGCAAGTGTACGGGATTCCCAGGGAGGGAGAAGACATGGTATGGTTAAGCCATTGGAAGTTGGAAGGTGAGTTATTAGGTGGCAATGAAGTTGTTGCTTCAGTGTTTATGCAACCAGGTGTGTTTCACTTGAAGGAGTTTGGCGTCCAGCTTGTGTGTGAAAAACACGAAAATAATATTACGAGTAAGCAACACAACACGTGGACGGATCCTTATTATCCACGTGTCATCAGAGGAGATTTGTCATCACGTGAGGCGACAGAAGGAACGTATTGGCTCTGCTGGAGACCACACTCACCTGAAGCTATTGCTTGGTTCGATTACCTCGATAGGGACTTTGATGATCATGAATTAGATACAGTGACGCAACTTGGAGAAGAGGAAGAGGAAGAGGAAGAGGAAGAAGAAGAAAAGCAACTGCAGGATGACCCCATGCTTCTTCCAGCAGCAACAGGCAGACTTCCCTCAGATTCAGAAGATGAAAATAATGGCTCAAAGAACGACATAGAAATATCCGAGAGTTCAAAGAAGGGATCTCAAGGTAATGATAACAATGTTCAATCAGCTGCAAAAGATGTTGCAGATGAAGAATTGATGCAATGCTTGGAAATTTTGAACAACATGGAGGAACTTGACGATGATACTTATTCAAAAGCTTTGAAGCTTTTCCATGACGATGCAACTTGGAGAAAGCTATTTGTGAGCATGCCTGATAAAAGGAAGAAACCTTTCATCCTCAGGCTTGGTTCACGTAAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1281

Amino Acids

146.52

Weight (kDa)

5.99

Isoelectric Point (pI)

49.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 21 - 193 4.2e-51 TIR domain
TIR_2 PF13676 23 - 123 3.3e-18 TIR domain
NB-ARC PF00931 206 - 374 1e-20 NB-ARC domain
WHD_ROQ1 PF23282 443 - 519 7.8e-18 Disease resistance protein Roq1-like, winged-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57630 AT1G72930 AT5G38344
fragaria_vesca FvH4_1g27020 FvH4_2g00931 FvH4_2g17330 FvH4_2g17330 FvH4_2g17340 FvH4_2g17350 FvH4_2g20690 FvH4_5g15301 FvH4_5g34194 FvH4_5g38530 FvH4_5g38740 FvH4_5g38740 FvH4_5g38740 FvH4_6g03800 FvH4_7g09791 FvH4_7g09800 FvH4_7g09800 FvH4_7g10510 FvH4_7g10520 FvH4_7g10520 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750
malus_domestica MD02G1217100.v1.1 MD02G1217200.v1.1 MD02G1217400.v1.1 MD02G1217600.v1.1 MD02G1264800.v1.1 MD02G1264900.v1.1 MD02G1302100.v1.1 MD04G1010700.v1.1 MD05G1006800.v1.1 MD05G1140100.v1.1 MD05G1140200.v1.1 MD05G1152200.v1.1 MD07G1073500.v1.1 MD07G1101700.v1.1 MD07G1102200.v1.1 MD07G1103200.v1.1 MD07G1112300.v1.1 MD08G1018200.v1.1 MD08G1018400.v1.1 MD08G1018800.v1.1 MD08G1019000.v1.1 MD08G1019100.v1.1 MD08G1019200.v1.1 MD08G1019300.v1.1 MD08G1019400.v1.1 MD08G1019600.v1.1 MD08G1019900.v1.1 MD08G1020000.v1.1 MD08G1020200.v1.1 MD08G1020500.v1.1 MD08G1020700.v1.1 MD08G1020800.v1.1 MD08G1040700.v1.1 MD11G1112400.v1.1 MD12G1068600.v1.1 MD12G1193200.v1.1 MD13G1050600.v1.1 MD15G1374900.v1.1 MD15G1375100.v1.1 MD15G1416500.v1.1 MD17G1072500.v1.1 MD17G1274200.v1.1 MD17G1274900.v1.1
prunus_persica Prupe.2G121000_v2.0.a1 Prupe.2G121000_v2.0.a1 Prupe.2G125800_v2.0.a1 Prupe.2G126000_v2.0.a1 Prupe.2G126100_v2.0.a1 Prupe.2G126200_v2.0.a1 Prupe.2G126300_v2.0.a1 Prupe.2G126400_v2.0.a1 Prupe.2G126500_v2.0.a1 Prupe.2G126600_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126800_v2.0.a1 Prupe.2G126900_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G135500_v2.0.a1 Prupe.2G135600_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.3G009800_v2.0.a1 Prupe.3G010200_v2.0.a1 Prupe.3G131000_v2.0.a1 Prupe.4G260800_v2.0.a1 Prupe.4G260900_v2.0.a1 Prupe.6G083100_v2.0.a1 Prupe.6G083200_v2.0.a1 Prupe.6G083400_v2.0.a1 Prupe.6G132100_v2.0.a1 Prupe.8G184900_v2.0.a1 Prupe.8G185200_v2.0.a1 Prupe.8G185300_v2.0.a1
