FvH4_2g17330

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000036
Physical Location & Seq
Forward (+)
14959912 .. 14964493
4582 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g17330.t1

Sequence Viewer

Length: 3609 bp
ATGGCTCTTGCACTTGTAACAACCACCTCCCCAAATACTCGTCCATCTGGTTATCATGTGTTCTTGAGTTTCAGGGGTGAAGAAACCCGCAAGACTTTTACGGACCACCTCTACACAGCCTTCATCAGTTCAGGCTTTCGTACGTTTCGAGACGAAGATGAACTTCCAAAGGGACAAGACATCAAGCCAGAAATTCGGAAAGCCATCGAGCTGTCACGAAGCTCTGTTATTGTGTTTTCAAAAGACTATGCGTCTTCCCAGTGGTGCCTTGACGAGCTTGTGATGATCATGGAACGCAAGAGGACCGCCGATCACATAGTTTTACCTGTCTTCTACGATGTCGATCCATCGCAAGTGAGGAAGCAGACAGGAGATCTTGCAAAAGCACTTGCTAGACACGAAAGAATCCAATCCTTGAAGAGCAAGGTGAAGCGATGGAGGGAAGCACTTGCAGAAGTTGCCGATCTAGCAGGAATGGTCTTGCAAAATGAAGCTGACGGGCACGAGTCTAAGTTTATCGAGAAAATTGTAAGGGTAATGGAAGATAAACTTAGGCGCATTCCCTTAAGTGTTGAACCGCACCTAATTGGGATAGATTCTCAAACCAGAGACATCAATTTATGGTTAAGAGATGGATCAGCTGATGTTGACATACTTTTACTTCATGGAATGCGTGGAATAGGAAAATCAACCATAGCGAAATTTGTTTATAACTCAAACTTCCAAAGATTTGAGAGATGCAGTTACCTTGAAAATATCAGAGAAGCTGCAGAACAACCGAATGGCTTGCTTCGGCTACAAAAACAACTTCTTAATGATATTTTGAGCGGAAGTAAAGTGAAAATACACAATATTAGTGAAGGGATAGCTAAGATTGAAGATGCCATTAGCTCAAGAAGAGTTTTTCTTGTTCTTGATGATGTGGATCATGTGGACCAACTTGCTGCATTACTGAGAATGAAAAATCGGTTTCATCCAGGAAGTAAGATCATCATAACAAGTAGCTGCGCCGGATTGTTGGAAGCTCACTGCCAATTTGCTAAGGTGCATATGGTTAGGATTCTGGATGAGGATGAAGCATTAGCGCTCTTTAGTTGGCATGCTTTTGGACAGGACCATCCCATTGAAGGTTATACTGATCATTCGAAAAGGGTAATAGATCATTGTGGACGACTTCCACTAGCACTTAAAGTTTTAGGTGCTTCTTTATCAGGAAAGAATCTTGTTGTCTGGGAAAGCGCATTGAACAAACTGGAAGTTATTCCAAATGGTGAAATAATGAAGAAACTCAAAATAAGCTATGAATCGATACAAGATGATCATGACAAAGCTTTATTCCTTCATATTGCATGCTTCTTTATTGGAATGGAGAAAGCTGTCGTTCTCACCATACTGGATGCTTGTGATTTCTTCACAGAGGTTGGCATTGAAAATATCATTGATAGATGTTTAGTAACTATTGACAAAGATTCTAAGTCGGTGCAAATGCATGACATGATTCGTGACATGGGAAGGGAAATTGTCCGCCTAGAATCAAAGGAGCCAGAAAAACGTACTAGGGTTTGGCATCATATGGATTCGTTTCAAGTATTGTCCCAAAATATTGGCACCCAGACAATTGAAGGACTTGTTCTCAACATGCAAATGCACCCTGCTTCGAGAAATTCAAGTAAGGTAGTAATGGAAACCAATGCGTTTACAAGGATGCACAATCTAAGACTCCTCCAGCTCAGTGATGTGCAGCTCAGTGGACGCTACGGTGAATTACCTGCAGGACTAAGATGGTTTTCTTGGAGTAAATTTCCTTTAGCTTCCTTACCCTCTGATTTTCCGTTGGAGAGACTTGTTGCTCTTGAAATGTGTTATAGCAGTTTGAGACAACTTTGGAGGGGAATAAAGTATCTCCCATCACTTAAAATATTAAATCTCAGCCACTCTCATGAGTTTACTGAAATCCCTGATTTTTCCTGTATCCCTAATCTAGACAGACTCATTCTTGAAGATTGTACAAGATTGATAAATGTCCATGAAAACATTGGACTCCTGGAGAGGCTTACTTATTTGAGTGTGAAAGATTGCAAAAATCTTAGGAACATTCCAGAGAACATTTCTATCCTACCCTTCCTTGAAACACTCATTATCTCTGGTTGTTCAAATCTTGGAGAGTTTCCGACAGAAATGATGAGGATTCAGTCGTTGAAAGTGTTTCAAGCAGACGGAGTTCCAATACATCGACTACTAGTCACTACCAGTTGCTCAAGTCCGATTCCAGTAATTTCTTGGGCATCTTATCTTCCGAAGAATTTAGTAAACTTGAGTCTAAGAAACTGTAATCTTTCGGATGACGATTTTCCAAGGGATGTTGCTAATCTGTTCTCATTGCAATCATTGGATCTCAGTGGGAACCCAATTTCTAGGCTACCGGATTGCATCAGAGATCTTACTGACCTCCAATATCTCTTTTTGGACTCTTGTAAGAAGCTCAAATCACTTCTAAGGCTACCAACAGGATTAGTTGAATTGCGTATGGCGTGGTGCACGTCGTTGGAAAAGGTAACATATCAATCTTGTAAGCACAAACTAATGCGCTATTCATGGAGTTCGATGCCTATTGTTGAGTTTCTAGGTCGTTTCAAGTTGGAACCCATCGAAAGAGTTGATAAAAAAATGCTTAAACTTTTGAGCTTAGAAAAACTGGAATCCCTGGAAAACATCTTGATGGACACATCACTCACACCATATGATAAAACCTTTGTATGGAACGGAATGCGTCATGTCCAGGGACTCTATGAAGACGGTATATTCAGCACATTCCTTCCTGGAGACCAAGTTCCAGGCCAGTTCAGCCATAGAAGCAGAGGCTCCTCTATATCCTTCACTGTGCCTTCACTTTCCAATCTTAATATACGAGGACTAAATATCTTCTCGGTTGTAACAAAATCCAACCACAACGATTCTGATCTTATAACCAATGTTGTCAACATTGATGGTTCAGTATATCTGGCAATTACTGTTGTGAGTAATAACAGTAGCGGTCTGAAATGGGTTTATGGTCCAACATATTTTGGCGTTCCCCGAGAGGGAAAAGATGTGATCTGGTTAAGTCACTGGAGGTTTGGGAATCGACTTAAAGGCGGTGATGAGATGACTATTCTAATATATACAAAATCTGATTTCAAGGTCAAGGAGTGTGGCATCCAGCTTGTTTACTACGACGACAAAGATCCAGAAGAGATAACTAGTACCGAACTTATTGTGGCTGCCAACTTGGACGATCCTTGTTTTCTTCGAGCAGGAGTTTCGCCAACAATAGGCTTTTACCCTTTGGATGGAATAACCTTTCAATGCGACCATACAGGAATTGAAGGAAATATCGATCTCATTAGGGACATCAATGAAAAATCAGAGAAAAAACAAGGGGCAGAGGGTGACCTGATCCTCAAGCATGCAGCACAGAGTGGCAGTAATAGCAATAGCAACAAACGAGGTTTCTTCATAGGTTGGAAGGGGATCATGATGGCCACTGTCTTCCTTCTTTCTCTTCCCCTCGTTGCTCGTTCTGCTCTCTTCCAGCATCGAAAGAAACAACAGTCCACAAGCCCTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

1203

Amino Acids

136.27

Weight (kDa)

6.94

Isoelectric Point (pI)

46.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 18 - 190 2.1e-50 TIR domain
TIR_2 PF13676 20 - 127 2.7e-15 TIR domain
NB-ARC PF00931 205 - 370 4.7e-16 NB-ARC domain
AAA_14 PF13173 218 - 342 5.7e-06 AAA domain
WHD_ROQ1 PF23282 440 - 511 6.9e-18 Disease resistance protein Roq1-like, winged-helix domain
LRR_14 PF23598 647 - 739 1.7e-06 Leucine-rich repeat region
LRR_14 PF23598 772 - 932 4.3e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57630 AT1G72930 AT5G38344
fragaria_vesca FvH4_1g27020 FvH4_2g00931 FvH4_2g17330 FvH4_2g17330 FvH4_2g17340 FvH4_2g17350 FvH4_2g20690 FvH4_5g15301 FvH4_5g34194 FvH4_5g38530 FvH4_5g38740 FvH4_5g38740 FvH4_5g38740 FvH4_6g03800 FvH4_7g09791 FvH4_7g09800 FvH4_7g09800 FvH4_7g10510 FvH4_7g10520 FvH4_7g10520 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750
malus_domestica MD02G1217100.v1.1 MD02G1217200.v1.1 MD02G1217400.v1.1 MD02G1217600.v1.1 MD02G1264800.v1.1 MD02G1264900.v1.1 MD02G1302100.v1.1 MD04G1010700.v1.1 MD05G1006800.v1.1 MD05G1140100.v1.1 MD05G1140200.v1.1 MD05G1152200.v1.1 MD07G1073500.v1.1 MD07G1101700.v1.1 MD07G1102200.v1.1 MD07G1103200.v1.1 MD07G1112300.v1.1 MD08G1018200.v1.1 MD08G1018400.v1.1 MD08G1018800.v1.1 MD08G1019000.v1.1 MD08G1019100.v1.1 MD08G1019200.v1.1 MD08G1019300.v1.1 MD08G1019400.v1.1 MD08G1019600.v1.1 MD08G1019900.v1.1 MD08G1020000.v1.1 MD08G1020200.v1.1 MD08G1020500.v1.1 MD08G1020700.v1.1 MD08G1020800.v1.1 MD08G1040700.v1.1 MD11G1112400.v1.1 MD12G1068600.v1.1 MD12G1193200.v1.1 MD13G1050600.v1.1 MD15G1374900.v1.1 MD15G1375100.v1.1 MD15G1416500.v1.1 MD17G1072500.v1.1 MD17G1274200.v1.1 MD17G1274900.v1.1
prunus_persica Prupe.2G121000_v2.0.a1 Prupe.2G121000_v2.0.a1 Prupe.2G125800_v2.0.a1 Prupe.2G126000_v2.0.a1 Prupe.2G126100_v2.0.a1 Prupe.2G126200_v2.0.a1 Prupe.2G126300_v2.0.a1 Prupe.2G126400_v2.0.a1 Prupe.2G126500_v2.0.a1 Prupe.2G126600_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126800_v2.0.a1 Prupe.2G126900_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G135500_v2.0.a1 Prupe.2G135600_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.3G009800_v2.0.a1 Prupe.3G010200_v2.0.a1 Prupe.3G131000_v2.0.a1 Prupe.4G260800_v2.0.a1 Prupe.4G260900_v2.0.a1 Prupe.6G083100_v2.0.a1 Prupe.6G083200_v2.0.a1 Prupe.6G083400_v2.0.a1 Prupe.6G132100_v2.0.a1 Prupe.8G184900_v2.0.a1 Prupe.8G185200_v2.0.a1 Prupe.8G185300_v2.0.a1
