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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 293 |
| AccB1I | GGYRCC | 1 cut(s) | 279 |
| AccIII | TCCGGA | 1 cut(s) | 272 |
| AciI | CCGC | 1 cut(s) | 154 |
| AclWI | GGATC | 2 cut(s) | 295, 356 |
| AcvI | CACGTG | 1 cut(s) | 373 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 147 |
| AgsI | TTSAA | 2 cut(s) | 308, 445 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 134, 166 |
| AluBI | AGCT | 3 cut(s) | 23, 32, 292 |
| AluI | AGCT | 3 cut(s) | 23, 32, 292 |
| Alw21I | GWGCWC | 1 cut(s) | 498 |
| Alw26I | GTCTC | 2 cut(s) | 92, 159 |
| AlwI | GGATC | 2 cut(s) | 295, 356 |
| Aor13HI | TCCGGA | 1 cut(s) | 272 |
| AsuHPI | GGTGA | 1 cut(s) | 423 |
| AsuII | TTCGAA | 1 cut(s) | 254 |
| BanI | GGYRCC | 1 cut(s) | 279 |
| BbrPI | CACGTG | 1 cut(s) | 373 |
| BbsI | GAAGAC | 3 cut(s) | 198, 323, 340 |
| Bbv12I | GWGCWC | 1 cut(s) | 498 |
| BccI | CCATC | 7 cut(s) | 129, 167, 227, 270, 373, 444, 506 |
| BcoDI | GTCTC | 2 cut(s) | 92, 159 |
| BfaI | CTAG | 2 cut(s) | 209, 482 |
| BglII | AGATCT | 1 cut(s) | 478 |
| BmiI | GGNNCC | 2 cut(s) | 152, 281 |
| BpiI | GAAGAC | 3 cut(s) | 198, 323, 340 |
| Bpu14I | TTCGAA | 1 cut(s) | 254 |
| BpuEI | CTTGAG | 3 cut(s) | 9, 100, 453 |
| Bsa29I | ATCGAT | 1 cut(s) | 360 |
| BsaAI | YACGTR | 1 cut(s) | 373 |
| BsaBI | GATNNNNATC | 1 cut(s) | 360 |
| BsaWI | WCCGGW | 2 cut(s) | 272, 433 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 147 |
| Bse1I | ACTGG | 1 cut(s) | 344 |
| Bse8I | GATNNNNATC | 1 cut(s) | 360 |
| BseAI | TCCGGA | 1 cut(s) | 272 |
| BseCI | ATCGAT | 1 cut(s) | 360 |
| BseGI | GGATG | 3 cut(s) | 219, 281, 323 |
| BseJI | GATNNNNATC | 1 cut(s) | 360 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 147 |
| BseNI | ACTGG | 1 cut(s) | 344 |
| BseRI | GAGGAG | 2 cut(s) | 110, 201 |
| BshNI | GGYRCC | 1 cut(s) | 279 |
| BshVI | ATCGAT | 1 cut(s) | 360 |
| BsiHKAI | GWGCWC | 1 cut(s) | 498 |
| BsiSI | CCGG | 2 cut(s) | 273, 434 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 147 |
| BsmAI | GTCTC | 2 cut(s) | 92, 159 |
| BsmBI | CGTCTC | 1 cut(s) | 159 |
| Bsp119I | TTCGAA | 1 cut(s) | 254 |
| Bsp1286I | GDGCHC | 1 cut(s) | 498 |
| Bsp13I | TCCGGA | 1 cut(s) | 272 |
| Bsp143I | GATC | 3 cut(s) | 300, 361, 478 |
| BspACI | CCGC | 1 cut(s) | 154 |
| BspDI | ATCGAT | 1 cut(s) | 360 |
| BspEI | TCCGGA | 1 cut(s) | 272 |
| BspHI | TCATGA | 1 cut(s) | 297 |
| BspLI | GGNNCC | 2 cut(s) | 152, 281 |
| BspPI | GGATC | 2 cut(s) | 295, 356 |
| BspT104I | TTCGAA | 1 cut(s) | 254 |
| BspT107I | GGYRCC | 1 cut(s) | 279 |
| BsrI | ACTGG | 1 cut(s) | 344 |
| BssMI | GATC | 3 cut(s) | 300, 361, 478 |
| Bst4CI | ACNGT | 1 cut(s) | 228 |
| BstBAI | YACGTR | 1 cut(s) | 373 |
| BstBI | TTCGAA | 1 cut(s) | 254 |
| BstF5I | GGATG | 3 cut(s) | 219, 281, 323 |
| BstKTI | GATC | 3 cut(s) | 303, 364, 481 |
| BstMAI | GTCTC | 2 cut(s) | 92, 159 |
| BstMBI | GATC | 3 cut(s) | 300, 361, 478 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 29, 473, 482 |
| BstV2I | GAAGAC | 3 cut(s) | 198, 323, 340 |
| BstX2I | RGATCY | 1 cut(s) | 478 |
| BstYI | RGATCY | 1 cut(s) | 478 |
| Bsu15I | ATCGAT | 1 cut(s) | 360 |
| BsuTUI | ATCGAT | 1 cut(s) | 360 |
| BtsCI | GGATG | 3 cut(s) | 219, 281, 323 |
| BtsIMutI | CAGTG | 1 cut(s) | 121 |
| CciI | TCATGA | 1 cut(s) | 297 |
| ClaI | ATCGAT | 1 cut(s) | 360 |
| CviAII | CATG | 2 cut(s) | 298, 332 |