pyrus_communis pycom02g17870 pycom02g17880 pycom02g19520 pycom02g22610 pycom02g22630 pycom02g22680 pycom05g13540 pycom05g14680 pycom07g04880 pycom07g04890 pycom07g05690 pycom07g05710 pycom07g05720 pycom07g05750 pycom07g05780 pycom07g06300 pycom07g08320 pycom07g08330 pycom07g08350 pycom07g08360 pycom07g08370 pycom07g08410 pycom07g08420 pycom07g08430 pycom07g08440 pycom07g08470 pycom07g08480 pycom07g08520 pycom07g08550 pycom07g08560 pycom07g08640 pycom07g08660 pycom07g08670 pycom07g08680 pycom07g08690 pycom07g08720 pycom07g08730 pycom07g08790 pycom07g08800 pycom07g08810 pycom07g08860 pycom07g08890 pycom07g09720 pycom08g01590 pycom08g01600 pycom08g01620 pycom08g01630 pycom08g01640 pycom10g12630 pycom15g16490 pycom17g07200 pycom17g07210 pycom17g07220 pycom17g11730 pycom17g11740 pycom17g27340 pycom17g27380
rosa_chinensis RchiOBHm_Chr1g0342571 RchiOBHm_Chr1g0346231 RchiOBHm_Chr1g0346831 RchiOBHm_Chr1g0346891 RchiOBHm_Chr1g0348311 RchiOBHm_Chr1g0348321 RchiOBHm_Chr1g0348331 RchiOBHm_Chr1g0348361 RchiOBHm_Chr1g0348371 RchiOBHm_Chr1g0348381 RchiOBHm_Chr1g0348401 RchiOBHm_Chr1g0348411 RchiOBHm_Chr1g0348421 RchiOBHm_Chr1g0348431 RchiOBHm_Chr2g0130881 RchiOBHm_Chr3g0487331 RchiOBHm_Chr5g0060371 RchiOBHm_Chr6g0246491 RchiOBHm_Chr6g0246871 RchiOBHm_Chr6g0250311 RchiOBHm_Chr6g0250781 RchiOBHm_Chr6g0251431 RchiOBHm_Chr6g0281871 RchiOBHm_Chr6g0281881 RchiOBHm_Chr6g0281931 RchiOBHm_Chr6g0281941 RchiOBHm_Chr6g0281951 RchiOBHm_Chr6g0281971 RchiOBHm_Chr6g0281981 RchiOBHm_Chr7g0240541 RchiOBHm_Chr7g0240631 RchiOBHm_Chr7g0240671
rosa_laevigata RLG00000000627 RLG00000000631 RLG00000000641 RLG00000000645 RLG00000000652 RLG00000000662 RLG00000000663 RLG00000000667 RLG00000000670 RLG00000000702 RLG00000001216 RLG00000001219 RLG00000007678 RLG00000012923 RLG00000012996 RLG00000013243 RLG00000017513 RLG00000017514 RLG00000020936 RLG00000022755 RLG00000023013 RLG00000028646 RLG00000028654 RLG00000028662 RLG00000028665 RLG00000028667 RLG00000028711 RLG00000028714 RLG00000028716 RLG00000028770 RLG00000028771 RLG00000028773 RLG00000028778 RLG00000028798 RLG00000028809 RLG00000028813 RLG00000029334 RLG00000030003 RLG00000033910 RLG00000034358 RLG00000035430
rosa_multiflora Rmu_co8031134.1_g000001 Rmu_co8092796.1_g000001 Rmu_co8130156.1_g000001 Rmu_co8325323.1_g000001 Rmu_co8424083.1_g000002 Rmu_sc0000008.1_g000003 Rmu_sc0000008.1_g000011 Rmu_sc0000008.1_g000015 Rmu_sc0000008.1_g000020 Rmu_sc0000091.1_g000015 Rmu_sc0000091.1_g000018 Rmu_sc0000091.1_g000029 Rmu_sc0000091.1_g000031 Rmu_sc0000391.1_g000004 Rmu_sc0001070.1_g000030 Rmu_sc0001293.1_g000016 Rmu_sc0001674.1_g000006 Rmu_sc0001731.1_g000002 Rmu_sc0001731.1_g000003 Rmu_sc0001731.1_g000005 Rmu_sc0001911.1_g000029 Rmu_sc0001913.1_g000038 Rmu_sc0001955.1_g000025 Rmu_sc0001992.1_g000022 Rmu_sc0001992.1_g000028 Rmu_sc0001992.1_g000031 