MD15G1416500.v1.1

TMV resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000036
Physical Location & Seq
Reverse (-)
51806694 .. 51810703
4010 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1416500.v1.1.491

Sequence Viewer

Length: 3087 bp
ATGGTCTTACAAAACCAAGCTGATGGGTATGAGTCAAGGTTTATCGAAAAAATTGTTAAAGTGGTTGGAGACAAGTTAAGTCGCACACCATTGATTGTTGAACCAAAATTGATTGGAATCGAATCTCAAGTCGAAGACATCAATTTGTGGTTACAAGATGGATCAACCGATGTCGGGATACTGGTTGTTTGTGGCATGTCTGGAATAGGGAAGACAACCATTGCAAAACATGTTTACAATTCAAACTTTAGAAGCTTTAAAGGAAGTAGTTTCATTGAAAATATCAGTGAAACAGCAGATCGACCAAATGGCTTAGGTCAAATACAAAAGCAACTTCTTTCTGATATTTTGAACGGCAGAGAAGTGAAAATACATGGTGTTAGTGAGGGACTAAGAAAGATTGAAAGAGCCATAAGCTCTAGAAGAGTGCTTCTTGTTCTTGATGATGTGGACCATTTGGACCAATTAGATGCAGTACTAAAGATGAAAGATCGGTTTTATCCGGGAAGTAAGATACTTATAACCACTAGGCGTGAAAGGTTGCTAAAGGCACATCAAGTTACAAAGGTGCACAAAGTTGGAACTTTGTATTTCAATGAGTCATTAGAGCTTTTCAGTTGGCATGCTTTTCGCCAGTATCATCCCCCTAGTGGTTACGTGGAATATTCAAAAAAGGTTGTACACTACTGCGACGGACTTCCATTAGCTCTAAAAGTTTTGGGCTCTTCTTTATCAGGGGAACGTATAGATGTATGGGAAAGTGCATTGGAGAAGCTAAAAGTGATCCCTAATGGTGAAATCATGTATAAACTAAGAATGAGCTATGATAGTTTACAAGATGACCATGACCGGAAATTATTCCTCCACATTGCTTGTTTTCTAATTGGAAGGAACAAAAGCTACATTGTTAAAATACTCGATGGATGTGATTTCTATACAATTGTTGGTATTCAAAATCTCATTGATAGATGCTTGGTGACAATTGATGGATGCAACAACGTGCAAATGCATGACATGATCCGTGACATGGGAAGAGAAATTGTTCGCCATGAATCAGAAGAGCTTGGAAAACGTAGTAGATTATGGCGCCATAAGGATTCTTTCGAAGTACTGAGGGAAAAGAAGGGTACACAAACAATTCAAGGTCTTGCCCTGGATATGCGTATGCATCTTCCAAATAGACCAATAAACACAAATGAGACAGTTTTGGAAACCAATGCATTTGAAAGGATGTGCAATTTACAACTACTCAATCTTAGTCATGTACGACTGGATGGATGTTATGCAAATTTCCCTACAAGATTAAGATGGTTGTGTTGGCTTGAATTTCCATTGGATTCTATACCTGTTGATCTTCCTTTGGAGTGTCTAATTGTTCTTGAAATGCAACATAGTAGCTTAAGACAAGTCTGGAAAGGAACAAAATTTCTTCCATCGTTGAAGATCCTTGACGTCAGCCATTCCCATGCTCTCATTGAAATCATGGACTTCTCACTATGCCCCAATCTAGAAGAATTGATTCTTGTTGATTGCACCAGCCTGATTGATGTTCATGAATCCATTGGAAACCTGGAGAGACTCGTGTACTTGAATGTGAAGGATTGCAAGAATCTTAAGTTGCTTCCGAAGAACATGTGTTTGCTTAATTCACTTGAAACACTCATTTTATCTGGTTGCTCAAATCTTGATGAGTTTCCAGTGGAGATGATGAAGATGGAGTCTCTGAAAGTTCTTGAAATAGATGGAATTCCAATAGGTGAATTATGGCCAAAAAGAAGTTCAACTATCTTGAGTTCTTTTCCATGCTCCTTAGTAAAGTTGATTCTCAGTAGGTGCAATCTTTCTGAAGATGCCTTTCCTACGGATTTAAGTAATCTATCTTCATTGCGAAAACTAAAGATAGATGAGAATCCAATTTGCAGTCTGCCAGGTTTCATCAAAGGTTTGAGGAGGCTTGATAAACTCTCTTTTTGTAATTGTAAGAAGCTCGAATCGCTTGTGGGGTTGCCGAGAGTACACAAAAAGATGTATGTAACCGATTGCATATCATTGAAAAAAGTAACATATCAATCGTTTGAGGGGCTCCAACTAGAGGCCTTTGTGAGAAACAACAAAAACACAGTTGAGTGGGAGTACCTTTTCAAGTTAGAGTCTATTGATAGAGTTGATGTGGAGATGATCAAACTTTTGGGCTTGTGCAACTTGGGATCCATGCCACCCATTACAATGAACGCATTTCCATTCTCAAGCTATGGTTCAAAAGTGAGTCCTATCCAGGGACTGTATGAATGTGGTATATTCAGCACAAGTTTTGTTGGGAATGAGGTTCCAGGCCGGTTCAGCTATAAAAGTACCAAGTCCTCCATATCTTTTAGTGTCCCTTTACTCCCTTCTAGTCACACAATCCGAGGCTTGAACATCTTTGCTACCTATGCAAACAAGGAGAATTCTAAATATAATGATGATGGTAGTTATAAACGTCCAATGATAATCAAAGTGAGTAACAAGAGCAAGGGTCTGAAGTGGATCTATTGGCCATTATACTTTGGTATCCCAGGTGACGGAGAAGATATGATATGGTTGAGTCATTGGAAGATGGAGAACGAAACAATATTACAATGTGGAGATCAAGTGGTGGTTTCAGTAGTGGCCGCACCATATGAGTTGTTTCGGATAAAGGAGTTTGGTGTCGAGCTTATGCAAGAGCACCAGAATAATATGATGATAAGTACCCAACACAACACCAAATCAGATCCTAATTATCCATGTGTCATCGGTGGAGATTTGTCCATGTGGGAGCATATACCCGGAACATACTTACTTGGTATCCGTAAAGAATCATTTGAAGATGCTGATGACCATGAGCAGAGATGGTTGAATCGCCTCATCATGGACAATAATGAAGAAGACACAGACAAAGAAGAAGGCCAAGAGGATGAACCTGATTACACAATTGGAAGGACGAGGGATGCCAGTAACAATTGCGGCCTCAGAGGCTGGAAGGTGCTCATCACAGCTGCCGGCTTATTTTTCTCGCTTGCTCTAGTAGTTCGGTCCTCCATCTCCCGGAAAAAGAAGCGACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

