TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 24 - 189 | 4.3e-49 | TIR domain |
| TIR_2 | PF13676 | 26 - 137 | 1.5e-16 | TIR domain |
| NB-ARC | PF00931 | 205 - 375 | 6.5e-20 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 444 - 514 | 1.5e-18 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 658 - 746 | 6e-08 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 726 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1388 |
| AatII | GACGTC | 1 cut(s) | 360 |
| Acc16I | TGCGCA | 2 cut(s) | 468, 1727 |
| Acc65I | GGTACC | 1 cut(s) | 2863 |
| AccB1I | GGYRCC | 2 cut(s) | 282, 2863 |
| AccII | CGCG | 2 cut(s) | 235, 404 |
| AciI | CCGC | 6 cut(s) | 48, 135, 1298, 1664, 2430, 3501 |
| AclWI | GGATC | 9 cut(s) | 298, 356, 658, 2005, 2430, 3035, 3233, 3245, 3366 |
| AcsI | RAATTY | 7 cut(s) | 606, 733, 1781, 1817, 1987, 2238, 3180 |
| AcuI | CTGAAG | 2 cut(s) | 3041, 3492 |
| AcyI | GRCGYC | 1 cut(s) | 357 |
| AfaI | GTAC | 9 cut(s) | 927, 1170, 1234, 1599, 1658, 1758, 2256, 2666, 2865 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1139, 1957, 2807 |
| AflIII | ACRYGT | 1 cut(s) | 75 |
| AjiI | CACGTC | 1 cut(s) | 76 |
| AjnI | CCWGG | 8 cut(s) | 484, 1659, 1860, 2533, 2805, 2845, 2866, 3319 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2110, 2142 |
| AleI | CACNNNNGTG | 1 cut(s) | 1179 |
| Alw21I | GWGCWC | 1 cut(s) | 19 |
| Alw26I | GTCTC | 5 cut(s) | 162, 773, 811, 1964, 2516 |
| AlwI | GGATC | 9 cut(s) | 298, 356, 658, 2005, 2430, 3035, 3233, 3245, 3366 |
| Ama87I | CYCGRG | 1 cut(s) | 1675 |
| AoxI | GGCC | 3 cut(s) | 321, 1960, 2476 |
| ApeKI | GCWGC | 1 cut(s) | 1887 |
| ApoI | RAATTY | 7 cut(s) | 606, 733, 1781, 1817, 1987, 2238, 3180 |
| AseI | ATTAAT | 1 cut(s) | 630 |
| AsiSI | GCGATCGC | 1 cut(s) | 402 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1530, 1782 |
| Asp718I | GGTACC | 1 cut(s) | 2863 |
| AspA2I | CCTAGG | 1 cut(s) | 2384 |
| AspLEI | GCGC | 2 cut(s) | 469, 1728 |
| AspS9I | GGNCC | 4 cut(s) | 1126, 1960, 3035, 3344 |
| AsuC2I | CCSGG | 1 cut(s) | 993 |
| AsuHPI | GGTGA | 5 cut(s) | 107, 116, 2642, 2797, 3283 |
| AsuII | TTCGAA | 1 cut(s) | 3114 |
| AvaI | CYCGRG | 1 cut(s) | 1675 |
| AvaII | GGWCC | 3 cut(s) | 1126, 3035, 3344 |
| AvrII | CCTAGG | 1 cut(s) | 2384 |
| BaeGI | GKGCMC | 1 cut(s) | 519 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 2847, 2880, 3440, 3473 |
| BanI | GGYRCC | 2 cut(s) | 282, 2863 |
| BanII | GRGCYC | 1 cut(s) | 19 |
| BauI | CACGAG | 2 cut(s) | 416, 518 |