pyrus_communis pycom02g17870 pycom02g17880 pycom02g19520 pycom02g22610 pycom02g22630 pycom02g22680 pycom05g13540 pycom05g14680 pycom07g04880 pycom07g04890 pycom07g05690 pycom07g05710 pycom07g05720 pycom07g05750 pycom07g05780 pycom07g06300 pycom07g08320 pycom07g08330 pycom07g08350 pycom07g08360 pycom07g08370 pycom07g08410 pycom07g08420 pycom07g08430 pycom07g08440 pycom07g08470 pycom07g08480 pycom07g08520 pycom07g08550 pycom07g08560 pycom07g08640 pycom07g08660 pycom07g08670 pycom07g08680 pycom07g08690 pycom07g08720 pycom07g08730 pycom07g08790 pycom07g08800 pycom07g08810 pycom07g08860 pycom07g08890 pycom07g09720 pycom08g01590 pycom08g01600 pycom08g01620 pycom08g01630 pycom08g01640 pycom10g12630 pycom15g16490 pycom17g07200 pycom17g07210 pycom17g07220 pycom17g11730 pycom17g11740 pycom17g27340 pycom17g27380
rosa_chinensis RchiOBHm_Chr1g0342571 RchiOBHm_Chr1g0346231 RchiOBHm_Chr1g0346831 RchiOBHm_Chr1g0346891 RchiOBHm_Chr1g0348311 RchiOBHm_Chr1g0348321 RchiOBHm_Chr1g0348331 RchiOBHm_Chr1g0348361 RchiOBHm_Chr1g0348371 RchiOBHm_Chr1g0348381 RchiOBHm_Chr1g0348401 RchiOBHm_Chr1g0348411 RchiOBHm_Chr1g0348421 RchiOBHm_Chr1g0348431 RchiOBHm_Chr2g0130881 RchiOBHm_Chr3g0487331 RchiOBHm_Chr5g0060371 RchiOBHm_Chr6g0246491 RchiOBHm_Chr6g0246871 RchiOBHm_Chr6g0250311 RchiOBHm_Chr6g0250781 RchiOBHm_Chr6g0251431 RchiOBHm_Chr6g0281871 RchiOBHm_Chr6g0281881 RchiOBHm_Chr6g0281931 RchiOBHm_Chr6g0281941 RchiOBHm_Chr6g0281951 RchiOBHm_Chr6g0281971 RchiOBHm_Chr6g0281981 RchiOBHm_Chr7g0240541 RchiOBHm_Chr7g0240631 RchiOBHm_Chr7g0240671
rosa_laevigata RLG00000000627 RLG00000000631 RLG00000000641 RLG00000000645 RLG00000000652 RLG00000000662 RLG00000000663 RLG00000000667 RLG00000000670 RLG00000000702 RLG00000001216 RLG00000001219 RLG00000007678 RLG00000012923 RLG00000012996 RLG00000013243 RLG00000017513 RLG00000017514 RLG00000020936 RLG00000022755 RLG00000023013 RLG00000028646 RLG00000028654 RLG00000028662 RLG00000028665 RLG00000028667 RLG00000028711 RLG00000028714 RLG00000028716 RLG00000028770 RLG00000028771 RLG00000028773 RLG00000028778 RLG00000028798 RLG00000028809 RLG00000028813 RLG00000029334 RLG00000030003 RLG00000033910 RLG00000034358 RLG00000035430
rosa_multiflora Rmu_co8031134.1_g000001 Rmu_co8092796.1_g000001 Rmu_co8130156.1_g000001 Rmu_co8325323.1_g000001 Rmu_co8424083.1_g000002 Rmu_sc0000008.1_g000003 Rmu_sc0000008.1_g000011 Rmu_sc0000008.1_g000015 Rmu_sc0000008.1_g000020 Rmu_sc0000091.1_g000015 Rmu_sc0000091.1_g000018 Rmu_sc0000091.1_g000029 Rmu_sc0000091.1_g000031 Rmu_sc0000391.1_g000004 Rmu_sc0001070.1_g000030 Rmu_sc0001293.1_g000016 Rmu_sc0001674.1_g000006 Rmu_sc0001731.1_g000002 Rmu_sc0001731.1_g000003 Rmu_sc0001731.1_g000005 Rmu_sc0001911.1_g000029 Rmu_sc0001913.1_g000038 Rmu_sc0001955.1_g000025 Rmu_sc0001992.1_g000022 Rmu_sc0001992.1_g000028 Rmu_sc0001992.1_g000031 Rmu_sc0002517.1_g000013 Rmu_sc0002517.1_g000017 Rmu_sc0002551.1_g000022 Rmu_sc0002551.1_g000029 Rmu_sc0002551.1_g000038 Rmu_sc0002705.1_g000015 Rmu_sc0002705.1_g000016 