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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 133, 144 |
| AciI | CCGC | 2 cut(s) | 142, 192 |
| AdeI | CACNNNGTG | 1 cut(s) | 77 |
| AfaI | GTAC | 1 cut(s) | 153 |
| AgsI | TTSAA | 3 cut(s) | 178, 245, 276 |
| AjiI | CACGTC | 1 cut(s) | 160 |
| AjnI | CCWGG | 1 cut(s) | 21 |
| AluBI | AGCT | 2 cut(s) | 279, 306 |
| AluI | AGCT | 2 cut(s) | 279, 306 |
| Alw26I | GTCTC | 1 cut(s) | 261 |
| AoxI | GGCC | 1 cut(s) | 19 |
| ApeKI | GCWGC | 4 cut(s) | 27, 30, 33, 128 |
| AspLEI | GCGC | 2 cut(s) | 133, 135 |
| BbvI | GCAGC | 4 cut(s) | 39, 42, 45, 115 |
| BccI | CCATC | 3 cut(s) | 140, 193, 230 |
| BceAI | ACGGC | 1 cut(s) | 205 |
| BciT130I | CCWGG | 1 cut(s) | 23 |
| BciVI | GTATCC | 1 cut(s) | 284 |
| BcoDI | GTCTC | 1 cut(s) | 261 |
| BfuI | GTATCC | 1 cut(s) | 284 |
| BisI | GCNGC | 5 cut(s) | 28, 31, 34, 129, 142 |
| BlsI | GCNGC | 5 cut(s) | 29, 32, 35, 130, 143 |
| BmcAI | AGTACT | 1 cut(s) | 153 |
| Bme1390I | CCNGG | 1 cut(s) | 23 |
| BmgBI | CACGTC | 1 cut(s) | 160 |
| BmiI | GGNNCC | 1 cut(s) | 257 |
| BmrFI | CCNGG | 1 cut(s) | 23 |
| BsaI | GGTCTC | 1 cut(s) | 261 |
| BsaJI | CCNNGG | 1 cut(s) | 22 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 224, 254 |
| BseBI | CCWGG | 1 cut(s) | 23 |
| BseDI | CCNNGG | 1 cut(s) | 22 |
| BseGI | GGATG | 2 cut(s) | 204, 241 |
| BseMII | CTCAG | 1 cut(s) | 161 |
| BsePI | GCGCGC | 1 cut(s) | 131 |
| BseRI | GAGGAG | 1 cut(s) | 30 |
| BseXI | GCAGC | 4 cut(s) | 39, 42, 45, 115 |
| BseYI | CCCAGC | 1 cut(s) | 48 |
| BsgI | GTGCAG | 1 cut(s) | 140 |
| Bsh1236I | CGCG | 2 cut(s) | 133, 144 |
| BshFI | GGCC | 1 cut(s) | 21 |
| BslFI | GGGAC | 1 cut(s) | 220 |
| BsmAI | GTCTC | 1 cut(s) | 261 |
| BsmFI | GGGAC | 1 cut(s) | 220 |
| BsnI | GGCC | 1 cut(s) | 21 |
| Bso31I | GGTCTC | 1 cut(s) | 261 |
| BspACI | CCGC | 2 cut(s) | 142, 192 |
| BspANI | GGCC | 1 cut(s) | 21 |
| BspCNI | CTCAG | 1 cut(s) | 162 |
| BspFNI | CGCG | 2 cut(s) | 133, 144 |
| BspLI | GGNNCC | 1 cut(s) | 257 |
| BspTNI | GGTCTC | 1 cut(s) | 261 |
| BssECI | CCNNGG | 1 cut(s) | 22 |
| BssHII | GCGCGC | 1 cut(s) | 131 |
| Bst2UI | CCWGG | 1 cut(s) | 23 |
| BstC8I | GCNNGC | 1 cut(s) | 133 |
| BstDEI | CTNAG | 2 cut(s) | 170, 210 |
| BstF5I | GGATG | 2 cut(s) | 204, 241 |
| BstFNI | CGCG | 2 cut(s) | 133, 144 |
| BstHHI | GCGC | 2 cut(s) | 133, 135 |
| BstMAI | GTCTC | 1 cut(s) | 261 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 27, 33, 141 |
| BstNI | CCWGG | 1 cut(s) | 23 |
| BstSCI | CCNGG | 1 cut(s) | 21 |
| BstUI | CGCG | 2 cut(s) | 133, 144 |
| BstV1I | GCAGC | 4 cut(s) | 39, 42, 45, 115 |
| BsuI | GTATCC | 1 cut(s) | 284 |
| BsuRI | GGCC | 1 cut(s) | 21 |
| BtgZI | GCGATG | 1 cut(s) | 159 |
| BtrI | CACGTC | 1 cut(s) | 160 |
| BtsCI | GGATG | 2 cut(s) | 204, 241 |
| Cac8I | GCNNGC | 1 cut(s) | 133 |