| BbsI | GAAGAC | 5 cut(s) | 105, 201, 340, 1913, 3423 |
| Bbv12I | GWGCWC | 1 cut(s) | 19 |
| BbvI | GCAGC | 1 cut(s) | 1899 |
| BceAI | ACGGC | 3 cut(s) | 336, 1187, 3064 |
| BciT130I | CCWGG | 8 cut(s) | 486, 1661, 1862, 2535, 2807, 2847, 2868, 3321 |
| BciVI | GTATCC | 4 cut(s) | 1395, 1560, 2545, 3441 |
| BclI | TGATCA | 2 cut(s) | 121, 2703 |
| BcnI | CCSGG | 1 cut(s) | 993 |
| BcoDI | GTCTC | 5 cut(s) | 162, 773, 811, 1964, 2516 |
| BfaI | CTAG | 8 cut(s) | 968, 1017, 1034, 1406, 1538, 1956, 2258, 2385 |
| BfmI | CTRYAG | 1 cut(s) | 2265 |
| BfuI | GTATCC | 4 cut(s) | 1395, 1560, 2545, 3441 |
| BglII | AGATCT | 2 cut(s) | 478, 2467 |
| BisI | GCNGC | 1 cut(s) | 1888 |
| BlnI | CCTAGG | 1 cut(s) | 2384 |
| BlsI | GCNGC | 1 cut(s) | 1889 |
| BmcAI | AGTACT | 1 cut(s) | 2256 |
| Bme1390I | CCNGG | 9 cut(s) | 486, 993, 1661, 1862, 2535, 2807, 2847, 2868, 3321 |
| Bme18I | GGWCC | 3 cut(s) | 1126, 3035, 3344 |
| BmeT110I | CYCGRG | 1 cut(s) | 1675 |
| BmgBI | CACGTC | 1 cut(s) | 76 |
| BmgT120I | GGNCC | 4 cut(s) | 1126, 1960, 3035, 3344 |
| BmiI | GGNNCC | 7 cut(s) | 284, 793, 950, 1213, 1961, 2865, 2942 |
| BmrFI | CCNGG | 9 cut(s) | 486, 993, 1661, 1862, 2535, 2807, 2847, 2868, 3321 |
| BmsI | GCATC | 7 cut(s) | 963, 1485, 1507, 1585, 1713, 2365, 3495 |
| BpiI | GAAGAC | 5 cut(s) | 105, 201, 340, 1913, 3423 |
| BpmI | CTGGAG | 3 cut(s) | 233, 797, 1727 |
| Bpu14I | TTCGAA | 1 cut(s) | 3114 |
| BpuEI | CTTGAG | 3 cut(s) | 103, 1816, 2155 |
| BpuMI | CCSGG | 1 cut(s) | 993 |
| BsaAI | YACGTR | 2 cut(s) | 1756, 3155 |
| BsaHI | GRCGYC | 1 cut(s) | 357 |
| BsaI | GGTCTC | 1 cut(s) | 773 |
| BsaJI | CCNNGG | 6 cut(s) | 1206, 2384, 2736, 2806, 2859, 2944 |
| BsaWI | WCCGGW | 1 cut(s) | 143 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1139, 1957, 2807 |
| Bse118I | RCCGGY | 1 cut(s) | 343 |
| Bse1I | ACTGG | 4 cut(s) | 2189, 2781, 2984, 3231 |
| Bse3DI | GCAATG | 3 cut(s) | 708, 2282, 2408 |
| BseBI | CCWGG | 8 cut(s) | 486, 1661, 1862, 2535, 2807, 2847, 2868, 3321 |
| BseDI | CCNNGG | 6 cut(s) | 1206, 2384, 2736, 2806, 2859, 2944 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1139, 1957, 2807 |
| BseMI | GCAATG | 3 cut(s) | 708, 2282, 2408 |
| BseMII | CTCAG | 6 cut(s) | 74, 1292, 1937, 1959, 2950, 3449 |
| BseNI | ACTGG | 4 cut(s) | 2189, 2781, 2984, 3231 |
| BseRI | GAGGAG | 2 cut(s) | 204, 572 |
| BseSI | GKGCMC | 1 cut(s) | 519 |
| BseXI | GCAGC | 1 cut(s) | 1899 |
| BsgI | GTGCAG | 2 cut(s) | 2314, 2947 |
| Bsh1236I | CGCG | 2 cut(s) | 235, 404 |