Rmu_sc0002517.1_g000013 Rmu_sc0002517.1_g000017 Rmu_sc0002551.1_g000022 Rmu_sc0002551.1_g000029 Rmu_sc0002551.1_g000038 Rmu_sc0002705.1_g000015 Rmu_sc0002705.1_g000016 Rmu_sc0002882.1_g000055 Rmu_sc0003232.1_g000027 Rmu_sc0003363.1_g000037 Rmu_sc0003600.1_g000054 Rmu_sc0003918.1_g000011 Rmu_sc0004395.1_g000011 Rmu_sc0005071.1_g000004 Rmu_sc0005255.1_g000018 Rmu_sc0005327.1_g000004 Rmu_sc0005597.1_g000007 Rmu_sc0007060.1_g000007 Rmu_sc0007310.1_g000003 Rmu_sc0007383.1_g000014 Rmu_sc0007799.1_g000003 Rmu_sc0008477.1_g000016 Rmu_sc0010151.1_g000009 Rmu_sc0011217.1_g000005 Rmu_sc0016269.1_g000006 Rmu_sc0021495.1_g000001 Rmu_sc0027364.1_g000001 Rmu_sc0029432.1_g000001 Rmu_sc0041386.1_g000001 Rmu_ssc0000126.1_g000023 Rmu_ssc0000126.1_g000027
rosa_roxburghii Rroxscaffold_1G00006130 Rroxscaffold_1G00023320 Rroxscaffold_1G00038770 Rroxscaffold_2G00119800 Rroxscaffold_2G00121860 Rroxscaffold_3G00219780 Rroxscaffold_3G00219890 Rroxscaffold_4G00306740 Rroxscaffold_4G00306820 Rroxscaffold_4G00307000 Rroxscaffold_4G00307010 Rroxscaffold_4G00307020 Rroxscaffold_4G00308030 Rroxscaffold_4G00308070 Rroxscaffold_4G00308450 Rroxscaffold_4G00308460 Rroxscaffold_4G00315320 Rroxscaffold_5G00352470 Rroxscaffold_5G00371420 Rroxscaffold_6G00392300 Rroxscaffold_6G00394870 Rroxscaffold_6G00394890 Rroxscaffold_7G00186700 Rroxscaffold_7G00194980 Rroxscaffold_7G00216840
rosa_rugosa Rorug01G0076100 Rorug01G0128100 Rorug01G0149000.1 Rorug01G0149500.1 Rorug01G0180000 Rorug01G0180100 Rorug01G0182900 Rorug01G0184000 Rorug01G0184100 Rorug01G0184300 Rorug01G0184600 Rorug01G0184700 Rorug01G0184700 Rorug01G0184900 Rorug01G0185000 Rorug01G0185100 Rorug01G0189300 Rorug01G0194100 Rorug01G0194100 Rorug01G0194200 Rorug01G0194400 Rorug01G0194400 Rorug01G0194500 Rorug02G0090400 Rorug02G0090400 Rorug03G0233000 Rorug03G0233100 Rorug05G0178600 Rorug05G0178700 Rorug05G0579200 Rorug06G0144100 Rorug06G0144300 Rorug06G0144300 Rorug06G0179300 Rorug06G0208800 Rorug07G0323500 Rorug07G0337000
rosa_samantha Rh1AG046100 Rh1AG201400 Rh1AG201800 Rh1AG202100 Rh1AG202600 Rh1AG211500 Rh1AG211800 Rh1AG212200 Rh1AG212500 Rh1AG212600 Rh1AG214200 Rh1BG168000 Rh1BG168300 Rh1BG168500 Rh1BG177900 Rh1BG178200 Rh1BG178300 Rh1BG178800 Rh1BG178900 Rh1CG080900 Rh1CG183300 Rh1CG186300 Rh1CG186700 Rh1CG187000 Rh1CG187300 Rh1CG193400 Rh1CG195800 Rh1CG196000 Rh1CG196100 Rh1CG196400 Rh1CG196500 Rh1CG196800 Rh1CG198800 Rh1CG442600 Rh1DG086200 Rh1DG155400 Rh1DG156200 Rh1DG194000 Rh1DG194300 Rh1DG194900 Rh1DG197000 Rh1DG198800 Rh1DG199000 Rh1DG199200 Rh1DG202000 Rh1DG203900 Rh1DG207600 Rh1DG207900 Rh1DG208000 Rh1DG208500 Rh1DG208600 Rh1DG208700 Rh3CG339100 Rh5AG106500 Rh5AG264800 Rh5AG265300 Rh5CG302800 Rh5DG277900 Rh6AG257600 Rh6AG257700 Rh6BG260500 Rh6BG260700 Rh6CG259600 Rh6CG259700 Rh6DG252100 Rh7DG126900
