TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_ROQ1 | PF23282 | 6 - 57 | 2e-13 | Disease resistance protein Roq1-like, winged-helix domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 347 |
| AccB1I | GGYRCC | 1 cut(s) | 245 |
| AclWI | GGATC | 1 cut(s) | 173 |
| AcsI | RAATTY | 1 cut(s) | 301 |
| AgsI | TTSAA | 3 cut(s) | 224, 260, 306 |
| AjnI | CCWGG | 1 cut(s) | 111 |
| AluBI | AGCT | 1 cut(s) | 367 |
| AluI | AGCT | 1 cut(s) | 367 |
| AlwI | GGATC | 1 cut(s) | 173 |
| ApeKI | GCWGC | 1 cut(s) | 205 |
| ApoI | RAATTY | 1 cut(s) | 301 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 156 |
| AspLEI | GCGC | 1 cut(s) | 348 |
| AsuC2I | CCSGG | 1 cut(s) | 183 |
| BanI | GGYRCC | 1 cut(s) | 245 |
| BbvI | GCAGC | 1 cut(s) | 217 |
| BciT130I | CCWGG | 1 cut(s) | 113 |
| BcnI | CCSGG | 1 cut(s) | 183 |
| BisI | GCNGC | 1 cut(s) | 206 |
| BlsI | GCNGC | 1 cut(s) | 207 |
| Bme1390I | CCNGG | 2 cut(s) | 113, 183 |
| BmiI | GGNNCC | 1 cut(s) | 247 |
| BmrFI | CCNGG | 2 cut(s) | 113, 183 |
| BmsI | GCATC | 1 cut(s) | 333 |
| BpmI | CTGGAG | 1 cut(s) | 347 |
| BpuMI | CCSGG | 1 cut(s) | 183 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 342, 372 |
| BseBI | CCWGG | 1 cut(s) | 113 |
| BseGI | GGATG | 2 cut(s) | 181, 348 |
| BseMII | CTCAG | 1 cut(s) | 177 |
| BseRI | GAGGAG | 1 cut(s) | 350 |
| BseXI | GCAGC | 1 cut(s) | 217 |
| BshNI | GGYRCC | 1 cut(s) | 245 |
| BsiSI | CCGG | 1 cut(s) | 182 |
| BsmI | GAATGC | 1 cut(s) | 60 |
| Bsp143I | GATC | 1 cut(s) | 178 |
| BspCNI | CTCAG | 2 cut(s) | 176, 381 |
| BspLI | GGNNCC | 1 cut(s) | 247 |
| BspPI | GGATC | 1 cut(s) | 173 |
| BspT107I | GGYRCC | 1 cut(s) | 245 |
| BssMI | GATC | 1 cut(s) | 178 |
| Bst2UI | CCWGG | 1 cut(s) | 113 |
| BstDEI | CTNAG | 2 cut(s) | 163, 368 |
| BstF5I | GGATG | 2 cut(s) | 181, 348 |
| BstHHI | GCGC | 1 cut(s) | 348 |
| BstKTI | GATC | 1 cut(s) | 181 |
| BstMBI | GATC | 1 cut(s) | 178 |
| BstNI | CCWGG | 1 cut(s) | 113 |
| BstNSI | RCATGY | 1 cut(s) | 280 |
| BstSCI | CCNGG | 2 cut(s) | 111, 181 |
| BstV1I | GCAGC | 1 cut(s) | 217 |
| BtsCI | GGATG | 2 cut(s) | 181, 348 |
| CfoI | GCGC | 1 cut(s) | 348 |
| CsiI | ACCWGGT | 1 cut(s) | 111 |
| CviAII | CATG | 4 cut(s) | 125, 130, 277, 374 |
| CviJI | RGCY | 1 cut(s) | 367 |
| CviKI_1 | RGCY | 1 cut(s) | 367 |
| DdeI | CTNAG | 2 cut(s) | 163, 368 |
| DpnI | GATC | 1 cut(s) | 180 |
| DpnII | GATC | 1 cut(s) | 178 |
| EcoRII | CCWGG | 1 cut(s) | 111 |
| EcoT22I | ATGCAT | 1 cut(s) | 126 |
| FaeI | CATG | 4 cut(s) | 128, 133, 280, 377 |
| FaiI | YATR | 9 cut(s) | 126, 131, 143, 192, 202, 210, 272, 278, 375 |
| FatI | CATG | 4 cut(s) | 124, 129, 276, 373 |
| Fnu4HI | GCNGC | 1 cut(s) | 206 |
| FokI | GGATG | 2 cut(s) | 188, 355 |
| Fsp4HI | GCNGC | 1 cut(s) | 206 |
| FspI | TGCGCA | 1 cut(s) | 347 |
| GlaI | GCGC | 1 cut(s) | 347 |
| GluI | GCNGC | 1 cut(s) | 206 |