Rmu_sc0002882.1_g000055 Rmu_sc0003232.1_g000027 Rmu_sc0003363.1_g000037 Rmu_sc0003600.1_g000054 Rmu_sc0003918.1_g000011 Rmu_sc0004395.1_g000011 Rmu_sc0005071.1_g000004 Rmu_sc0005255.1_g000018 Rmu_sc0005327.1_g000004 Rmu_sc0005597.1_g000007 Rmu_sc0007060.1_g000007 Rmu_sc0007310.1_g000003 Rmu_sc0007383.1_g000014 Rmu_sc0007799.1_g000003 Rmu_sc0008477.1_g000016 Rmu_sc0010151.1_g000009 Rmu_sc0011217.1_g000005 Rmu_sc0016269.1_g000006 Rmu_sc0021495.1_g000001 Rmu_sc0027364.1_g000001 Rmu_sc0029432.1_g000001 Rmu_sc0041386.1_g000001 Rmu_ssc0000126.1_g000023 Rmu_ssc0000126.1_g000027
rosa_roxburghii Rroxscaffold_1G00006130 Rroxscaffold_1G00023320 Rroxscaffold_1G00038770 Rroxscaffold_2G00119800 Rroxscaffold_2G00121860 Rroxscaffold_3G00219780 Rroxscaffold_3G00219890 Rroxscaffold_4G00306740 Rroxscaffold_4G00306820 Rroxscaffold_4G00307000 Rroxscaffold_4G00307010 Rroxscaffold_4G00307020 Rroxscaffold_4G00308030 Rroxscaffold_4G00308070 Rroxscaffold_4G00308450 Rroxscaffold_4G00308460 Rroxscaffold_4G00315320 Rroxscaffold_5G00352470 Rroxscaffold_5G00371420 Rroxscaffold_6G00392300 Rroxscaffold_6G00394870 Rroxscaffold_6G00394890 Rroxscaffold_7G00186700 Rroxscaffold_7G00194980 Rroxscaffold_7G00216840
rosa_rugosa Rorug01G0076100 Rorug01G0128100 Rorug01G0149000.1 Rorug01G0149500.1 Rorug01G0180000 Rorug01G0180100 Rorug01G0182900 Rorug01G0184000 Rorug01G0184100 Rorug01G0184300 Rorug01G0184600 Rorug01G0184700 Rorug01G0184700 Rorug01G0184900 Rorug01G0185000 Rorug01G0185100 Rorug01G0189300 Rorug01G0194100 Rorug01G0194100 Rorug01G0194200 Rorug01G0194400 Rorug01G0194400 Rorug01G0194500 Rorug02G0090400 Rorug02G0090400 Rorug03G0233000 Rorug03G0233100 Rorug05G0178600 Rorug05G0178700 Rorug05G0579200 Rorug06G0144100 Rorug06G0144300 Rorug06G0144300 Rorug06G0179300 Rorug06G0208800 Rorug07G0323500 Rorug07G0337000
rosa_samantha Rh1AG046100 Rh1AG201400 Rh1AG201800 Rh1AG202100 Rh1AG202600 Rh1AG211500 Rh1AG211800 Rh1AG212200 Rh1AG212500 Rh1AG212600 Rh1AG214200 Rh1BG168000 Rh1BG168300 Rh1BG168500 Rh1BG177900 Rh1BG178200 Rh1BG178300 Rh1BG178800 Rh1BG178900 Rh1CG080900 Rh1CG183300 Rh1CG186300 Rh1CG186700 Rh1CG187000 Rh1CG187300 Rh1CG193400 Rh1CG195800 Rh1CG196000 Rh1CG196100 Rh1CG196400 Rh1CG196500 Rh1CG196800 Rh1CG198800 Rh1CG442600 Rh1DG086200 Rh1DG155400 Rh1DG156200 Rh1DG194000 Rh1DG194300 Rh1DG194900 Rh1DG197000 Rh1DG198800 Rh1DG199000 Rh1DG199200 Rh1DG202000 Rh1DG203900 Rh1DG207600 Rh1DG207900 Rh1DG208000 Rh1DG208500 Rh1DG208600 Rh1DG208700 Rh3CG339100 Rh5AG106500 Rh5AG264800 Rh5AG265300 Rh5CG302800 Rh5DG277900 Rh6AG257600 Rh6AG257700 Rh6BG260500 Rh6BG260700 Rh6CG259600 Rh6CG259700 Rh6DG252100 Rh7DG126900
rosa_wichuraiana Rw0G005780 Rw0G007540 Rw0G007550 Rw0G007560 Rw0G009390 Rw1G016900 Rw1G016930 Rw1G016940 Rw1G016970 Rw1G017860 Rw1G017890 Rw1G017900 Rw1G017910 Rw1G017920 Rw1G017960 Rw1G017970 Rw1G017980 Rw1G018150 Rw4G000830 Rw5G009290 Rw5G018950 Rw5G024850 Rw5G024870 Rw5G040460 Rw6G022290 Rw7G041020 Rw7G041200 Rw7G041360 Rw7G041450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 711, 2966
Acc36I ACCTGC 1 cut(s) 1777
AccB1I GGYRCC 2 cut(s) 264, 1607
AccBSI CCGCTC 1 cut(s) 828