rosa_wichuraiana Rw0G005780 Rw0G007540 Rw0G007550 Rw0G007560 Rw0G009390 Rw1G016900 Rw1G016930 Rw1G016940 Rw1G016970 Rw1G017860 Rw1G017890 Rw1G017900 Rw1G017910 Rw1G017920 Rw1G017960 Rw1G017970 Rw1G017980 Rw1G018150 Rw4G000830 Rw5G009290 Rw5G018950 Rw5G024850 Rw5G024870 Rw5G040460 Rw6G022290 Rw7G041020 Rw7G041200 Rw7G041360 Rw7G041450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 723, 3078
AatII GACGTC 1 cut(s) 354
Acc16I TGCGCA 1 cut(s) 2735
Acc65I GGTACC 1 cut(s) 1628
AccB1I GGYRCC 3 cut(s) 273, 408, 1628
AccI GTMKAC 1 cut(s) 1449
AccII CGCG 1 cut(s) 260
AciI CCGC 9 cut(s) 452, 565, 959, 1644, 2367, 2511, 2650, 2666, 3083
AclI AACGTT 2 cut(s) 52, 152
AcsI RAATTY 8 cut(s) 603, 1434, 1687, 1787, 1823, 1834, 2250, 3690
AcuI CTGAAG 4 cut(s) 1084, 2433, 3165, 3402
AcvI CACGTG 4 cut(s) 67, 3282, 3305, 3332
AcyI GRCGYC 2 cut(s) 351, 3225
AfaI GTAC 8 cut(s) 666, 672, 804, 1249, 1630, 1764, 2268, 3092
AfiI CCNNNNNNNGG 7 cut(s) 369, 1136, 1528, 2662, 2825, 3107, 3412
AflII CTTAAG 1 cut(s) 577
AflIII ACRYGT 4 cut(s) 66, 258, 3279, 3304
AhdI GACNNNNNGTC 1 cut(s) 2809
AjiI CACGTC 1 cut(s) 2773
AjnI CCWGG 7 cut(s) 404, 632, 2823, 2863, 2878, 3101, 3196
AjuI GAANNNNNNNTTGG 2 cut(s) 2490, 2522
AleI CACNNNNGTG 1 cut(s) 414
AloI GAACNNNNNNTCC 2 cut(s) 2660, 2692
Alw21I GWGCWC 2 cut(s) 174, 421
Alw26I GTCTC 3 cut(s) 1894, 2817, 3361
Ama87I CYCGRG 3 cut(s) 173, 299, 612
AoxI GGCC 1 cut(s) 2300
ApeKI GCWGC 4 cut(s) 20, 2652, 3527, 3647
ApoI RAATTY 8 cut(s) 603, 1434, 1687, 1787, 1823, 1834, 2250, 3690
Asp700I GAANNNNTTC 6 cut(s) 628, 1542, 2391, 2794, 3746, 3809
Asp718I GGTACC 1 cut(s) 1628
AspLEI GCGC 3 cut(s) 306, 2373, 2736
AspS9I GGNCC 3 cut(s) 112, 2328, 2913
AsuC2I CCSGG 1 cut(s) 990
AsuHPI GGTGA 2 cut(s) 3161, 3369
AsuII TTCGAA 2 cut(s) 1707, 2180
AvaI CYCGRG 3 cut(s) 173, 299, 612
AvaII GGWCC 3 cut(s) 112, 2328, 2913
AxyI CCTNAGG 1 cut(s) 3818
BamHI GGATCC 1 cut(s) 3289
BanI GGYRCC 3 cut(s) 273, 408, 1628
BanII GRGCYC 1 cut(s) 174
BarI GAAGNNNNNNTAC 6 cut(s) 2069, 2101, 2401, 2433, 2920, 2952
BbrPI CACGTG 4 cut(s) 67, 3282, 3305, 3332
BbsI GAAGAC 8 cut(s) 96, 192, 255, 334, 417, 1696, 2187, 3120
Bbv12I GWGCWC 2 cut(s) 174, 421
BbvCI CCTCAGC 1 cut(s) 368
BbvI GCAGC 4 cut(s) 32, 2664, 3539, 3634
BceAI ACGGC 1 cut(s) 2769
BciT130I CCWGG 7 cut(s) 406, 634, 2825, 2865, 2880, 3103, 3198
BclI TGATCA 3 cut(s) 291, 2715, 3424
BcnI CCSGG 1 cut(s) 990
BcoDI GTCTC 3 cut(s) 1894, 2817, 3361
BfaI CTAG 4 cut(s) 1014, 2072, 2657, 2684
BfmI CTRYAG 4 cut(s) 1668, 2438, 2926, 3500
BfrI CTTAAG 1 cut(s) 577
BisI GCNGC 5 cut(s) 21, 453, 2653, 3528, 3648
BlsI GCNGC 5 cut(s) 22, 454, 2654, 3529, 3649
BmcAI AGTACT 1 cut(s) 2268
Bme1390I CCNGG 8 cut(s) 406, 634, 990, 2825, 2865, 2880, 3103, 3198
Bme18I GGWCC 3 cut(s) 112, 2328, 2913
BmeRI GACNNNNNGTC 1 cut(s) 2809
BmeT110I CYCGRG 3 cut(s) 173, 299, 612
BmgBI CACGTC 1 cut(s) 2773
BmgT120I GGNCC 3 cut(s) 112, 2328, 2913
BmiI GGNNCC 7 cut(s) 275, 410, 1563, 1630, 2877, 2914, 3291
BmrFI CCNGG 8 cut(s) 406, 634, 990, 2825, 2865, 2880, 3103, 3198
BpiI GAAGAC 8 cut(s) 96, 192, 255, 334, 417, 1696, 2187, 3120