1029

Amino Acids

117.32

Weight (kDa)

6.83

Isoelectric Point (pI)

42.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 41 - 212 5.9e-21 NB-ARC domain
AAA_22 PF13401 59 - 158 3.1e-07 AAA domain
WHD_ROQ1 PF23282 282 - 352 5.5e-19 Disease resistance protein Roq1-like, winged-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57630 AT1G72930 AT5G38344
fragaria_vesca FvH4_1g27020 FvH4_2g00931 FvH4_2g17330 FvH4_2g17330 FvH4_2g17340 FvH4_2g17350 FvH4_2g20690 FvH4_5g15301 FvH4_5g34194 FvH4_5g38530 FvH4_5g38740 FvH4_5g38740 FvH4_5g38740 FvH4_6g03800 FvH4_7g09791 FvH4_7g09800 FvH4_7g09800 FvH4_7g10510 FvH4_7g10520 FvH4_7g10520 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750
malus_domestica MD02G1217100.v1.1 MD02G1217200.v1.1 MD02G1217400.v1.1 MD02G1217600.v1.1 MD02G1264800.v1.1 MD02G1264900.v1.1 MD02G1302100.v1.1 MD04G1010700.v1.1 MD05G1006800.v1.1 MD05G1140100.v1.1 MD05G1140200.v1.1 MD05G1152200.v1.1 MD07G1073500.v1.1 MD07G1101700.v1.1 MD07G1102200.v1.1 MD07G1103200.v1.1 MD07G1112300.v1.1 MD08G1018200.v1.1 MD08G1018400.v1.1 MD08G1018800.v1.1 MD08G1019000.v1.1 MD08G1019100.v1.1 MD08G1019200.v1.1 MD08G1019300.v1.1 MD08G1019400.v1.1 MD08G1019600.v1.1 MD08G1019900.v1.1 MD08G1020000.v1.1 MD08G1020200.v1.1 MD08G1020500.v1.1 MD08G1020700.v1.1 MD08G1020800.v1.1 MD08G1040700.v1.1 MD11G1112400.v1.1 MD12G1068600.v1.1 MD12G1193200.v1.1 MD13G1050600.v1.1 MD15G1374900.v1.1 MD15G1375100.v1.1 MD15G1416500.v1.1 MD17G1072500.v1.1 MD17G1274200.v1.1 MD17G1274900.v1.1
prunus_persica Prupe.2G121000_v2.0.a1 Prupe.2G121000_v2.0.a1 Prupe.2G125800_v2.0.a1 Prupe.2G126000_v2.0.a1 Prupe.2G126100_v2.0.a1 Prupe.2G126200_v2.0.a1 Prupe.2G126300_v2.0.a1 Prupe.2G126400_v2.0.a1 Prupe.2G126500_v2.0.a1 Prupe.2G126600_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126800_v2.0.a1 Prupe.2G126900_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G135500_v2.0.a1 Prupe.2G135600_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.3G009800_v2.0.a1 Prupe.3G010200_v2.0.a1 Prupe.3G131000_v2.0.a1 Prupe.4G260800_v2.0.a1 Prupe.4G260900_v2.0.a1 Prupe.6G083100_v2.0.a1 Prupe.6G083200_v2.0.a1 Prupe.6G083400_v2.0.a1 Prupe.6G132100_v2.0.a1 Prupe.8G184900_v2.0.a1 Prupe.8G185200_v2.0.a1 Prupe.8G185300_v2.0.a1
pyrus_communis pycom02g17870 pycom02g17880 pycom02g19520 pycom02g22610 pycom02g22630 pycom02g22680 pycom05g13540 pycom05g14680 pycom07g04880 pycom07g04890 pycom07g05690 pycom07g05710 pycom07g05720 pycom07g05750 pycom07g05780 pycom07g06300 pycom07g08320 pycom07g08330 pycom07g08350 pycom07g08360 pycom07g08370 pycom07g08410 pycom07g08420 pycom07g08430 pycom07g08440 pycom07g08470 pycom07g08480 pycom07g08520 pycom07g08550 pycom07g08560 pycom07g08640 pycom07g08660 pycom07g08670 pycom07g08680 pycom07g08690 pycom07g08720 pycom07g08730 pycom07g08790 pycom07g08800 pycom07g08810 pycom07g08860 pycom07g08890 pycom07g09720 pycom08g01590 pycom08g01600 pycom08g01620 pycom08g01630 pycom08g01640 pycom10g12630 pycom15g16490 pycom17g07200 pycom17g07210 pycom17g07220 pycom17g11730 pycom17g11740 pycom17g27340 pycom17g27380