| Bsh1285I | CGRYCG | 1 cut(s) | 402 |
| BshFI | GGCC | 3 cut(s) | 323, 1962, 2478 |
| BshNI | GGYRCC | 2 cut(s) | 282, 2863 |
| BsiEI | CGRYCG | 1 cut(s) | 402 |
| BsiHKAI | GWGCWC | 1 cut(s) | 19 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1675 |
| BsiSI | CCGG | 3 cut(s) | 144, 344, 992 |
| BslFI | GGGAC | 2 cut(s) | 2309, 3455 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1139, 1957, 2807 |
| BsmAI | GTCTC | 5 cut(s) | 162, 773, 811, 1964, 2516 |
| BsmBI | CGTCTC | 1 cut(s) | 162 |
| BsmFI | GGGAC | 2 cut(s) | 2309, 3455 |
| BsmI | GAATGC | 4 cut(s) | 451, 1418, 1437, 3051 |
| BsnI | GGCC | 3 cut(s) | 323, 1962, 2478 |
| Bso31I | GGTCTC | 1 cut(s) | 773 |
| BsoBI | CYCGRG | 1 cut(s) | 1675 |
| Bsp119I | TTCGAA | 1 cut(s) | 3114 |
| Bsp1286I | GDGCHC | 2 cut(s) | 19, 519 |
| Bsp19I | CCATGG | 1 cut(s) | 2736 |
| Bsp68I | TCGCGA | 1 cut(s) | 235 |
| BspACI | CCGC | 6 cut(s) | 48, 135, 1298, 1664, 2430, 3501 |
| BspANI | GGCC | 3 cut(s) | 323, 1962, 2478 |
| BspCNI | CTCAG | 6 cut(s) | 73, 1293, 1938, 1960, 2949, 3448 |
| BspFNI | CGCG | 2 cut(s) | 235, 404 |
| BspHI | TCATGA | 1 cut(s) | 610 |
| BspLI | GGNNCC | 7 cut(s) | 284, 793, 950, 1213, 1961, 2865, 2942 |
| BspPI | GGATC | 9 cut(s) | 298, 356, 658, 2005, 2430, 3035, 3233, 3245, 3366 |
| BspQI | GCTCTTC | 1 cut(s) | 1203 |
| BspT104I | TTCGAA | 1 cut(s) | 3114 |
| BspT107I | GGYRCC | 2 cut(s) | 282, 2863 |
| BspTNI | GGTCTC | 1 cut(s) | 773 |
| BsrDI | GCAATG | 3 cut(s) | 708, 2282, 2408 |
| BsrFI | RCCGGY | 1 cut(s) | 343 |
| BsrI | ACTGG | 4 cut(s) | 2189, 2781, 2984, 3231 |
| BssAI | RCCGGY | 1 cut(s) | 343 |
| BssECI | CCNNGG | 6 cut(s) | 1206, 2384, 2736, 2806, 2859, 2944 |
| BssNI | GRCGYC | 1 cut(s) | 357 |
| BssSI | CACGAG | 2 cut(s) | 416, 518 |
| BssT1I | CCWWGG | 3 cut(s) | 1206, 2384, 2736 |
| Bst2BI | CACGAG | 2 cut(s) | 416, 518 |
| Bst2UI | CCWGG | 8 cut(s) | 486, 1661, 1862, 2535, 2807, 2847, 2868, 3321 |
| Bst4CI | ACNGT | 2 cut(s) | 2564, 2917 |
| Bst6I | CTCTTC | 4 cut(s) | 277, 419, 1203, 1516 |
| BstACI | GRCGYC | 1 cut(s) | 357 |
| BstBAI | YACGTR | 2 cut(s) | 1756, 3155 |
| BstBI | TTCGAA | 1 cut(s) | 3114 |
| BstC8I | GCNNGC | 2 cut(s) | 1113, 2029 |
| BstDSI | CCRYGG | 1 cut(s) | 2736 |
| BstEII | GGTNACC | 1 cut(s) | 1465 |
| BstFNI | CGCG | 2 cut(s) | 235, 404 |
| BstHHI | GCGC | 2 cut(s) | 469, 1728 |
| BstMAI | GTCTC | 5 cut(s) | 162, 773, 811, 1964, 2516 |
| BstMCI | CGRYCG | 1 cut(s) | 402 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 473, 1046, 3216 |