BpmI CTGGAG 2 cut(s) 224, 3385
Bpu10I CCTNAGC 1 cut(s) 368
Bpu14I TTCGAA 2 cut(s) 1707, 2180
BpuEI CTTGAG 4 cut(s) 94, 1918, 2129, 3603
BpuMI CCSGG 1 cut(s) 990
Bsa29I ATCGAT 2 cut(s) 627, 1474
BsaAI YACGTR 5 cut(s) 67, 3282, 3305, 3332, 3833
BsaBI GATNNNNATC 1 cut(s) 936
BsaHI GRCGYC 2 cut(s) 351, 3225
BsaI GGTCTC 1 cut(s) 3361
BsaJI CCNNGG 8 cut(s) 129, 1713, 2421, 2751, 2824, 2864, 3101, 3102
BsaXI ACNNNNNCTCC 2 cut(s) 2660, 2690
Bsc4I CCNNNNNNNGG 7 cut(s) 369, 1136, 1528, 2662, 2825, 3107, 3412
Bse1I ACTGG 3 cut(s) 207, 2205, 2255
Bse21I CCTNAGG 1 cut(s) 3818
Bse3DI GCAATG 3 cut(s) 705, 3172, 3686
Bse8I GATNNNNATC 1 cut(s) 936
BseBI CCWGG 7 cut(s) 406, 634, 2825, 2865, 2880, 3103, 3198
BseCI ATCGAT 2 cut(s) 627, 1474
BseDI CCNNGG 8 cut(s) 129, 1713, 2421, 2751, 2824, 2864, 3101, 3102
BseJI GATNNNNATC 1 cut(s) 936
BseLI CCNNNNNNNGG 7 cut(s) 369, 1136, 1528, 2662, 2825, 3107, 3412
BseMI GCAATG 3 cut(s) 705, 3172, 3686
BseMII CTCAG 8 cut(s) 359, 434, 1041, 1312, 1563, 1768, 3561, 3832
BseNI ACTGG 3 cut(s) 207, 2205, 2255
BseRI GAGGAG 2 cut(s) 1574, 3330
BseXI GCAGC 4 cut(s) 32, 2664, 3539, 3634
BseYI CCCAGC 1 cut(s) 363
Bsh1236I CGCG 1 cut(s) 260
BshFI GGCC 1 cut(s) 2302
BshNI GGYRCC 3 cut(s) 273, 408, 1628
BshVI ATCGAT 2 cut(s) 627, 1474
BsiHKAI GWGCWC 2 cut(s) 174, 421
BsiHKCI CYCGRG 3 cut(s) 173, 299, 612
BsiSI CCGG 4 cut(s) 197, 217, 989, 1565
BslFI GGGAC 5 cut(s) 2759, 2802, 2841, 2926, 3428
BslI CCNNNNNNNGG 7 cut(s) 369, 1136, 1528, 2662, 2825, 3107, 3412
BsmAI GTCTC 3 cut(s) 1894, 2817, 3361
BsmFI GGGAC 5 cut(s) 2759, 2802, 2841, 2926, 3428
BsmI GAATGC 1 cut(s) 3017
BsnI GGCC 1 cut(s) 2302
Bso31I GGTCTC 1 cut(s) 3361
BsoBI CYCGRG 3 cut(s) 173, 299, 612
Bsp119I TTCGAA 2 cut(s) 1707, 2180
Bsp1286I GDGCHC 2 cut(s) 174, 421
Bsp1407I TGTACA 1 cut(s) 1762
BspACI CCGC 9 cut(s) 452, 565, 959, 1644, 2367, 2511, 2650, 2666, 3083
BspANI GGCC 1 cut(s) 2302
BspCNI CTCAG 8 cut(s) 360, 433, 1042, 1311, 1562, 1767, 3560, 3831
BspDI ATCGAT 2 cut(s) 627, 1474
BspFNI CGCG 1 cut(s) 260
BspHI TCATGA 5 cut(s) 1143, 1287, 1330, 1963, 3427
BspLI GGNNCC 7 cut(s) 275, 410, 1563, 1630, 2877, 2914, 3291
BspMAI CTGCAG 2 cut(s) 1672, 3504
BspQI GCTCTTC 2 cut(s) 12, 1200
BspT104I TTCGAA 2 cut(s) 1707, 2180
BspT107I GGYRCC 3 cut(s) 273, 408, 1628
BspTI CTTAAG 1 cut(s) 577
BspTNI GGTCTC 1 cut(s) 3361
BsrDI GCAATG 3 cut(s) 705, 3172, 3686
BsrGI TGTACA 1 cut(s) 1762
BsrI ACTGG 3 cut(s) 207, 2205, 2255
BssECI CCNNGG 8 cut(s) 129, 1713, 2421, 2751, 2824, 2864, 3101, 3102
BssNI GRCGYC 2 cut(s) 351, 3225
BssT1I CCWWGG 2 cut(s) 129, 2421
Bst2UI CCWGG 7 cut(s) 406, 634, 2825, 2865, 2880, 3103, 3198
Bst4CI ACNGT 5 cut(s) 1175, 1237, 1426, 2442, 3442
Bst6I CTCTTC 9 cut(s) 12, 902, 1103, 1152, 1200, 3453, 3459, 3465, 3471
BstACI GRCGYC 2 cut(s) 351, 3225
BstAFI CTTAAG 1 cut(s) 577
BstAPI GCANNNNNTGC 1 cut(s) 467
BstAUI TGTACA 1 cut(s) 1762
BstBAI YACGTR 5 cut(s) 67, 3282, 3305, 3332, 3833