rosa_chinensis RchiOBHm_Chr1g0342571 RchiOBHm_Chr1g0346231 RchiOBHm_Chr1g0346831 RchiOBHm_Chr1g0346891 RchiOBHm_Chr1g0348311 RchiOBHm_Chr1g0348321 RchiOBHm_Chr1g0348331 RchiOBHm_Chr1g0348361 RchiOBHm_Chr1g0348371 RchiOBHm_Chr1g0348381 RchiOBHm_Chr1g0348401 RchiOBHm_Chr1g0348411 RchiOBHm_Chr1g0348421 RchiOBHm_Chr1g0348431 RchiOBHm_Chr2g0130881 RchiOBHm_Chr3g0487331 RchiOBHm_Chr5g0060371 RchiOBHm_Chr6g0246491 RchiOBHm_Chr6g0246871 RchiOBHm_Chr6g0250311 RchiOBHm_Chr6g0250781 RchiOBHm_Chr6g0251431 RchiOBHm_Chr6g0281871 RchiOBHm_Chr6g0281881 RchiOBHm_Chr6g0281931 RchiOBHm_Chr6g0281941 RchiOBHm_Chr6g0281951 RchiOBHm_Chr6g0281971 RchiOBHm_Chr6g0281981 RchiOBHm_Chr7g0240541 RchiOBHm_Chr7g0240631 RchiOBHm_Chr7g0240671
rosa_laevigata RLG00000000627 RLG00000000631 RLG00000000641 RLG00000000645 RLG00000000652 RLG00000000662 RLG00000000663 RLG00000000667 RLG00000000670 RLG00000000702 RLG00000001216 RLG00000001219 RLG00000007678 RLG00000012923 RLG00000012996 RLG00000013243 RLG00000017513 RLG00000017514 RLG00000020936 RLG00000022755 RLG00000023013 RLG00000028646 RLG00000028654 RLG00000028662 RLG00000028665 RLG00000028667 RLG00000028711 RLG00000028714 RLG00000028716 RLG00000028770 RLG00000028771 RLG00000028773 RLG00000028778 RLG00000028798 RLG00000028809 RLG00000028813 RLG00000029334 RLG00000030003 RLG00000033910 RLG00000034358 RLG00000035430
rosa_multiflora Rmu_co8031134.1_g000001 Rmu_co8092796.1_g000001 Rmu_co8130156.1_g000001 Rmu_co8325323.1_g000001 Rmu_co8424083.1_g000002 Rmu_sc0000008.1_g000003 Rmu_sc0000008.1_g000011 Rmu_sc0000008.1_g000015 Rmu_sc0000008.1_g000020 Rmu_sc0000091.1_g000015 Rmu_sc0000091.1_g000018 Rmu_sc0000091.1_g000029 Rmu_sc0000091.1_g000031 Rmu_sc0000391.1_g000004 Rmu_sc0001070.1_g000030 Rmu_sc0001293.1_g000016 Rmu_sc0001674.1_g000006 Rmu_sc0001731.1_g000002 Rmu_sc0001731.1_g000003 Rmu_sc0001731.1_g000005 Rmu_sc0001911.1_g000029 Rmu_sc0001913.1_g000038 Rmu_sc0001955.1_g000025 Rmu_sc0001992.1_g000022 Rmu_sc0001992.1_g000028 Rmu_sc0001992.1_g000031 Rmu_sc0002517.1_g000013 Rmu_sc0002517.1_g000017 Rmu_sc0002551.1_g000022 Rmu_sc0002551.1_g000029 Rmu_sc0002551.1_g000038 Rmu_sc0002705.1_g000015 Rmu_sc0002705.1_g000016 Rmu_sc0002882.1_g000055 Rmu_sc0003232.1_g000027 Rmu_sc0003363.1_g000037 Rmu_sc0003600.1_g000054 Rmu_sc0003918.1_g000011 Rmu_sc0004395.1_g000011 Rmu_sc0005071.1_g000004 Rmu_sc0005255.1_g000018 Rmu_sc0005327.1_g000004 Rmu_sc0005597.1_g000007 Rmu_sc0007060.1_g000007 Rmu_sc0007310.1_g000003 Rmu_sc0007383.1_g000014 Rmu_sc0007799.1_g000003 Rmu_sc0008477.1_g000016 Rmu_sc0010151.1_g000009 Rmu_sc0011217.1_g000005 Rmu_sc0016269.1_g000006 Rmu_sc0021495.1_g000001 Rmu_sc0027364.1_g000001 Rmu_sc0029432.1_g000001 Rmu_sc0041386.1_g000001 Rmu_ssc0000126.1_g000023 Rmu_ssc0000126.1_g000027