AciI CCGC 7 cut(s) 88, 306, 578, 828, 1525, 3033, 3135
AclWI GGATC 8 cut(s) 338, 643, 933, 2400, 3218, 3269, 3430, 3518
AcoI YGGCCR 1 cut(s) 3519
AcsI RAATTY 5 cut(s) 192, 701, 1663, 1799, 2302
AdeI CACNNNGTG 1 cut(s) 3458
AfaI GTAC 4 cut(s) 142, 1555, 2008, 3244
AfeI AGCGCT 1 cut(s) 1086
AfiI CCNNNNNNNGG 5 cut(s) 1127, 2757, 3080, 3311, 3329
AflII CTTAAG 1 cut(s) 565
AhdI GACNNNNNGTC 2 cut(s) 250, 2240
AhlI ACTAGT 2 cut(s) 2239, 3239
AjiI CACGTC 1 cut(s) 2541
AjnI CCWGG 6 cut(s) 976, 2043, 2703, 2778, 2818, 2833
AloI GAACNNNNNNTCC 2 cut(s) 2814, 2846
Alw21I GWGCWC 1 cut(s) 2540
Alw26I GTCTC 5 cut(s) 144, 603, 1834, 1870, 2817
Alw44I GTGCAC 1 cut(s) 2536
AlwI GGATC 8 cut(s) 338, 643, 933, 2400, 3218, 3269, 3430, 3518
Ama87I CYCGRG 1 cut(s) 3075
Aor51HI AGCGCT 1 cut(s) 1086
AoxI GGCC 2 cut(s) 2836, 3519
ApaLI GTGCAC 1 cut(s) 2536
ApeKI GCWGC 6 cut(s) 767, 944, 1005, 1741, 3260, 3449
ApoI RAATTY 5 cut(s) 192, 701, 1663, 1799, 2302
Asp700I GAANNNNTTC 1 cut(s) 1260
AspLEI GCGC 5 cut(s) 558, 1010, 1087, 1241, 2589
AspS9I GGNCC 5 cut(s) 103, 303, 934, 1114, 3053
AsuHPI GGTGA 7 cut(s) 89, 439, 1283, 1378, 1772, 3149, 3440
AsuII TTCGAA 1 cut(s) 1145
AvaI CYCGRG 1 cut(s) 3075
AvaII GGWCC 5 cut(s) 103, 303, 934, 1114, 3053
BaeGI GKGCMC 2 cut(s) 504, 2540
BalI TGGCCA 1 cut(s) 3521
BanI GGYRCC 2 cut(s) 264, 1607
BauI CACGAG 1 cut(s) 503
BbsI GAAGAC 4 cut(s) 246, 322, 2799, 3520
Bbv12I GWGCWC 1 cut(s) 2540
BbvI GCAGC 6 cut(s) 754, 931, 992, 1753, 3247, 3461
BcgI CGANNNNNNTGC 4 cut(s) 769, 803, 3282, 3316
BciT130I CCWGG 6 cut(s) 978, 2045, 2705, 2780, 2820, 2835
BciVI GTATCC 1 cut(s) 1982
BclI TGATCA 3 cut(s) 285, 1138, 1318
BcoDI GTCTC 5 cut(s) 144, 603, 1834, 1870, 2817
BcuI ACTAGT 2 cut(s) 2239, 3239
BfmI CTRYAG 2 cut(s) 768, 1770
BfoI RGCGCY 1 cut(s) 1088
BfrI CTTAAG 1 cut(s) 565
BfuAI ACCTGC 1 cut(s) 1777
BfuI GTATCC 1 cut(s) 1982
BglII AGATCT 2 cut(s) 373, 2437
BisI GCNGC 6 cut(s) 768, 945, 1006, 1742, 3261, 3450
BlsI GCNGC 6 cut(s) 769, 946, 1007, 1743, 3262, 3451
Bme1390I CCNGG 6 cut(s) 978, 2045, 2705, 2780, 2820, 2835
Bme18I GGWCC 5 cut(s) 103, 303, 934, 1114, 3053
BmeRI GACNNNNNGTC 2 cut(s) 250, 2240
BmeT110I CYCGRG 1 cut(s) 3075
BmgBI CACGTC 1 cut(s) 2541
BmgT120I GGNCC 5 cut(s) 103, 303, 934, 1114, 3053
BmiI GGNNCC 6 cut(s) 266, 1542, 1609, 2405, 2643, 2863
BmrFI CCNGG 6 cut(s) 978, 2045, 2705, 2780, 2820, 2835
BmrI ACTGGG 1 cut(s) 253
BmuI ACTGGG 1 cut(s) 253
BpiI GAAGAC 4 cut(s) 246, 322, 2799, 3520
BpmI CTGGAG 4 cut(s) 1709, 2066, 2841, 3130
Bpu10I CCTNAGC 1 cut(s) 1041
Bpu14I TTCGAA 1 cut(s) 1145
BpuEI CTTGAG 5 cut(s) 85, 877, 2242, 2335, 3425
Bsa29I ATCGAT 2 cut(s) 1307, 3375
BsaBI GATNNNNATC 3 cut(s) 342, 924, 2958
BsaI GGTCTC 1 cut(s) 2817
BsaJI CCNNGG 3 cut(s) 2354, 2703, 2779
BsaWI WCCGGW 1 cut(s) 2422
BsaXI ACNNNNNCTCC 3 cut(s) 2814, 2844, 3586
Bsc4I CCNNNNNNNGG 5 cut(s) 1127, 2757, 3080, 3311, 3329
Bse1I ACTGG 8 cut(s) 259, 1257, 1398, 2250, 2270, 2700, 2839, 3113
Bse3DI GCAATG 1 cut(s) 2378
Bse8I GATNNNNATC 3 cut(s) 342, 924, 2958
BseBI CCWGG 6 cut(s) 978, 2045, 2705, 2780, 2820, 2835
BseCI ATCGAT 2 cut(s) 1307, 3375