BstBI TTCGAA 2 cut(s) 1707, 2180
BstC8I GCNNGC 6 cut(s) 481, 1020, 1110, 2304, 2369, 3788
BstDSI CCRYGG 1 cut(s) 2751
BstEII GGTNACC 1 cut(s) 2408
BstENI CCTNNNNNAGG 1 cut(s) 2660
BstFNI CGCG 1 cut(s) 260
BstHHI GCGC 3 cut(s) 306, 2373, 2736
BstMAI GTCTC 3 cut(s) 1894, 2817, 3361
BstMWI GCNNNNNNNGC 9 cut(s) 373, 438, 458, 467, 476, 1570, 2488, 2941, 2987
BstNI CCWGG 7 cut(s) 406, 634, 2825, 2865, 2880, 3103, 3198
BstNSI RCATGY 4 cut(s) 1046, 1112, 2561, 3790
BstPI GGTNACC 1 cut(s) 2408
BstSCI CCNGG 8 cut(s) 404, 632, 988, 2823, 2863, 2878, 3101, 3196
BstSFI CTRYAG 4 cut(s) 1668, 2438, 2926, 3500
BstUI CGCG 1 cut(s) 260
BstV1I GCAGC 4 cut(s) 32, 2664, 3539, 3634
BstV2I GAAGAC 8 cut(s) 96, 192, 255, 334, 417, 1696, 2187, 3120
BstX2I RGATCY 3 cut(s) 1941, 3289, 3614
BstYI RGATCY 3 cut(s) 1941, 3289, 3614
Bsu15I ATCGAT 2 cut(s) 627, 1474
Bsu36I CCTNAGG 1 cut(s) 3818
BsuRI GGCC 1 cut(s) 2302
BsuTUI ATCGAT 2 cut(s) 627, 1474
BtgI CCRYGG 1 cut(s) 2751
BtrI CACGTC 1 cut(s) 2773
BtsI GCAGTG 1 cut(s) 2939
BtsIMutI CAGTG 8 cut(s) 691, 1171, 1422, 2198, 2262, 2939, 3189, 3447
Cac8I GCNNGC 6 cut(s) 481, 1020, 1110, 2304, 2369, 3788
CciI TCATGA 5 cut(s) 1143, 1287, 1330, 1963, 3427
CfoI GCGC 3 cut(s) 306, 2373, 2736
Cfr13I GGNCC 3 cut(s) 112, 2328, 2913
ClaI ATCGAT 2 cut(s) 627, 1474
CseI GACGC 3 cut(s) 249, 3214, 3454
CsiI ACCWGGT 1 cut(s) 3196
Csp6I GTAC 8 cut(s) 665, 671, 803, 1248, 1629, 1763, 2267, 3091
CviQI GTAC 8 cut(s) 665, 671, 803, 1248, 1629, 1763, 2267, 3091
DraI TTTAAA 1 cut(s) 28
DriI GACNNNNNGTC 1 cut(s) 2809
Eam1104I CTCTTC 9 cut(s) 12, 902, 1103, 1152, 1200, 3453, 3459, 3465, 3471
Eam1105I GACNNNNNGTC 1 cut(s) 2809
EarI CTCTTC 9 cut(s) 12, 902, 1103, 1152, 1200, 3453, 3459, 3465, 3471
EciI GGCGGA 1 cut(s) 2681
Ecl136II GAGCTC 1 cut(s) 172
Eco130I CCWWGG 2 cut(s) 129, 2421
Eco24I GRGCYC 1 cut(s) 174
Eco31I GGTCTC 1 cut(s) 3361
Eco47I GGWCC 3 cut(s) 112, 2328, 2913
Eco53kI GAGCTC 1 cut(s) 172
Eco57I CTGAAG 4 cut(s) 1084, 2433, 3165, 3402
Eco72I CACGTG 4 cut(s) 67, 3282, 3305, 3332
Eco81I CCTNAGG 1 cut(s) 3818
Eco88I CYCGRG 3 cut(s) 173, 299, 612
Eco91I GGTNACC 1 cut(s) 2408
EcoICRI GAGCTC 1 cut(s) 172
EcoNI CCTNNNNNAGG 1 cut(s) 2660
EcoO109I RGGNCCY 1 cut(s) 2913
EcoO65I GGTNACC 1 cut(s) 2408
EcoRI GAATTC 4 cut(s) 603, 1434, 1687, 1834
EcoRII CCWGG 7 cut(s) 404, 632, 2823, 2863, 2878, 3101, 3196
EcoT14I CCWWGG 2 cut(s) 129, 2421
EcoT22I ATGCAT 3 cut(s) 1512, 1887, 3019
EcoT38I GRGCYC 1 cut(s) 174
ErhI CCWWGG 2 cut(s) 129, 2421
FaqI GGGAC 5 cut(s) 2759, 2802, 2841, 2926, 3428
FauI CCCGC 4 cut(s) 558, 2360, 2504, 3090
FauNDI CATATG 2 cut(s) 2599, 2785
FbaI TGATCA 3 cut(s) 291, 2715, 3424
FblI GTMKAC 1 cut(s) 1449
Fnu4HI GCNGC 5 cut(s) 21, 453, 2653, 3528, 3648
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 5 cut(s) 21, 453, 2653, 3528, 3648
FspBI CTAG 4 cut(s) 1014, 2072, 2657, 2684
FspI TGCGCA 1 cut(s) 2735
GlaI GCGC 3 cut(s) 305, 2372, 2735
GluI GCNGC 5 cut(s) 21, 453, 2653, 3528, 3648