| BstNI | CCWGG | 8 cut(s) | 486, 1661, 1862, 2535, 2807, 2847, 2868, 3321 |
| BstNSI | RCATGY | 4 cut(s) | 1115, 1365, 1651, 3045 |
| BstPI | GGTNACC | 1 cut(s) | 1465 |
| BstSCI | CCNGG | 9 cut(s) | 484, 991, 1659, 1860, 2533, 2805, 2845, 2866, 3319 |
| BstSFI | CTRYAG | 1 cut(s) | 2265 |
| BstSLI | GKGCMC | 1 cut(s) | 519 |
| BstUI | CGCG | 2 cut(s) | 235, 404 |
| BstV1I | GCAGC | 1 cut(s) | 1899 |
| BstV2I | GAAGAC | 5 cut(s) | 105, 201, 340, 1913, 3423 |
| BstX2I | RGATCY | 5 cut(s) | 478, 2422, 2467, 3027, 3238 |
| BstYI | RGATCY | 5 cut(s) | 478, 2422, 2467, 3027, 3238 |
| BsuI | GTATCC | 4 cut(s) | 1395, 1560, 2545, 3441 |
| BsuRI | GGCC | 3 cut(s) | 323, 1962, 2478 |
| BtgI | CCRYGG | 1 cut(s) | 2736 |
| BtgZI | GCGATG | 1 cut(s) | 3138 |
| BtrI | CACGTC | 1 cut(s) | 76 |
| BtsI | GCAGTG | 1 cut(s) | 1186 |
| BtsIMutI | CAGTG | 4 cut(s) | 117, 1186, 2196, 3147 |
| BtuMI | TCGCGA | 1 cut(s) | 235 |
| Cac8I | GCNNGC | 2 cut(s) | 1113, 2029 |
| CciI | TCATGA | 1 cut(s) | 610 |
| CfoI | GCGC | 2 cut(s) | 469, 1728 |
| Cfr10I | RCCGGY | 1 cut(s) | 343 |
| Cfr13I | GGNCC | 4 cut(s) | 1126, 1960, 3035, 3344 |
| CseI | GACGC | 1 cut(s) | 3444 |
| Csp6I | GTAC | 9 cut(s) | 926, 1169, 1233, 1598, 1657, 1757, 2255, 2665, 2864 |
| CviQI | GTAC | 9 cut(s) | 926, 1169, 1233, 1598, 1657, 1757, 2255, 2665, 2864 |
| DraI | TTTAAA | 1 cut(s) | 1077 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1388 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1388 |
| Eam1104I | CTCTTC | 4 cut(s) | 277, 419, 1203, 1516 |
| EarI | CTCTTC | 4 cut(s) | 277, 419, 1203, 1516 |
| EciI | GGCGGA | 1 cut(s) | 1679 |
| Ecl136II | GAGCTC | 1 cut(s) | 17 |
| Eco130I | CCWWGG | 3 cut(s) | 1206, 2384, 2736 |
| Eco147I | AGGCCT | 1 cut(s) | 2478 |
| Eco24I | GRGCYC | 1 cut(s) | 19 |
| Eco31I | GGTCTC | 1 cut(s) | 773 |
| Eco32I | GATATC | 1 cut(s) | 1288 |
| Eco47I | GGWCC | 3 cut(s) | 1126, 3035, 3344 |
| Eco53kI | GAGCTC | 1 cut(s) | 17 |
| Eco57I | CTGAAG | 2 cut(s) | 3041, 3492 |
| Eco88I | CYCGRG | 1 cut(s) | 1675 |
| Eco91I | GGTNACC | 1 cut(s) | 1465 |
| EcoICRI | GAGCTC | 1 cut(s) | 17 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1960 |
| EcoO65I | GGTNACC | 1 cut(s) | 1465 |
| EcoRI | GAATTC | 2 cut(s) | 606, 3180 |
| EcoRII | CCWGG | 8 cut(s) | 484, 1659, 1860, 2533, 2805, 2845, 2866, 3319 |
| EcoRV | GATATC | 1 cut(s) | 1288 |
| EcoT14I | CCWWGG | 3 cut(s) | 1206, 2384, 2736 |
| EcoT22I | ATGCAT | 4 cut(s) | 451, 1500, 1714, 2380 |
| EcoT38I | GRGCYC | 1 cut(s) | 19 |