| GsuI | CTGGAG | 1 cut(s) | 347 |
| HapII | CCGG | 1 cut(s) | 182 |
| HhaI | GCGC | 1 cut(s) | 348 |
| Hin1II | CATG | 4 cut(s) | 128, 133, 280, 377 |
| Hin6I | GCGC | 1 cut(s) | 346 |
| HinP1I | GCGC | 1 cut(s) | 346 |
| HinfI | GANTC | 4 cut(s) | 67, 133, 167, 215 |
| HpaII | CCGG | 1 cut(s) | 182 |
| Hpy166II | GTNNAC | 1 cut(s) | 336 |
| Hpy188I | TCNGA | 3 cut(s) | 66, 166, 235 |
| Hpy188III | TCNNGA | 1 cut(s) | 137 |
| Hpy8I | GTNNAC | 1 cut(s) | 336 |
| HpyAV | CCTTC | 2 cut(s) | 141, 254 |
| HpyCH4V | TGCA | 4 cut(s) | 118, 124, 280, 286 |
| HpyF3I | CTNAG | 2 cut(s) | 163, 368 |
| Hsp92II | CATG | 4 cut(s) | 128, 133, 280, 377 |
| HspAI | GCGC | 1 cut(s) | 346 |
| Kzo9I | GATC | 1 cut(s) | 178 |
| LpnPI | CCDG | 6 cut(s) | 98, 125, 195, 263, 303, 377 |
| Lsp1109I | GCAGC | 1 cut(s) | 217 |
| LweI | GCATC | 1 cut(s) | 333 |
| MabI | ACCWGGT | 1 cut(s) | 111 |
| MaeIII | GTNAC | 2 cut(s) | 19, 88 |
| MalI | GATC | 1 cut(s) | 180 |
| MboI | GATC | 1 cut(s) | 178 |
| MboII | GAAGA | 1 cut(s) | 37 |
| MfeI | CAATTG | 1 cut(s) | 255 |
| MluCI | AATT | 2 cut(s) | 255, 301 |
| MnlI | CCTC | 2 cut(s) | 46, 371 |
| Mph1103I | ATGCAT | 1 cut(s) | 126 |
| MroXI | GAANNNNTTC | 1 cut(s) | 156 |
| MslI | CAYNNNNRTG | 1 cut(s) | 281 |
| MspI | CCGG | 1 cut(s) | 182 |
| MspR9I | CCNGG | 2 cut(s) | 113, 183 |
| MunI | CAATTG | 1 cut(s) | 255 |
| Mva1269I | GAATGC | 1 cut(s) | 60 |
| MvaI | CCWGG | 1 cut(s) | 113 |
| NciI | CCSGG | 1 cut(s) | 183 |
| NdeII | GATC | 1 cut(s) | 178 |
| NlaIII | CATG | 4 cut(s) | 128, 133, 280, 377 |
| NlaIV | GGNNCC | 1 cut(s) | 247 |
| NmuCI | GTSAC | 1 cut(s) | 19 |
| NsbI | TGCGCA | 1 cut(s) | 347 |
| NsiI | ATGCAT | 1 cut(s) | 126 |
| NspI | RCATGY | 1 cut(s) | 280 |
| PctI | GAATGC | 1 cut(s) | 60 |
| PdmI | GAANNNNTTC | 1 cut(s) | 156 |
| PfeI | GAWTC | 4 cut(s) | 67, 133, 167, 215 |
| PfoI | TCCNGGA | 1 cut(s) | 181 |
| PkrI | GCNGC | 1 cut(s) | 207 |
| Psp6I | CCWGG | 1 cut(s) | 111 |
| PspGI | CCWGG | 1 cut(s) | 111 |
| PspN4I | GGNNCC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 1 cut(s) | 281 |
| SatI | GCNGC | 1 cut(s) | 206 |
| Sau3AI | GATC | 1 cut(s) | 178 |
| ScrFI | CCNGG | 2 cut(s) | 113, 183 |
| SetI | ASST | 4 cut(s) | 57, 114, 315, 369 |
| SexAI | ACCWGGT | 1 cut(s) | 111 |
| SfaNI | GCATC | 1 cut(s) | 333 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 281 |
| Sse9I | AATT | 2 cut(s) | 255, 301 |
| SspI | AATATT | 1 cut(s) | 241 |
| StyD4I | CCNGG | 2 cut(s) | 111, 181 |
| TasI | AATT | 2 cut(s) | 255, 301 |
| TfiI | GAWTC | 4 cut(s) | 67, 133, 167, 215 |
| TseFI | GTSAC | 1 cut(s) | 19 |
| TseI | GCWGC | 1 cut(s) | 205 |
| Tsp45I | GTSAC | 1 cut(s) | 19 |
| TspDTI | ATGAA | 1 cut(s) | 287 |
| XapI | RAATTY | 1 cut(s) | 301 |
| XceI | RCATGY | 1 cut(s) | 280 |
| XmnI | GAANNNNTTC | 1 cut(s) | 156 |
| Zsp2I | ATGCAT | 1 cut(s) | 126 |