rosa_roxburghii Rroxscaffold_1G00006130 Rroxscaffold_1G00023320 Rroxscaffold_1G00038770 Rroxscaffold_2G00119800 Rroxscaffold_2G00121860 Rroxscaffold_3G00219780 Rroxscaffold_3G00219890 Rroxscaffold_4G00306740 Rroxscaffold_4G00306820 Rroxscaffold_4G00307000 Rroxscaffold_4G00307010 Rroxscaffold_4G00307020 Rroxscaffold_4G00308030 Rroxscaffold_4G00308070 Rroxscaffold_4G00308450 Rroxscaffold_4G00308460 Rroxscaffold_4G00315320 Rroxscaffold_5G00352470 Rroxscaffold_5G00371420 Rroxscaffold_6G00392300 Rroxscaffold_6G00394870 Rroxscaffold_6G00394890 Rroxscaffold_7G00186700 Rroxscaffold_7G00194980 Rroxscaffold_7G00216840
rosa_rugosa Rorug01G0076100 Rorug01G0128100 Rorug01G0149000.1 Rorug01G0149500.1 Rorug01G0180000 Rorug01G0180100 Rorug01G0182900 Rorug01G0184000 Rorug01G0184100 Rorug01G0184300 Rorug01G0184600 Rorug01G0184700 Rorug01G0184700 Rorug01G0184900 Rorug01G0185000 Rorug01G0185100 Rorug01G0189300 Rorug01G0194100 Rorug01G0194100 Rorug01G0194200 Rorug01G0194400 Rorug01G0194400 Rorug01G0194500 Rorug02G0090400 Rorug02G0090400 Rorug03G0233000 Rorug03G0233100 Rorug05G0178600 Rorug05G0178700 Rorug05G0579200 Rorug06G0144100 Rorug06G0144300 Rorug06G0144300 Rorug06G0179300 Rorug06G0208800 Rorug07G0323500 Rorug07G0337000
rosa_samantha Rh1AG046100 Rh1AG201400 Rh1AG201800 Rh1AG202100 Rh1AG202600 Rh1AG211500 Rh1AG211800 Rh1AG212200 Rh1AG212500 Rh1AG212600 Rh1AG214200 Rh1BG168000 Rh1BG168300 Rh1BG168500 Rh1BG177900 Rh1BG178200 Rh1BG178300 Rh1BG178800 Rh1BG178900 Rh1CG080900 Rh1CG183300 Rh1CG186300 Rh1CG186700 Rh1CG187000 Rh1CG187300 Rh1CG193400 Rh1CG195800 Rh1CG196000 Rh1CG196100 Rh1CG196400 Rh1CG196500 Rh1CG196800 Rh1CG198800 Rh1CG442600 Rh1DG086200 Rh1DG155400 Rh1DG156200 Rh1DG194000 Rh1DG194300 Rh1DG194900 Rh1DG197000 Rh1DG198800 Rh1DG199000 Rh1DG199200 Rh1DG202000 Rh1DG203900 Rh1DG207600 Rh1DG207900 Rh1DG208000 Rh1DG208500 Rh1DG208600 Rh1DG208700 Rh3CG339100 Rh5AG106500 Rh5AG264800 Rh5AG265300 Rh5CG302800 Rh5DG277900 Rh6AG257600 Rh6AG257700 Rh6BG260500 Rh6BG260700 Rh6CG259600 Rh6CG259700 Rh6DG252100 Rh7DG126900
rosa_wichuraiana Rw0G005780 Rw0G007540 Rw0G007550 Rw0G007560 Rw0G009390 Rw1G016900 Rw1G016930 Rw1G016940 Rw1G016970 Rw1G017860 Rw1G017890 Rw1G017900 Rw1G017910 Rw1G017920 Rw1G017960 Rw1G017970 Rw1G017980 Rw1G018150 Rw4G000830 Rw5G009290 Rw5G018950 Rw5G024850 Rw5G024870 Rw5G040460 Rw6G022290 Rw7G041020 Rw7G041200 Rw7G041360 Rw7G041450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 521, 2475
AatII GACGTC 1 cut(s) 1455
AccB1I GGYRCC 1 cut(s) 1086
AciI CCGC 2 cut(s) 2652, 2985
AclWI GGATC 8 cut(s) 169, 778, 1012, 1438, 2202, 2215, 2534, 2747
AcoI YGGCCR 3 cut(s) 1766, 2534, 2649
AcsI RAATTY 5 cut(s) 1288, 1325, 1424, 1746, 2446
AcuI CTGAAG 2 cut(s) 1866, 2540
AcyI GRCGYC 2 cut(s) 1087, 1452
AfiI CCNNNNNNNGG 8 cut(s) 174, 650, 1027, 2092, 2276, 2561, 2890, 3066
AflII CTTAAG 2 cut(s) 1399, 1613
AflIII ACRYGT 2 cut(s) 229, 1632
AjnI CCWGG 6 cut(s) 1152, 1569, 1927, 2274, 2329, 2554
AjuI GAANNNNNNNTTGG 2 cut(s) 1762, 1794
Alw21I GWGCWC 3 cut(s) 573, 2709, 3009
Alw26I GTCTC 4 cut(s) 63, 1193, 1570, 1725