GsaI CCCAGC 1 cut(s) 367
GsuI CTGGAG 2 cut(s) 224, 3385
HaeIII GGCC 1 cut(s) 2302
HapII CCGG 4 cut(s) 197, 217, 989, 1565
HgaI GACGC 3 cut(s) 249, 3214, 3454
HhaI GCGC 3 cut(s) 306, 2373, 2736
Hin1I GRCGYC 2 cut(s) 351, 3225
Hin6I GCGC 3 cut(s) 304, 2371, 2734
HinP1I GCGC 3 cut(s) 304, 2371, 2734
HincII GTYRAC 1 cut(s) 1450
HindII GTYRAC 1 cut(s) 1450
HindIII AAGCTT 4 cut(s) 2078, 2489, 3735, 3743
HpaII CCGG 4 cut(s) 197, 217, 989, 1565
HphI GGTGA 2 cut(s) 3161, 3369
Hpy166II GTNNAC 6 cut(s) 1450, 2086, 2445, 3091, 3285, 3830
Hpy8I GTNNAC 6 cut(s) 1450, 2086, 2445, 3091, 3285, 3830
Hpy99I CGWCG 3 cut(s) 353, 356, 1451
HpyAV CCTTC 9 cut(s) 545, 740, 1937, 2092, 2946, 3140, 3208, 3338, 3604
HpyCH4III ACNGT 5 cut(s) 1175, 1237, 1426, 2442, 3442
HpyF10VI GCNNNNNNNGC 9 cut(s) 373, 438, 458, 467, 476, 1570, 2488, 2941, 2987
Hsp92I GRCGYC 2 cut(s) 351, 3225
HspAI GCGC 3 cut(s) 304, 2371, 2734
KpnI GGTACC 1 cut(s) 1632
Ksp22I TGATCA 3 cut(s) 291, 2715, 3424
LguI GCTCTTC 2 cut(s) 12, 1200
LmnI GCTCC 2 cut(s) 1561, 1898
Lsp1109I GCAGC 4 cut(s) 32, 2664, 3539, 3634
MabI ACCWGGT 1 cut(s) 3196
MaeI CTAG 4 cut(s) 1014, 2072, 2657, 2684
MfeI CAATTG 2 cut(s) 950, 1766
MflI RGATCY 3 cut(s) 1941, 3289, 3614
MhlI GDGCHC 2 cut(s) 174, 421
MluI ACGCGT 1 cut(s) 258
MlyI GAGTC 7 cut(s) 524, 1307, 2201, 2530, 2819, 2823, 3070
MmeI TCCRAC 7 cut(s) 1351, 1411, 1817, 1839, 2015, 2706, 3123
Mph1103I ATGCAT 3 cut(s) 1512, 1887, 3019
MroXI GAANNNNTTC 6 cut(s) 628, 1542, 2391, 2794, 3746, 3809
MslI CAYNNNNRTG 6 cut(s) 414, 1476, 1682, 1962, 2765, 3756
MspA1I CMGCKG 2 cut(s) 367, 3647
MspCI CTTAAG 1 cut(s) 577
MspI CCGG 4 cut(s) 197, 217, 989, 1565
MspR9I CCNGG 8 cut(s) 406, 634, 990, 2825, 2865, 2880, 3103, 3198
MunI CAATTG 2 cut(s) 950, 1766
Mva1269I GAATGC 1 cut(s) 3017
MvaI CCWGG 7 cut(s) 406, 634, 2825, 2865, 2880, 3103, 3198
MvnI CGCG 1 cut(s) 260
MwoI GCNNNNNNNGC 9 cut(s) 373, 438, 458, 467, 476, 1570, 2488, 2941, 2987
NciI CCSGG 1 cut(s) 990
NdeI CATATG 2 cut(s) 2599, 2785
NlaIV GGNNCC 7 cut(s) 275, 410, 1563, 1630, 2877, 2914, 3291
NmuCI GTSAC 8 cut(s) 158, 222, 568, 1462, 1523, 2566, 2642, 3442
NsbI TGCGCA 1 cut(s) 2735
NsiI ATGCAT 3 cut(s) 1512, 1887, 3019
NspI RCATGY 4 cut(s) 1046, 1112, 2561, 3790
NspV TTCGAA 2 cut(s) 1707, 2180
OliI CACNNNNGTG 1 cut(s) 414
PaeI GCATGC 2 cut(s) 1112, 3790
PaeR7I CTCGAG 3 cut(s) 173, 299, 612
PagI TCATGA 5 cut(s) 1143, 1287, 1330, 1963, 3427
PasI CCCWGGG 1 cut(s) 3102
PciSI GCTCTTC 2 cut(s) 12, 1200
PcsI WCGNNNNNNNCGW 3 cut(s) 171, 707, 3405
PctI GAATGC 1 cut(s) 3017
PdmI GAANNNNTTC 6 cut(s) 628, 1542, 2391, 2794, 3746, 3809
PflFI GACNNNGTC 1 cut(s) 1517
PfoI TCCNGGA 1 cut(s) 988
PkrI GCNGC 5 cut(s) 22, 454, 2654, 3529, 3649
PleI GAGTC 7 cut(s) 523, 1307, 2200, 2529, 2818, 2823, 3069
PmaCI CACGTG 4 cut(s) 67, 3282, 3305, 3332
PmlI CACGTG 4 cut(s) 67, 3282, 3305, 3332
PpsI GAGTC 7 cut(s) 523, 1307, 2200, 2529, 2818, 2823, 3069