| CfoI | GCGC | 2 cut(s) | 133, 135 |
| Csp6I | GTAC | 1 cut(s) | 152 |
| CviJI | RGCY | 5 cut(s) | 21, 128, 279, 285, 306 |
| CviKI_1 | RGCY | 5 cut(s) | 21, 128, 279, 285, 306 |
| CviQI | GTAC | 1 cut(s) | 152 |
| DdeI | CTNAG | 2 cut(s) | 170, 210 |
| DraIII | CACNNNGTG | 1 cut(s) | 77 |
| Eco31I | GGTCTC | 1 cut(s) | 261 |
| EcoRII | CCWGG | 1 cut(s) | 21 |
| FaiI | YATR | 3 cut(s) | 117, 119, 167 |
| FaqI | GGGAC | 1 cut(s) | 220 |
| FauNDI | CATATG | 1 cut(s) | 117 |
| Fnu4HI | GCNGC | 5 cut(s) | 28, 31, 34, 129, 142 |
| FokI | GGATG | 2 cut(s) | 211, 248 |
| Fsp4HI | GCNGC | 5 cut(s) | 28, 31, 34, 129, 142 |
| GlaI | GCGC | 2 cut(s) | 132, 134 |
| GluI | GCNGC | 5 cut(s) | 28, 31, 34, 129, 142 |
| GsaI | CCCAGC | 1 cut(s) | 52 |
| HaeIII | GGCC | 1 cut(s) | 21 |
| HhaI | GCGC | 2 cut(s) | 133, 135 |
| Hin6I | GCGC | 2 cut(s) | 131, 133 |
| HinP1I | GCGC | 2 cut(s) | 131, 133 |
| Hpy188I | TCNGA | 2 cut(s) | 94, 266 |
| Hpy188III | TCNNGA | 1 cut(s) | 288 |
| Hpy99I | CGWCG | 1 cut(s) | 191 |
| HpyAV | CCTTC | 3 cut(s) | 51, 172, 282 |
| HpyCH4IV | ACGT | 1 cut(s) | 159 |
| HpyCH4V | TGCA | 1 cut(s) | 157 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 27, 33, 141 |
| HpyF3I | CTNAG | 2 cut(s) | 170, 210 |
| HpySE526I | ACGT | 1 cut(s) | 159 |
| HspAI | GCGC | 2 cut(s) | 131, 133 |
| LpnPI | CCDG | 6 cut(s) | 8, 34, 35, 267, 273, 308 |
| Lsp1109I | GCAGC | 4 cut(s) | 39, 42, 45, 115 |
| MaeII | ACGT | 1 cut(s) | 159 |
| MboII | GAAGA | 1 cut(s) | 227 |
| MluCI | AATT | 2 cut(s) | 38, 337 |
| MnlI | CCTC | 5 cut(s) | 8, 11, 226, 246, 269 |
| MseI | TTAA | 1 cut(s) | 340 |
| MspR9I | CCNGG | 1 cut(s) | 23 |
| MvaI | CCWGG | 1 cut(s) | 23 |
| MvnI | CGCG | 2 cut(s) | 133, 144 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 27, 33, 141 |
| NdeI | CATATG | 1 cut(s) | 117 |
| NlaIV | GGNNCC | 1 cut(s) | 257 |
| PauI | GCGCGC | 1 cut(s) | 131 |
| PkrI | GCNGC | 5 cut(s) | 29, 32, 35, 130, 143 |
| Psp6I | CCWGG | 1 cut(s) | 21 |
| PspFI | CCCAGC | 1 cut(s) | 48 |
| PspGI | CCWGG | 1 cut(s) | 21 |
| PspN4I | GGNNCC | 1 cut(s) | 257 |
| PteI | GCGCGC | 1 cut(s) | 131 |
| RsaI | GTAC | 1 cut(s) | 153 |
| RsaNI | GTAC | 1 cut(s) | 152 |
| SaqAI | TTAA | 1 cut(s) | 340 |
| SatI | GCNGC | 5 cut(s) | 28, 31, 34, 129, 142 |
| ScaI | AGTACT | 1 cut(s) | 153 |
| ScrFI | CCNGG | 1 cut(s) | 23 |
| SetI | ASST | 5 cut(s) | 162, 183, 257, 281, 308 |
| Sse9I | AATT | 2 cut(s) | 38, 337 |
| SsiI | CCGC | 2 cut(s) | 142, 192 |
| StyD4I | CCNGG | 1 cut(s) | 21 |
| TaiI | ACGT | 1 cut(s) | 162 |
| TaqI | TCGA | 1 cut(s) | 186 |
| TasI | AATT | 2 cut(s) | 38, 337 |
| TatI | WGTACW | 1 cut(s) | 151 |
| TauI | GCSGC | 1 cut(s) | 144 |
| Tru1I | TTAA | 1 cut(s) | 340 |
| Tru9I | TTAA | 1 cut(s) | 340 |
| TseI | GCWGC | 4 cut(s) | 27, 30, 33, 128 |
| TspDTI | ATGAA | 1 cut(s) | 104 |
| ZrmI | AGTACT | 1 cut(s) | 153 |