BseDI CCNNGG 3 cut(s) 2354, 2703, 2779
BseJI GATNNNNATC 3 cut(s) 342, 924, 2958
BseLI CCNNNNNNNGG 5 cut(s) 1127, 2757, 3080, 3311, 3329
BseMI GCAATG 1 cut(s) 2378
BseMII CTCAG 5 cut(s) 944, 1744, 1759, 1942, 2410
BseNI ACTGG 8 cut(s) 259, 1257, 1398, 2250, 2270, 2700, 2839, 3113
BseRI GAGGAG 2 cut(s) 1712, 2854
BseSI GKGCMC 2 cut(s) 504, 2540
BseXI GCAGC 6 cut(s) 754, 931, 992, 1753, 3247, 3461
BsgI GTGCAG 1 cut(s) 1760
BshFI GGCC 2 cut(s) 2838, 3521
BshNI GGYRCC 2 cut(s) 264, 1607
BshVI ATCGAT 2 cut(s) 1307, 3375
BsiHKAI GWGCWC 1 cut(s) 2540
BsiHKCI CYCGRG 1 cut(s) 3075
BsiSI CCGG 2 cut(s) 1011, 2423
BsiWI CGTACG 1 cut(s) 140
BslFI GGGAC 4 cut(s) 186, 1579, 2796, 3401
BslI CCNNNNNNNGG 5 cut(s) 1127, 2757, 3080, 3311, 3329
BsmAI GTCTC 5 cut(s) 144, 603, 1834, 1870, 2817
BsmBI CGTCTC 1 cut(s) 144
BsmFI GGGAC 4 cut(s) 186, 1579, 2796, 3401
BsmI GAATGC 3 cut(s) 558, 675, 2772
BsnI GGCC 2 cut(s) 2838, 3521
Bso31I GGTCTC 1 cut(s) 2817
BsoBI CYCGRG 1 cut(s) 3075
Bsp119I TTCGAA 1 cut(s) 1145
Bsp1286I GDGCHC 2 cut(s) 504, 2540
Bsp1407I TGTACA 1 cut(s) 2006
BspACI CCGC 7 cut(s) 88, 306, 578, 828, 1525, 3033, 3135
BspANI GGCC 2 cut(s) 2838, 3521
BspCNI CTCAG 5 cut(s) 945, 1743, 1758, 1941, 2409
BspDI ATCGAT 2 cut(s) 1307, 3375
BspHI TCATGA 3 cut(s) 1321, 1939, 3513
BspLI GGNNCC 6 cut(s) 266, 1542, 1609, 2405, 2643, 2863
BspMAI CTGCAG 2 cut(s) 772, 1774
BspMI ACCTGC 1 cut(s) 1777
BspPI GGATC 8 cut(s) 338, 643, 933, 2400, 3218, 3269, 3430, 3518
BspQI GCTCTTC 1 cut(s) 413
BspT104I TTCGAA 1 cut(s) 1145
BspT107I GGYRCC 2 cut(s) 264, 1607
BspTI CTTAAG 1 cut(s) 565
BspTNI GGTCTC 1 cut(s) 2817
BsrBI CCGCTC 1 cut(s) 828
BsrDI GCAATG 1 cut(s) 2378
BsrGI TGTACA 1 cut(s) 2006
BsrI ACTGG 8 cut(s) 259, 1257, 1398, 2250, 2270, 2700, 2839, 3113
BssECI CCNNGG 3 cut(s) 2354, 2703, 2779
BssSI CACGAG 1 cut(s) 503
BssT1I CCWWGG 1 cut(s) 2354
Bst2BI CACGAG 1 cut(s) 503
Bst2UI CCWGG 6 cut(s) 978, 2045, 2705, 2780, 2820, 2835
Bst4CI ACNGT 8 cut(s) 1760, 2330, 2798, 2881, 3013, 3029, 3526, 3591
Bst6I CTCTTC 5 cut(s) 413, 892, 3225, 3546, 3572
BstAFI CTTAAG 1 cut(s) 565
BstAPI GCANNNNNTGC 1 cut(s) 458
BstAUI TGTACA 1 cut(s) 2006
BstBI TTCGAA 1 cut(s) 1145
BstC8I GCNNGC 4 cut(s) 788, 1101, 1351, 3447
BstEII GGTNACC 1 cut(s) 3428
BstH2I RGCGCY 1 cut(s) 1088
BstHHI GCGC 5 cut(s) 558, 1010, 1087, 1241, 2589
BstMAI GTCTC 5 cut(s) 144, 603, 1834, 1870, 2817
BstMWI GCNNNNNNNGC 6 cut(s) 458, 467, 2844, 2853, 3468, 3560
BstNI CCWGG 6 cut(s) 978, 2045, 2705, 2780, 2820, 2835
BstNSI RCATGY 4 cut(s) 1103, 1353, 1642, 3449
BstPI GGTNACC 1 cut(s) 3428
BstSCI CCNGG 6 cut(s) 976, 2043, 2703, 2778, 2818, 2833
BstSFI CTRYAG 2 cut(s) 768, 1770
BstSLI GKGCMC 2 cut(s) 504, 2540
BstV1I GCAGC 6 cut(s) 754, 931, 992, 1753, 3247, 3461
BstV2I GAAGAC 4 cut(s) 246, 322, 2799, 3520
BstX2I RGATCY 4 cut(s) 373, 2392, 2437, 3223
BstXI CCANNNNNNTGG 1 cut(s) 1604
BstYI RGATCY 4 cut(s) 373, 2392, 2437, 3223
Bsu15I ATCGAT 2 cut(s) 1307, 3375
BsuI GTATCC 1 cut(s) 1982
BsuRI GGCC 2 cut(s) 2838, 3521
BsuTUI ATCGAT 2 cut(s) 1307, 3375
BtgZI GCGATG 2 cut(s) 333, 448
BtrI CACGTC 1 cut(s) 2541
BtsI GCAGTG 1 cut(s) 1027