Ppu21I YACGTR 5 cut(s) 67, 3282, 3305, 3332, 3833
PpuMI RGGWCCY 1 cut(s) 2913
PsiI TTATAA 2 cut(s) 723, 3078
Psp124BI GAGCTC 1 cut(s) 174
Psp1406I AACGTT 2 cut(s) 52, 152
Psp5II RGGWCCY 1 cut(s) 2913
Psp6I CCWGG 7 cut(s) 404, 632, 2823, 2863, 2878, 3101, 3196
PspCI CACGTG 4 cut(s) 67, 3282, 3305, 3332
PspEI GGTNACC 1 cut(s) 2408
PspFI CCCAGC 1 cut(s) 363
PspGI CCWGG 7 cut(s) 404, 632, 2823, 2863, 2878, 3101, 3196
PspN4I GGNNCC 7 cut(s) 275, 410, 1563, 1630, 2877, 2914, 3291
PspPI GGNCC 3 cut(s) 112, 2328, 2913
PspPPI RGGWCCY 1 cut(s) 2913
PspXI VCTCGAGB 1 cut(s) 299
PstI CTGCAG 2 cut(s) 1672, 3504
PsuI RGATCY 3 cut(s) 1941, 3289, 3614
PsyI GACNNNGTC 1 cut(s) 1517
PvuII CAGCTG 2 cut(s) 367, 3647
RsaI GTAC 8 cut(s) 666, 672, 804, 1249, 1630, 1764, 2268, 3092
RsaNI GTAC 8 cut(s) 665, 671, 803, 1248, 1629, 1763, 2267, 3091
RseI CAYNNNNRTG 6 cut(s) 414, 1476, 1682, 1962, 2765, 3756
SacI GAGCTC 1 cut(s) 174
SalI GTCGAC 1 cut(s) 1448
SapI GCTCTTC 2 cut(s) 12, 1200
SatI GCNGC 5 cut(s) 21, 453, 2653, 3528, 3648
Sau96I GGNCC 3 cut(s) 112, 2328, 2913
ScaI AGTACT 1 cut(s) 2268
SchI GAGTC 7 cut(s) 524, 1307, 2201, 2530, 2819, 2823, 3070
ScrFI CCNGG 8 cut(s) 406, 634, 990, 2825, 2865, 2880, 3103, 3198
SduI GDGCHC 2 cut(s) 174, 421
SexAI ACCWGGT 1 cut(s) 3196
SfcI CTRYAG 4 cut(s) 1668, 2438, 2926, 3500
Sfr274I CTCGAG 3 cut(s) 173, 299, 612
SfuI TTCGAA 2 cut(s) 1707, 2180
SinI GGWCC 3 cut(s) 112, 2328, 2913
SlaI CTCGAG 3 cut(s) 173, 299, 612
SmiMI CAYNNNNRTG 6 cut(s) 414, 1476, 1682, 1962, 2765, 3756
SmlI CTYRAG 8 cut(s) 73, 173, 299, 577, 612, 1897, 2144, 3618
SmoI CTYRAG 8 cut(s) 73, 173, 299, 577, 612, 1897, 2144, 3618
SphI GCATGC 2 cut(s) 1112, 3790
SsiI CCGC 9 cut(s) 452, 565, 959, 1644, 2367, 2511, 2650, 2666, 3083
SspI AATATT 2 cut(s) 1493, 3259
SspMI CTAG 4 cut(s) 1014, 2072, 2657, 2684
SstI GAGCTC 1 cut(s) 174
StyD4I CCNGG 8 cut(s) 404, 632, 988, 2823, 2863, 2878, 3101, 3196
StyI CCWWGG 2 cut(s) 129, 2421
TaaI ACNGT 5 cut(s) 1175, 1237, 1426, 2442, 3442
TatI WGTACW 3 cut(s) 670, 1762, 2266
TauI GCSGC 1 cut(s) 455
TscAI CASTG 8 cut(s) 691, 1178, 1429, 2205, 2262, 2946, 3189, 3447
TseFI GTSAC 8 cut(s) 158, 222, 568, 1462, 1523, 2566, 2642, 3442
TseI GCWGC 4 cut(s) 20, 2652, 3527, 3647
Tsp45I GTSAC 8 cut(s) 158, 222, 568, 1462, 1523, 2566, 2642, 3442
TspGWI ACGGA 5 cut(s) 125, 146, 1511, 1845, 3302
TspRI CASTG 8 cut(s) 691, 1178, 1429, 2205, 2262, 2946, 3189, 3447
Tth111I GACNNNGTC 1 cut(s) 1517
Vha464I CTTAAG 1 cut(s) 577
VpaK11BI GGWCC 3 cut(s) 112, 2328, 2913
XagI CCTNNNNNAGG 1 cut(s) 2660
XapI RAATTY 8 cut(s) 603, 1434, 1687, 1787, 1823, 1834, 2250, 3690
XceI RCATGY 4 cut(s) 1046, 1112, 2561, 3790
XhoI CTCGAG 3 cut(s) 173, 299, 612
XmiI GTMKAC 1 cut(s) 1449
XmnI GAANNNNTTC 6 cut(s) 628, 1542, 2391, 2794, 3746, 3809
XspI CTAG 4 cut(s) 1014, 2072, 2657, 2684
ZraI GACGTC 1 cut(s) 352
ZrmI AGTACT 1 cut(s) 2268
Zsp2I ATGCAT 3 cut(s) 1512, 1887, 3019
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.