Alw44I GTGCAC 1 cut(s) 569
AlwI GGATC 8 cut(s) 169, 778, 1012, 1438, 2202, 2215, 2534, 2747
AlwNI CAGNNNCTG 2 cut(s) 2281, 2997
AoxI GGCC 7 cut(s) 1766, 2094, 2332, 2534, 2649, 2926, 2986
ApaLI GTGCAC 1 cut(s) 569
ApeKI GCWGC 1 cut(s) 3017
ApoI RAATTY 5 cut(s) 1288, 1325, 1424, 1746, 2446
ArsI GACNNNNNNTTYG 2 cut(s) 114, 146
Asp700I GAANNNNTTC 3 cut(s) 857, 1041, 1518
AspLEI GCGC 1 cut(s) 1089
AspS9I GGNCC 3 cut(s) 451, 460, 3054
AsuC2I CCSGG 3 cut(s) 504, 2808, 3067
AsuHPI GGTGA 4 cut(s) 806, 988, 1769, 2570
AsuII TTCGAA 1 cut(s) 1104
AvaII GGWCC 3 cut(s) 451, 460, 3054
BaeGI GKGCMC 1 cut(s) 573
BaeI ACNNNNGTAYC 2 cut(s) 2533, 2566
BalI TGGCCA 2 cut(s) 1768, 2536
BamHI GGATCC 1 cut(s) 2207
BanI GGYRCC 1 cut(s) 1086
BanII GRGCYC 2 cut(s) 725, 2085
BarI GAAGNNNNNNTAC 4 cut(s) 354, 386, 1864, 1896
BauI CACGAG 1 cut(s) 1580
BbsI GAAGAC 3 cut(s) 141, 218, 2913
Bbv12I GWGCWC 3 cut(s) 573, 2709, 3009
BbvI GCAGC 1 cut(s) 3004
BceAI ACGGC 1 cut(s) 370
BcgI CGANNNNNNTGC 2 cut(s) 611, 645
BciT130I CCWGG 6 cut(s) 1154, 1571, 1929, 2276, 2331, 2556
BciVI GTATCC 3 cut(s) 171, 2561, 2837
BclI TGATCA 1 cut(s) 2178
BcnI CCSGG 3 cut(s) 504, 2808, 3067
BcoDI GTCTC 4 cut(s) 63, 1193, 1570, 1725
BfaI CTAG 7 cut(s) 420, 528, 648, 1508, 2090, 2394, 3044
BfoI RGCGCY 1 cut(s) 1090
BfrI CTTAAG 2 cut(s) 1399, 1613
BfuI GTATCC 3 cut(s) 171, 2561, 2837
BglI GCCNNNNNGGC 1 cut(s) 2994
BisI GCNGC 3 cut(s) 2652, 2986, 3018
BlsI GCNGC 3 cut(s) 2653, 2987, 3019
BmcAI AGTACT 2 cut(s) 477, 1110
Bme1390I CCNGG 9 cut(s) 504, 1154, 1571, 1929, 2276, 2331, 2556, 2808, 3067
Bme18I GGWCC 3 cut(s) 451, 460, 3054
BmgT120I GGNCC 3 cut(s) 451, 460, 3054
BmiI GGNNCC 4 cut(s) 1088, 2084, 2209, 2328
BmrFI CCNGG 9 cut(s) 504, 1154, 1571, 1929, 2276, 2331, 2556, 2808, 3067
BmsI GCATC 7 cut(s) 460, 959, 980, 1177, 1840, 2839, 2959
BpiI GAAGAC 3 cut(s) 141, 218, 2913
BpmI CTGGAG 1 cut(s) 1592
Bpu10I CCTNAGC 1 cut(s) 313
Bpu14I TTCGAA 1 cut(s) 1104
BpuEI CTTGAG 3 cut(s) 111, 1810, 2230
BpuMI CCSGG 3 cut(s) 504, 2808, 3067
BsaAI YACGTR 1 cut(s) 658
BsaBI GATNNNNATC 2 cut(s) 116, 1908
BsaHI GRCGYC 2 cut(s) 1087, 1452
BsaJI CCNNGG 4 cut(s) 1152, 2275, 2407, 2554
BsaWI WCCGGW 1 cut(s) 849
BsaXI ACNNNNNCTCC 2 cut(s) 2616, 2646
Bsc4I CCNNNNNNNGG 8 cut(s) 174, 650, 1027, 2092, 2276, 2561, 2890, 3066
Bse118I RCCGGY 2 cut(s) 2334, 3020
Bse1I ACTGG 5 cut(s) 186, 634, 1275, 1697, 2973
Bse3DI GCAATG 3 cut(s) 219, 867, 1883
Bse8I GATNNNNATC 2 cut(s) 116, 1908
BseBI CCWGG 6 cut(s) 1154, 1571, 1929, 2276, 2331, 2556
BseDI CCNNGG 4 cut(s) 1152, 2275, 2407, 2554
BseGI GGATG 8 cut(s) 640, 929, 995, 1236, 1279, 1283, 2941, 2974
BseJI GATNNNNATC 2 cut(s) 116, 1908
BseLI CCNNNNNNNGG 8 cut(s) 174, 650, 1027, 2092, 2276, 2561, 2890, 3066
BseMI GCAATG 3 cut(s) 219, 867, 1883
BseMII CTCAG 3 cut(s) 1103, 1840, 3004
BseNI ACTGG 5 cut(s) 186, 634, 1275, 1697, 2973
BseRI GAGGAG 1 cut(s) 1963
BseSI GKGCMC 1 cut(s) 573
BseXI GCAGC 1 cut(s) 3004
BshFI GGCC 7 cut(s) 1768, 2096, 2334, 2536, 2651, 2928, 2988
BshNI GGYRCC 1 cut(s) 1086
BsiHKAI GWGCWC 3 cut(s) 573, 2709, 3009