| ErhI | CCWWGG | 3 cut(s) | 1206, 2384, 2736 |
| Esp3I | CGTCTC | 1 cut(s) | 162 |
| FaqI | GGGAC | 2 cut(s) | 2309, 3455 |
| FauNDI | CATATG | 1 cut(s) | 2054 |
| FbaI | TGATCA | 2 cut(s) | 121, 2703 |
| Fnu4HI | GCNGC | 1 cut(s) | 1888 |
| FriOI | GRGCYC | 1 cut(s) | 19 |
| Fsp4HI | GCNGC | 1 cut(s) | 1888 |
| FspBI | CTAG | 8 cut(s) | 968, 1017, 1034, 1406, 1538, 1956, 2258, 2385 |
| FspI | TGCGCA | 2 cut(s) | 468, 1727 |
| GlaI | GCGC | 2 cut(s) | 468, 1727 |
| GluI | GCNGC | 1 cut(s) | 1888 |
| GsuI | CTGGAG | 3 cut(s) | 233, 797, 1727 |
| HaeIII | GGCC | 3 cut(s) | 323, 1962, 2478 |
| HapII | CCGG | 3 cut(s) | 144, 344, 992 |
| HgaI | GACGC | 1 cut(s) | 3444 |
| HhaI | GCGC | 2 cut(s) | 469, 1728 |
| Hin1I | GRCGYC | 1 cut(s) | 357 |
| Hin6I | GCGC | 2 cut(s) | 467, 1726 |
| HinP1I | GCGC | 2 cut(s) | 467, 1726 |
| HincII | GTYRAC | 1 cut(s) | 3459 |
| HindII | GTYRAC | 1 cut(s) | 3459 |
| HindIII | AAGCTT | 2 cut(s) | 27, 2222 |
| HpaII | CCGG | 3 cut(s) | 144, 344, 992 |
| HphI | GGTGA | 5 cut(s) | 107, 116, 2642, 2797, 3283 |
| Hpy166II | GTNNAC | 6 cut(s) | 1184, 2077, 2194, 3147, 3344, 3459 |
| Hpy8I | GTNNAC | 6 cut(s) | 1184, 2077, 2194, 3147, 3344, 3459 |
| Hpy99I | CGWCG | 7 cut(s) | 77, 176, 248, 251, 293, 359, 362 |
| HpyCH4III | ACNGT | 2 cut(s) | 2564, 2917 |
| HpyCH4IV | ACGT | 5 cut(s) | 75, 357, 1561, 1755, 3154 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 473, 1046, 3216 |
| HpySE526I | ACGT | 5 cut(s) | 75, 357, 1561, 1755, 3154 |
| Hsp92I | GRCGYC | 1 cut(s) | 357 |
| HspAI | GCGC | 2 cut(s) | 467, 1726 |
| KpnI | GGTACC | 1 cut(s) | 2867 |
| Ksp22I | TGATCA | 2 cut(s) | 121, 2703 |
| LguI | GCTCTTC | 1 cut(s) | 1203 |
| LmnI | GCTCC | 5 cut(s) | 146, 245, 390, 948, 2118 |
| Lsp1109I | GCAGC | 1 cut(s) | 1899 |
| LweI | GCATC | 7 cut(s) | 963, 1485, 1507, 1585, 1713, 2365, 3495 |
| MaeI | CTAG | 8 cut(s) | 968, 1017, 1034, 1406, 1538, 1956, 2258, 2385 |
| MaeII | ACGT | 5 cut(s) | 75, 357, 1561, 1755, 3154 |
| MfeI | CAATTG | 2 cut(s) | 1428, 2679 |
| MflI | RGATCY | 5 cut(s) | 478, 2422, 2467, 3027, 3238 |
| MhlI | GDGCHC | 2 cut(s) | 19, 519 |
| MlyI | GAGTC | 8 cut(s) | 530, 627, 1310, 1838, 2356, 2518, 2741, 3413 |
| MmeI | TCCRAC | 2 cut(s) | 250, 3336 |
| Mph1103I | ATGCAT | 4 cut(s) | 451, 1500, 1714, 2380 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1530, 1782 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1179, 1652, 2750, 2820, 3264 |
| MspA1I | CMGCKG | 1 cut(s) | 1300 |
| MspI | CCGG | 3 cut(s) | 144, 344, 992 |