BtsIMutI CAGTG 8 cut(s) 266, 1027, 1738, 1753, 2404, 2877, 3106, 3522
BveI ACCTGC 1 cut(s) 1777
Cac8I GCNNGC 4 cut(s) 788, 1101, 1351, 3447
CciI TCATGA 3 cut(s) 1321, 1939, 3513
CfoI GCGC 5 cut(s) 558, 1010, 1087, 1241, 2589
Cfr13I GGNCC 5 cut(s) 103, 303, 934, 1114, 3053
ClaI ATCGAT 2 cut(s) 1307, 3375
CseI GACGC 3 cut(s) 240, 1761, 2759
Csp6I GTAC 4 cut(s) 141, 1554, 2007, 3243
CspCI CAANNNNNGTGG 2 cut(s) 3172, 3207
CviQI GTAC 4 cut(s) 141, 1554, 2007, 3243
DraIII CACNNNGTG 1 cut(s) 3458
DriI GACNNNNNGTC 2 cut(s) 250, 2240
EaeI YGGCCR 1 cut(s) 3519
Eam1104I CTCTTC 5 cut(s) 413, 892, 3225, 3546, 3572
Eam1105I GACNNNNNGTC 2 cut(s) 250, 2240
EarI CTCTTC 5 cut(s) 413, 892, 3225, 3546, 3572
EciI GGCGGA 1 cut(s) 1514
Eco130I CCWWGG 1 cut(s) 2354
Eco31I GGTCTC 1 cut(s) 2817
Eco47I GGWCC 5 cut(s) 103, 303, 934, 1114, 3053
Eco47III AGCGCT 1 cut(s) 1086
Eco88I CYCGRG 1 cut(s) 3075
Eco91I GGTNACC 1 cut(s) 3428
EcoO65I GGTNACC 1 cut(s) 3428
EcoRII CCWGG 6 cut(s) 976, 2043, 2703, 2778, 2818, 2833
EcoT14I CCWWGG 1 cut(s) 2354
EcoT22I ATGCAT 1 cut(s) 1491
ErhI CCWWGG 1 cut(s) 2354
Esp3I CGTCTC 1 cut(s) 144
FalI AAGNNNNNCTT 4 cut(s) 147, 179, 534, 566
FaqI GGGAC 4 cut(s) 186, 1579, 2796, 3401
FauI CCCGC 1 cut(s) 95
FauNDI CATATG 3 cut(s) 1050, 1572, 2740
FbaI TGATCA 3 cut(s) 285, 1138, 1318
Fnu4HI GCNGC 6 cut(s) 768, 945, 1006, 1742, 3261, 3450
Fsp4HI GCNGC 6 cut(s) 768, 945, 1006, 1742, 3261, 3450
GlaI GCGC 5 cut(s) 557, 1009, 1086, 1240, 2588
GluI GCNGC 6 cut(s) 768, 945, 1006, 1742, 3261, 3450
GsuI CTGGAG 4 cut(s) 1709, 2066, 2841, 3130
HaeII RGCGCY 1 cut(s) 1088
HaeIII GGCC 2 cut(s) 2838, 3521
HapII CCGG 2 cut(s) 1011, 2423
HgaI GACGC 3 cut(s) 240, 1761, 2759
HhaI GCGC 5 cut(s) 558, 1010, 1087, 1241, 2589
Hin6I GCGC 5 cut(s) 556, 1008, 1085, 1239, 2587
HinP1I GCGC 5 cut(s) 556, 1008, 1085, 1239, 2587
HincII GTYRAC 2 cut(s) 649, 2980
HindII GTYRAC 2 cut(s) 649, 2980
HindIII AAGCTT 1 cut(s) 1329
HpaII CCGG 2 cut(s) 1011, 2423
HphI GGTGA 7 cut(s) 89, 439, 1283, 1378, 1772, 3149, 3440
Hpy99I CGWCG 2 cut(s) 2545, 3218
HpyCH4III ACNGT 8 cut(s) 1760, 2330, 2798, 2881, 3013, 3029, 3526, 3591
HpyCH4IV ACGT 3 cut(s) 143, 1552, 2540
HpyF10VI GCNNNNNNNGC 6 cut(s) 458, 467, 2844, 2853, 3468, 3560
HpySE526I ACGT 3 cut(s) 143, 1552, 2540
HspAI GCGC 5 cut(s) 556, 1008, 1085, 1239, 2587
Ksp22I TGATCA 3 cut(s) 285, 1138, 1318
LguI GCTCTTC 1 cut(s) 413
LmnI GCTCC 2 cut(s) 1540, 2867
Lsp1109I GCAGC 6 cut(s) 754, 931, 992, 1753, 3247, 3461
MaeII ACGT 3 cut(s) 143, 1552, 2540
MbiI CCGCTC 1 cut(s) 828
MfeI CAATTG 1 cut(s) 1617
MflI RGATCY 4 cut(s) 373, 2392, 2437, 3223
MhlI GDGCHC 2 cut(s) 504, 2540
MlsI TGGCCA 1 cut(s) 3521
MluNI TGGCCA 1 cut(s) 3521
MlyI GAGTC 7 cut(s) 515, 1713, 1983, 2034, 2326, 2462, 2778
MmeI TCCRAC 8 cut(s) 999, 1815, 2195, 2526, 2619, 2967, 3080, 3482
Mox20I TGGCCA 1 cut(s) 3521
Mph1103I ATGCAT 1 cut(s) 1491
MroXI GAANNNNTTC 1 cut(s) 1260
MscI TGGCCA 1 cut(s) 3521
MslI CAYNNNNRTG 3 cut(s) 1643, 1938, 2717
Msp20I TGGCCA 1 cut(s) 3521
MspA1I CMGCKG 1 cut(s) 641
MspCI CTTAAG 1 cut(s) 565
MspI CCGG 2 cut(s) 1011, 2423
MspR9I CCNGG 6 cut(s) 978, 2045, 2705, 2780, 2820, 2835