BsiSI CCGG 6 cut(s) 503, 850, 2335, 2808, 3021, 3067
BslFI GGGAC 3 cut(s) 402, 2292, 2363
BslI CCNNNNNNNGG 8 cut(s) 174, 650, 1027, 2092, 2276, 2561, 2890, 3066
BsmAI GTCTC 4 cut(s) 63, 1193, 1570, 1725
BsmFI GGGAC 3 cut(s) 402, 2292, 2363
BsnI GGCC 7 cut(s) 1768, 2096, 2334, 2536, 2651, 2928, 2988
Bsp119I TTCGAA 1 cut(s) 1104
Bsp1286I GDGCHC 5 cut(s) 573, 725, 2085, 2709, 3009
Bsp1407I TGTACA 1 cut(s) 679
BspACI CCGC 2 cut(s) 2652, 2985
BspANI GGCC 7 cut(s) 1768, 2096, 2334, 2536, 2651, 2928, 2988
BspCNI CTCAG 3 cut(s) 1104, 1839, 3003
BspHI TCATGA 1 cut(s) 1552
BspLI GGNNCC 4 cut(s) 1088, 2084, 2209, 2328
BspPI GGATC 8 cut(s) 169, 778, 1012, 1438, 2202, 2215, 2534, 2747
BspQI GCTCTTC 2 cut(s) 730, 1053
BspT104I TTCGAA 1 cut(s) 1104
BspT107I GGYRCC 1 cut(s) 1086
BspTI CTTAAG 2 cut(s) 1399, 1613
BsrDI GCAATG 3 cut(s) 219, 867, 1883
BsrFI RCCGGY 2 cut(s) 2334, 3020
BsrGI TGTACA 1 cut(s) 679
BsrI ACTGG 5 cut(s) 186, 634, 1275, 1697, 2973
BssAI RCCGGY 2 cut(s) 2334, 3020
BssECI CCNNGG 4 cut(s) 1152, 2275, 2407, 2554
BssNI GRCGYC 2 cut(s) 1087, 1452
BssSI CACGAG 1 cut(s) 1580
Bst2BI CACGAG 1 cut(s) 1580
Bst2UI CCWGG 6 cut(s) 1154, 1571, 1929, 2276, 2331, 2556
Bst4CI ACNGT 4 cut(s) 1204, 2122, 2283, 3084
Bst6I CTCTTC 4 cut(s) 418, 730, 1027, 1053
BstACI GRCGYC 2 cut(s) 1087, 1452
BstAFI CTTAAG 2 cut(s) 1399, 1613
BstAUI TGTACA 1 cut(s) 679
BstBAI YACGTR 1 cut(s) 658
BstBI TTCGAA 1 cut(s) 1104
BstC8I GCNNGC 3 cut(s) 624, 3022, 3039
BstDEI CTNAG 8 cut(s) 313, 392, 812, 1112, 1256, 1810, 1826, 2990
BstF5I GGATG 8 cut(s) 640, 929, 995, 1236, 1279, 1283, 2941, 2974
BstH2I RGCGCY 1 cut(s) 1090
BstHHI GCGC 1 cut(s) 1089
BstMAI GTCTC 4 cut(s) 63, 1193, 1570, 1725
BstMWI GCNNNNNNNGC 4 cut(s) 1993, 2340, 2432, 2994
BstNI CCWGG 6 cut(s) 1154, 1571, 1929, 2276, 2331, 2556
BstNSI RCATGY 4 cut(s) 199, 233, 626, 1636
BstSCI CCNGG 9 cut(s) 502, 1152, 1569, 1927, 2274, 2329, 2554, 2806, 3065
BstSLI GKGCMC 1 cut(s) 573
BstV1I GCAGC 1 cut(s) 3004
BstV2I GAAGAC 3 cut(s) 141, 218, 2913
BstX2I RGATCY 4 cut(s) 1443, 2207, 2526, 2752
BstXI CCANNNNNNTGG 1 cut(s) 23
BstYI RGATCY 4 cut(s) 1443, 2207, 2526, 2752
BsuI GTATCC 3 cut(s) 171, 2561, 2837
BsuRI GGCC 7 cut(s) 1768, 2096, 2334, 2536, 2651, 2928, 2988
BtsCI GGATG 8 cut(s) 640, 929, 995, 1236, 1279, 1283, 2941, 2974
BtsIMutI CAGTG 2 cut(s) 292, 1704
Cac8I GCNNGC 3 cut(s) 624, 3022, 3039
CaiI CAGNNNCTG 2 cut(s) 2281, 2997
CciI TCATGA 1 cut(s) 1552
CfoI GCGC 1 cut(s) 1089
Cfr10I RCCGGY 2 cut(s) 2334, 3020
Cfr13I GGNCC 3 cut(s) 451, 460, 3054
CspCI CAANNNNNGTGG 2 cut(s) 854, 889
DdeI CTNAG 8 cut(s) 313, 392, 812, 1112, 1256, 1810, 1826, 2990
DinI GGCGCC 1 cut(s) 1088
DraI TTTAAA 1 cut(s) 259
EaeI YGGCCR 3 cut(s) 1766, 2534, 2649
Eam1104I CTCTTC 4 cut(s) 418, 730, 1027, 1053
EarI CTCTTC 4 cut(s) 418, 730, 1027, 1053
Eco147I AGGCCT 1 cut(s) 2096
Eco24I GRGCYC 2 cut(s) 725, 2085
Eco47I GGWCC 3 cut(s) 451, 460, 3054
Eco57I CTGAAG 2 cut(s) 1866, 2540
EcoRI GAATTC 2 cut(s) 1746, 2446
EcoRII CCWGG 6 cut(s) 1152, 1569, 1927, 2274, 2329, 2554
EcoT22I ATGCAT 3 cut(s) 1011, 1170, 1222