| MspR9I | CCNGG | 9 cut(s) | 486, 993, 1661, 1862, 2535, 2807, 2847, 2868, 3321 |
| MunI | CAATTG | 2 cut(s) | 1428, 2679 |
| Mva1269I | GAATGC | 4 cut(s) | 451, 1418, 1437, 3051 |
| MvaI | CCWGG | 8 cut(s) | 486, 1661, 1862, 2535, 2807, 2847, 2868, 3321 |
| MvnI | CGCG | 2 cut(s) | 235, 404 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 473, 1046, 3216 |
| NciI | CCSGG | 1 cut(s) | 993 |
| NcoI | CCATGG | 1 cut(s) | 2736 |
| NdeI | CATATG | 1 cut(s) | 2054 |
| NlaIV | GGNNCC | 7 cut(s) | 284, 793, 950, 1213, 1961, 2865, 2942 |
| NmuCI | GTSAC | 5 cut(s) | 1511, 1751, 2592, 2785, 3059 |
| NruI | TCGCGA | 1 cut(s) | 235 |
| NsbI | TGCGCA | 2 cut(s) | 468, 1727 |
| NsiI | ATGCAT | 4 cut(s) | 451, 1500, 1714, 2380 |
| NspI | RCATGY | 4 cut(s) | 1115, 1365, 1651, 3045 |
| NspV | TTCGAA | 1 cut(s) | 3114 |
| OliI | CACNNNNGTG | 1 cut(s) | 1179 |
| PaeI | GCATGC | 1 cut(s) | 1115 |
| PaeR7I | CTCGAG | 1 cut(s) | 1675 |
| PagI | TCATGA | 1 cut(s) | 610 |
| PceI | AGGCCT | 1 cut(s) | 2478 |
| PciSI | GCTCTTC | 1 cut(s) | 1203 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 163, 3120 |
| PctI | GAATGC | 4 cut(s) | 451, 1418, 1437, 3051 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1530, 1782 |
| PfoI | TCCNGGA | 3 cut(s) | 484, 991, 2845 |
| PkrI | GCNGC | 1 cut(s) | 1889 |
| Ple19I | CGATCG | 1 cut(s) | 402 |
| PleI | GAGTC | 8 cut(s) | 529, 626, 1310, 1837, 2355, 2517, 2740, 3413 |
| PpsI | GAGTC | 8 cut(s) | 529, 626, 1310, 1837, 2355, 2517, 2740, 3413 |
| Ppu21I | YACGTR | 2 cut(s) | 1756, 3155 |
| PshBI | ATTAAT | 1 cut(s) | 630 |
| PsiI | TTATAA | 1 cut(s) | 726 |
| Psp124BI | GAGCTC | 1 cut(s) | 19 |
| Psp6I | CCWGG | 8 cut(s) | 484, 1659, 1860, 2533, 2805, 2845, 2866, 3319 |
| PspEI | GGTNACC | 1 cut(s) | 1465 |
| PspGI | CCWGG | 8 cut(s) | 484, 1659, 1860, 2533, 2805, 2845, 2866, 3319 |
| PspN4I | GGNNCC | 7 cut(s) | 284, 793, 950, 1213, 1961, 2865, 2942 |
| PspPI | GGNCC | 4 cut(s) | 1126, 1960, 3035, 3344 |
| PspXI | VCTCGAGB | 1 cut(s) | 1675 |
| PsuI | RGATCY | 5 cut(s) | 478, 2422, 2467, 3027, 3238 |
| PvuI | CGATCG | 1 cut(s) | 402 |
| RgaI | GCGATCGC | 1 cut(s) | 402 |
| RruI | TCGCGA | 1 cut(s) | 235 |
| RsaI | GTAC | 9 cut(s) | 927, 1170, 1234, 1599, 1658, 1758, 2256, 2666, 2865 |
| RsaNI | GTAC | 9 cut(s) | 926, 1169, 1233, 1598, 1657, 1757, 2255, 2665, 2864 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1179, 1652, 2750, 2820, 3264 |
| SacI | GAGCTC | 1 cut(s) | 19 |
| SapI | GCTCTTC | 1 cut(s) | 1203 |