| CviJI | RGCY | 6 cut(s) | 23, 32, 134, 178, 218, 292 |
| CviKI_1 | RGCY | 6 cut(s) | 23, 32, 134, 178, 218, 292 |
| DpnI | GATC | 3 cut(s) | 302, 363, 480 |
| DpnII | GATC | 3 cut(s) | 300, 361, 478 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 293 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 293 |
| Eco32I | GATATC | 1 cut(s) | 358 |
| Eco72I | CACGTG | 1 cut(s) | 373 |
| EcoRV | GATATC | 1 cut(s) | 358 |
| Esp3I | CGTCTC | 1 cut(s) | 159 |
| FaeI | CATG | 2 cut(s) | 301, 335 |
| FaiI | YATR | 2 cut(s) | 299, 333 |
| FatI | CATG | 2 cut(s) | 297, 331 |
| FokI | GGATG | 3 cut(s) | 206, 288, 310 |
| FspBI | CTAG | 2 cut(s) | 209, 482 |
| HapII | CCGG | 2 cut(s) | 273, 434 |
| Hin1II | CATG | 2 cut(s) | 301, 335 |
| HindIII | AAGCTT | 1 cut(s) | 30 |
| HinfI | GANTC | 3 cut(s) | 47, 60, 100 |
| HpaII | CCGG | 2 cut(s) | 273, 434 |
| HphI | GGTGA | 1 cut(s) | 423 |
| Hpy188I | TCNGA | 3 cut(s) | 89, 164, 420 |
| Hpy188III | TCNNGA | 5 cut(s) | 26, 57, 79, 273, 298 |
| HpyAV | CCTTC | 1 cut(s) | 314 |
| HpyCH4III | ACNGT | 1 cut(s) | 228 |
| HpyCH4IV | ACGT | 3 cut(s) | 14, 72, 372 |
| HpyCH4V | TGCA | 2 cut(s) | 146, 476 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 29, 473, 482 |
| HpySE526I | ACGT | 3 cut(s) | 14, 72, 372 |
| Hsp92II | CATG | 2 cut(s) | 301, 335 |
| Kpn2I | TCCGGA | 1 cut(s) | 272 |
| Kzo9I | GATC | 3 cut(s) | 300, 361, 478 |
| LmnI | GCTCC | 1 cut(s) | 501 |
| LpnPI | CCDG | 9 cut(s) | 132, 196, 216, 286, 302, 357, 372, 447, 471 |
| MaeI | CTAG | 2 cut(s) | 209, 482 |
| MaeII | ACGT | 3 cut(s) | 14, 72, 372 |
| MaeIII | GTNAC | 1 cut(s) | 116 |
| MalI | GATC | 3 cut(s) | 302, 363, 480 |
| MboI | GATC | 3 cut(s) | 300, 361, 478 |
| MboII | GAAGA | 8 cut(s) | 27, 30, 42, 45, 203, 261, 328, 340 |
| MflI | RGATCY | 1 cut(s) | 478 |
| MhlI | GDGCHC | 1 cut(s) | 498 |
| MlyI | GAGTC | 1 cut(s) | 94 |
| MmeI | TCCRAC | 4 cut(s) | 66, 247, 351, 376 |
| MnlI | CCTC | 6 cut(s) | 83, 88, 179, 331, 369, 447 |
| MroI | TCCGGA | 1 cut(s) | 272 |
| MspI | CCGG | 2 cut(s) | 273, 434 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 29, 473, 482 |
| NdeII | GATC | 3 cut(s) | 300, 361, 478 |
| NlaIII | CATG | 2 cut(s) | 301, 335 |
| NlaIV | GGNNCC | 2 cut(s) | 152, 281 |
| NmuCI | GTSAC | 1 cut(s) | 116 |
| NspV | TTCGAA | 1 cut(s) | 254 |
| PagI | TCATGA | 1 cut(s) | 297 |
| PfeI | GAWTC | 2 cut(s) | 47, 60 |
| PleI | GAGTC | 1 cut(s) | 94 |
| PmaCI | CACGTG | 1 cut(s) | 373 |
| PmlI | CACGTG | 1 cut(s) | 373 |
| PpsI | GAGTC | 1 cut(s) | 94 |
| Ppu21I | YACGTR | 1 cut(s) | 373 |
| PspCI | CACGTG | 1 cut(s) | 373 |
| PspN4I | GGNNCC | 2 cut(s) | 152, 281 |
| PsuI | RGATCY | 1 cut(s) | 478 |
| Sau3AI | GATC | 3 cut(s) | 300, 361, 478 |
| SchI | GAGTC | 1 cut(s) | 94 |
| SduI | GDGCHC | 1 cut(s) | 498 |
| SetI | ASST | 7 cut(s) | 17, 25, 34, 75, 294, 323, 375 |
| SfuI | TTCGAA | 1 cut(s) | 254 |
| SmlI | CTYRAG | 3 cut(s) | 24, 79, 468 |
| SmoI | CTYRAG | 3 cut(s) | 24, 79, 468 |
| SsiI | CCGC | 1 cut(s) | 154 |
| SspMI | CTAG | 2 cut(s) | 209, 482 |
| TaaI | ACNGT | 1 cut(s) | 228 |
| TaiI | ACGT | 3 cut(s) | 17, 75, 375 |
| TaqI | TCGA | 3 cut(s) | 58, 254, 360 |
| TfiI | GAWTC | 2 cut(s) | 47, 60 |
| TscAI | CASTG | 1 cut(s) | 121 |
| TseFI | GTSAC | 1 cut(s) | 116 |
| Tsp45I | GTSAC | 1 cut(s) | 116 |
| TspRI | CASTG | 1 cut(s) | 121 |
| XspI | CTAG | 2 cut(s) | 209, 482 |