EcoT38I GRGCYC 2 cut(s) 725, 2085
EgeI GGCGCC 1 cut(s) 1088
EheI GGCGCC 1 cut(s) 1088
FaqI GGGAC 3 cut(s) 402, 2292, 2363
FauNDI CATATG 1 cut(s) 2659
FbaI TGATCA 1 cut(s) 2178
Fnu4HI GCNGC 3 cut(s) 2652, 2986, 3018
FokI GGATG 8 cut(s) 627, 936, 1002, 1243, 1286, 1290, 2948, 2981
FriOI GRGCYC 2 cut(s) 725, 2085
Fsp4HI GCNGC 3 cut(s) 2652, 2986, 3018
FspBI CTAG 7 cut(s) 420, 528, 648, 1508, 2090, 2394, 3044
GlaI GCGC 1 cut(s) 1088
GluI GCNGC 3 cut(s) 2652, 2986, 3018
GsuI CTGGAG 1 cut(s) 1592
HaeII RGCGCY 1 cut(s) 1090
HaeIII GGCC 7 cut(s) 1768, 2096, 2334, 2536, 2651, 2928, 2988
HapII CCGG 6 cut(s) 503, 850, 2335, 2808, 3021, 3067
HhaI GCGC 1 cut(s) 1089
Hin1I GRCGYC 2 cut(s) 1087, 1452
Hin6I GCGC 1 cut(s) 1087
HinP1I GCGC 1 cut(s) 1087
HindIII AAGCTT 1 cut(s) 253
HpaII CCGG 6 cut(s) 503, 850, 2335, 2808, 3021, 3067
HphI GGTGA 4 cut(s) 806, 988, 1769, 2570
Hpy166II GTNNAC 8 cut(s) 235, 451, 571, 682, 833, 1130, 1585, 2017
Hpy8I GTNNAC 8 cut(s) 235, 451, 571, 682, 833, 1130, 1585, 2017
Hpy99I CGWCG 1 cut(s) 695
HpyAV CCTTC 7 cut(s) 882, 1117, 1591, 2400, 2918, 2952, 2995
HpyCH4III ACNGT 4 cut(s) 1204, 2122, 2283, 3084
HpyCH4IV ACGT 6 cut(s) 657, 742, 999, 1072, 1452, 2479
HpyF10VI GCNNNNNNNGC 4 cut(s) 1993, 2340, 2432, 2994
HpyF3I CTNAG 8 cut(s) 313, 392, 812, 1112, 1256, 1810, 1826, 2990
HpySE526I ACGT 6 cut(s) 657, 742, 999, 1072, 1452, 2479
Hsp92I GRCGYC 2 cut(s) 1087, 1452
HspAI GCGC 1 cut(s) 1087
KasI GGCGCC 1 cut(s) 1086
KroI GCCGGC 1 cut(s) 3020
KroNI GCCGGC 1 cut(s) 3022
Ksp22I TGATCA 1 cut(s) 2178
LguI GCTCTTC 2 cut(s) 730, 1053
LmnI GCTCC 3 cut(s) 1811, 2088, 2797
Lsp1109I GCAGC 1 cut(s) 3004
LweI GCATC 7 cut(s) 460, 959, 980, 1177, 1840, 2839, 2959
MaeI CTAG 7 cut(s) 420, 528, 648, 1508, 2090, 2394, 3044
MaeII ACGT 6 cut(s) 657, 742, 999, 1072, 1452, 2479
MfeI CAATTG 4 cut(s) 939, 981, 2952, 2980
MflI RGATCY 4 cut(s) 1443, 2207, 2526, 2752
MhlI GDGCHC 5 cut(s) 573, 725, 2085, 2709, 3009
MlsI TGGCCA 2 cut(s) 1768, 2536
MluNI TGGCCA 2 cut(s) 1768, 2536
Mly113I GGCGCC 1 cut(s) 1087
MlyI GAGTC 7 cut(s) 41, 608, 1572, 1727, 2159, 2275, 2593
MmeI TCCRAC 3 cut(s) 46, 559, 2110
Mox20I TGGCCA 2 cut(s) 1768, 2536
Mph1103I ATGCAT 3 cut(s) 1011, 1170, 1222
MroNI GCCGGC 1 cut(s) 3020
MroXI GAANNNNTTC 3 cut(s) 857, 1041, 1518
MscI TGGCCA 2 cut(s) 1768, 2536
MseI TTAA 9 cut(s) 57, 77, 258, 909, 1304, 1400, 1614, 1644, 1868
MslI CAYNNNNRTG 2 cut(s) 1464, 2225
Msp20I TGGCCA 2 cut(s) 1768, 2536
MspA1I CMGCKG 1 cut(s) 3017
MspCI CTTAAG 2 cut(s) 1399, 1613
MspI CCGG 6 cut(s) 503, 850, 2335, 2808, 3021, 3067
MspR9I CCNGG 9 cut(s) 504, 1154, 1571, 1929, 2276, 2331, 2556, 2808, 3067
MunI CAATTG 4 cut(s) 939, 981, 2952, 2980
MvaI CCWGG 6 cut(s) 1154, 1571, 1929, 2276, 2331, 2556
MwoI GCNNNNNNNGC 4 cut(s) 1993, 2340, 2432, 2994
NaeI GCCGGC 1 cut(s) 3022
NarI GGCGCC 1 cut(s) 1087
NciI CCSGG 3 cut(s) 504, 2808, 3067
NdeI CATATG 1 cut(s) 2659
NgoMIV GCCGGC 1 cut(s) 3020
NlaIV GGNNCC 4 cut(s) 1088, 2084, 2209, 2328
NmeAIII GCCGAG 1 cut(s) 2034
NmuCI GTSAC 4 cut(s) 976, 1022, 2396, 2558
NsiI ATGCAT 3 cut(s) 1011, 1170, 1222