| SatI | GCNGC | 1 cut(s) | 1888 |
| Sau96I | GGNCC | 4 cut(s) | 1126, 1960, 3035, 3344 |
| ScaI | AGTACT | 1 cut(s) | 2256 |
| SchI | GAGTC | 8 cut(s) | 530, 627, 1310, 1838, 2356, 2518, 2741, 3413 |
| ScrFI | CCNGG | 9 cut(s) | 486, 993, 1661, 1862, 2535, 2807, 2847, 2868, 3321 |
| SduI | GDGCHC | 2 cut(s) | 19, 519 |
| SfaAI | GCGATCGC | 1 cut(s) | 402 |
| SfaNI | GCATC | 7 cut(s) | 963, 1485, 1507, 1585, 1713, 2365, 3495 |
| SfcI | CTRYAG | 1 cut(s) | 2265 |
| Sfr274I | CTCGAG | 1 cut(s) | 1675 |
| SfuI | TTCGAA | 1 cut(s) | 3114 |
| SgfI | GCGATCGC | 1 cut(s) | 402 |
| SinI | GGWCC | 3 cut(s) | 1126, 3035, 3344 |
| SlaI | CTCGAG | 1 cut(s) | 1675 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1179, 1652, 2750, 2820, 3264 |
| SmlI | CTYRAG | 4 cut(s) | 82, 1675, 1795, 2170 |
| SmoI | CTYRAG | 4 cut(s) | 82, 1675, 1795, 2170 |
| SphI | GCATGC | 1 cut(s) | 1115 |
| SseBI | AGGCCT | 1 cut(s) | 2478 |
| SsiI | CCGC | 6 cut(s) | 48, 135, 1298, 1664, 2430, 3501 |
| SspI | AATATT | 5 cut(s) | 628, 2086, 2660, 3283, 3327 |
| SspMI | CTAG | 8 cut(s) | 968, 1017, 1034, 1406, 1538, 1956, 2258, 2385 |
| SstI | GAGCTC | 1 cut(s) | 19 |
| StuI | AGGCCT | 1 cut(s) | 2478 |
| StyD4I | CCNGG | 9 cut(s) | 484, 991, 1659, 1860, 2533, 2805, 2845, 2866, 3319 |
| StyI | CCWWGG | 3 cut(s) | 1206, 2384, 2736 |
| TaaI | ACNGT | 2 cut(s) | 2564, 2917 |
| TaiI | ACGT | 5 cut(s) | 78, 360, 1564, 1758, 3157 |
| TaqI | TCGA | 8 cut(s) | 288, 360, 616, 621, 930, 1676, 2481, 3114 |
| TaqII | GACCGA | 1 cut(s) | 3052 |
| TatI | WGTACW | 4 cut(s) | 925, 1232, 1597, 2254 |
| TscAI | CASTG | 4 cut(s) | 124, 1186, 2196, 3147 |
| TseFI | GTSAC | 5 cut(s) | 1511, 1751, 2592, 2785, 3059 |
| TseI | GCWGC | 1 cut(s) | 1887 |
| Tsp45I | GTSAC | 5 cut(s) | 1511, 1751, 2592, 2785, 3059 |
| TspGWI | ACGGA | 1 cut(s) | 232 |
| TspRI | CASTG | 4 cut(s) | 124, 1186, 2196, 3147 |
| VpaK11BI | GGWCC | 3 cut(s) | 1126, 3035, 3344 |
| VspI | ATTAAT | 1 cut(s) | 630 |
| XapI | RAATTY | 7 cut(s) | 606, 733, 1781, 1817, 1987, 2238, 3180 |
| XbaI | TCTAGA | 1 cut(s) | 1033 |
| XceI | RCATGY | 4 cut(s) | 1115, 1365, 1651, 3045 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3095 |
| XhoI | CTCGAG | 1 cut(s) | 1675 |
| XmaJI | CCTAGG | 1 cut(s) | 2384 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1530, 1782 |
| XspI | CTAG | 8 cut(s) | 968, 1017, 1034, 1406, 1538, 1956, 2258, 2385 |
| ZraI | GACGTC | 1 cut(s) | 358 |
| ZrmI | AGTACT | 1 cut(s) | 2256 |
| Zsp2I | ATGCAT | 4 cut(s) | 451, 1500, 1714, 2380 |