MunI CAATTG 1 cut(s) 1617
Mva1269I GAATGC 3 cut(s) 558, 675, 2772
MvaI CCWGG 6 cut(s) 978, 2045, 2705, 2780, 2820, 2835
MwoI GCNNNNNNNGC 6 cut(s) 458, 467, 2844, 2853, 3468, 3560
NdeI CATATG 3 cut(s) 1050, 1572, 2740
NlaIV GGNNCC 6 cut(s) 266, 1542, 1609, 2405, 2643, 2863
NmuCI GTSAC 5 cut(s) 213, 1502, 2242, 3104, 3428
NsiI ATGCAT 1 cut(s) 1491
NspI RCATGY 4 cut(s) 1103, 1353, 1642, 3449
NspV TTCGAA 1 cut(s) 1145
PaeI GCATGC 3 cut(s) 1103, 1353, 3449
PagI TCATGA 3 cut(s) 1321, 1939, 3513
PciSI GCTCTTC 1 cut(s) 413
PcsI WCGNNNNNNNCGW 1 cut(s) 145
PctI GAATGC 3 cut(s) 558, 675, 2772
PdmI GAANNNNTTC 1 cut(s) 1260
Pfl23II CGTACG 1 cut(s) 140
PfoI TCCNGGA 3 cut(s) 976, 2043, 2818
PkrI GCNGC 6 cut(s) 769, 946, 1007, 1743, 3262, 3451
PleI GAGTC 7 cut(s) 514, 1713, 1983, 2034, 2325, 2462, 2778
PpsI GAGTC 7 cut(s) 514, 1713, 1983, 2034, 2325, 2462, 2778
PsiI TTATAA 2 cut(s) 711, 2966
Psp6I CCWGG 6 cut(s) 976, 2043, 2703, 2778, 2818, 2833
PspEI GGTNACC 1 cut(s) 3428
PspGI CCWGG 6 cut(s) 976, 2043, 2703, 2778, 2818, 2833
PspLI CGTACG 1 cut(s) 140
PspN4I GGNNCC 6 cut(s) 266, 1542, 1609, 2405, 2643, 2863
PspPI GGNCC 5 cut(s) 103, 303, 934, 1114, 3053
PstI CTGCAG 2 cut(s) 772, 1774
PsuI RGATCY 4 cut(s) 373, 2392, 2437, 3223
PvuII CAGCTG 1 cut(s) 641
RsaI GTAC 4 cut(s) 142, 1555, 2008, 3244
RsaNI GTAC 4 cut(s) 141, 1554, 2007, 3243
RseI CAYNNNNRTG 3 cut(s) 1643, 1938, 2717
SapI GCTCTTC 1 cut(s) 413
SatI GCNGC 6 cut(s) 768, 945, 1006, 1742, 3261, 3450
Sau96I GGNCC 5 cut(s) 103, 303, 934, 1114, 3053
SbfI CCTGCAGG 1 cut(s) 1774
SchI GAGTC 7 cut(s) 515, 1713, 1983, 2034, 2326, 2462, 2778
ScrFI CCNGG 6 cut(s) 978, 2045, 2705, 2780, 2820, 2835
SdaI CCTGCAGG 1 cut(s) 1774
SduI GDGCHC 2 cut(s) 504, 2540
SfcI CTRYAG 2 cut(s) 768, 1770
SfuI TTCGAA 1 cut(s) 1145
SinI GGWCC 5 cut(s) 103, 303, 934, 1114, 3053
SmiMI CAYNNNNRTG 3 cut(s) 1643, 1938, 2717
SmlI CTYRAG 6 cut(s) 64, 565, 892, 2257, 2314, 3440
SmoI CTYRAG 6 cut(s) 64, 565, 892, 2257, 2314, 3440
SpeI ACTAGT 2 cut(s) 2239, 3239
SphI GCATGC 3 cut(s) 1103, 1353, 3449
Sse8387I CCTGCAGG 1 cut(s) 1774
SsiI CCGC 7 cut(s) 88, 306, 578, 828, 1525, 3033, 3135
SspI AATATT 3 cut(s) 853, 1603, 1920
StyD4I CCNGG 6 cut(s) 976, 2043, 2703, 2778, 2818, 2833
StyI CCWWGG 1 cut(s) 2354
TaaI ACNGT 8 cut(s) 1760, 2330, 2798, 2881, 3013, 3029, 3526, 3591
TaiI ACGT 3 cut(s) 146, 1555, 2543
TatI WGTACW 1 cut(s) 2006
TscAI CASTG 8 cut(s) 266, 1034, 1738, 1753, 2404, 2884, 3113, 3529
TseFI GTSAC 5 cut(s) 213, 1502, 2242, 3104, 3428
TseI GCWGC 6 cut(s) 767, 944, 1005, 1741, 3260, 3449
Tsp45I GTSAC 5 cut(s) 213, 1502, 2242, 3104, 3428
TspGWI ACGGA 4 cut(s) 116, 1821, 2232, 2778
TspRI CASTG 8 cut(s) 266, 1034, 1738, 1753, 2404, 2884, 3113, 3529
Vha464I CTTAAG 1 cut(s) 565
VneI GTGCAC 1 cut(s) 2536
VpaK11BI GGWCC 5 cut(s) 103, 303, 934, 1114, 3053
XapI RAATTY 5 cut(s) 192, 701, 1663, 1799, 2302
XbaI TCTAGA 1 cut(s) 1981
XceI RCATGY 4 cut(s) 1103, 1353, 1642, 3449
XcmI CCANNNNNNNNNTGG 2 cut(s) 2033, 2277
XmnI GAANNNNTTC 1 cut(s) 1260
Zsp2I ATGCAT 1 cut(s) 1491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.