NspI RCATGY 4 cut(s) 199, 233, 626, 1636
NspV TTCGAA 1 cut(s) 1104
PaeI GCATGC 1 cut(s) 626
PagI TCATGA 1 cut(s) 1552
PceI AGGCCT 1 cut(s) 2096
PciI ACATGT 2 cut(s) 229, 1632
PciSI GCTCTTC 2 cut(s) 730, 1053
PdiI GCCGGC 1 cut(s) 3022
PdmI GAANNNNTTC 3 cut(s) 857, 1041, 1518
PfoI TCCNGGA 2 cut(s) 502, 3065
PkrI GCNGC 3 cut(s) 2653, 2987, 3019
PleI GAGTC 7 cut(s) 40, 607, 1572, 1726, 2158, 2274, 2592
PluTI GGCGCC 1 cut(s) 1090
PpsI GAGTC 7 cut(s) 40, 607, 1572, 1726, 2158, 2274, 2592
Ppu21I YACGTR 1 cut(s) 658
PscI ACATGT 2 cut(s) 229, 1632
PsiI TTATAA 2 cut(s) 521, 2475
Psp6I CCWGG 6 cut(s) 1152, 1569, 1927, 2274, 2329, 2554
PspGI CCWGG 6 cut(s) 1152, 1569, 1927, 2274, 2329, 2554
PspN4I GGNNCC 4 cut(s) 1088, 2084, 2209, 2328
PspPI GGNCC 3 cut(s) 451, 460, 3054
PsrI GAACNNNNNNTAC 2 cut(s) 884, 916
PstNI CAGNNNCTG 2 cut(s) 2281, 2997
PsuI RGATCY 4 cut(s) 1443, 2207, 2526, 2752
PvuII CAGCTG 1 cut(s) 3017
RseI CAYNNNNRTG 2 cut(s) 1464, 2225
SapI GCTCTTC 2 cut(s) 730, 1053
SaqAI TTAA 9 cut(s) 57, 77, 258, 909, 1304, 1400, 1614, 1644, 1868
SatI GCNGC 3 cut(s) 2652, 2986, 3018
Sau96I GGNCC 3 cut(s) 451, 460, 3054
ScaI AGTACT 2 cut(s) 477, 1110
SchI GAGTC 7 cut(s) 41, 608, 1572, 1727, 2159, 2275, 2593
ScrFI CCNGG 9 cut(s) 504, 1154, 1571, 1929, 2276, 2331, 2556, 2808, 3067
SduI GDGCHC 5 cut(s) 573, 725, 2085, 2709, 3009
SfaNI GCATC 7 cut(s) 460, 959, 980, 1177, 1840, 2839, 2959
SfoI GGCGCC 1 cut(s) 1088
SfuI TTCGAA 1 cut(s) 1104
SinI GGWCC 3 cut(s) 451, 460, 3054
SmiMI CAYNNNNRTG 2 cut(s) 1464, 2225
SmlI CTYRAG 5 cut(s) 126, 1399, 1613, 1789, 2245
SmoI CTYRAG 5 cut(s) 126, 1399, 1613, 1789, 2245
SphI GCATGC 1 cut(s) 626
SseBI AGGCCT 1 cut(s) 2096
SsiI CCGC 2 cut(s) 2652, 2985
SspDI GGCGCC 1 cut(s) 1086
SspI AATATT 2 cut(s) 665, 2613
SspMI CTAG 7 cut(s) 420, 528, 648, 1508, 2090, 2394, 3044
StuI AGGCCT 1 cut(s) 2096
StyD4I CCNGG 9 cut(s) 502, 1152, 1569, 1927, 2274, 2329, 2554, 2806, 3065
TaaI ACNGT 4 cut(s) 1204, 2122, 2283, 3084
TaiI ACGT 6 cut(s) 660, 745, 1002, 1075, 1455, 2482
TaqI TCGA 8 cut(s) 45, 120, 132, 301, 918, 1104, 1989, 2691
TaqII GACCGA 1 cut(s) 3042
TatI WGTACW 5 cut(s) 475, 679, 1108, 1584, 2014
TauI GCSGC 2 cut(s) 2654, 2988
Tru1I TTAA 9 cut(s) 57, 77, 258, 909, 1304, 1400, 1614, 1644, 1868
Tru9I TTAA 9 cut(s) 57, 77, 258, 909, 1304, 1400, 1614, 1644, 1868
TscAI CASTG 2 cut(s) 292, 1704
TseFI GTSAC 4 cut(s) 976, 1022, 2396, 2558
TseI GCWGC 1 cut(s) 3017
Tsp45I GTSAC 4 cut(s) 976, 1022, 2396, 2558
TspGWI ACGGA 5 cut(s) 708, 1010, 1877, 2577, 2819
TspRI CASTG 2 cut(s) 292, 1704
Vha464I CTTAAG 2 cut(s) 1399, 1613
VneI GTGCAC 1 cut(s) 569
VpaK11BI GGWCC 3 cut(s) 451, 460, 3054
XapI RAATTY 5 cut(s) 1288, 1325, 1424, 1746, 2446
XbaI TCTAGA 2 cut(s) 419, 1507
XceI RCATGY 4 cut(s) 199, 233, 626, 1636
XcmI CCANNNNNNNNNTGG 1 cut(s) 1567
XmnI GAANNNNTTC 3 cut(s) 857, 1041, 1518
XspI CTAG 7 cut(s) 420, 528, 648, 1508, 2090, 2394, 3044
ZraI GACGTC 1 cut(s) 1453
ZrmI AGTACT 2 cut(s) 477, 1110
Zsp2I ATGCAT 3 cut(s) 1011, 1170, 1222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.