TMV resistance protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 205 - 375 | 1.5e-52 | TIR domain |
| TIR_2 | PF13676 | 207 - 304 | 1.7e-15 | TIR domain |
| AAA_16 | PF13191 | 382 - 502 | 3.4e-06 | AAA ATPase domain |
| NB-ARC | PF00931 | 386 - 557 | 1.6e-22 | NB-ARC domain |
| AAA_22 | PF13401 | 404 - 506 | 2.8e-07 | AAA domain |
| WHD_ROQ1 | PF23282 | 626 - 697 | 8.3e-15 | Disease resistance protein Roq1-like, winged-helix domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 381, 1556 |
| Acc16I | TGCGCA | 1 cut(s) | 2273 |
| Acc36I | ACCTGC | 1 cut(s) | 2315 |
| AccB1I | GGYRCC | 2 cut(s) | 825, 2124 |
| AccI | GTMKAC | 2 cut(s) | 906, 1213 |
| AciI | CCGC | 2 cut(s) | 398, 1055 |
| AclWI | GGATC | 4 cut(s) | 760, 841, 1204, 1503 |
| AcoI | YGGCCR | 1 cut(s) | 403 |
| AcsI | RAATTY | 3 cut(s) | 13, 345, 596 |
| AcuI | CTGAAG | 1 cut(s) | 616 |
| AcvI | CACGTG | 1 cut(s) | 919 |
| AcyI | GRCGYC | 1 cut(s) | 2125 |
| AfaI | GTAC | 5 cut(s) | 1137, 1716, 2148, 2167, 2304 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 921, 1685, 1885 |
| AflIII | ACRYGT | 2 cut(s) | 618, 1264 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 427 |
| AhlI | ACTAGT | 1 cut(s) | 1216 |
| AjiI | CACGTC | 1 cut(s) | 619 |
| AjnI | CCWGG | 3 cut(s) | 748, 1668, 2190 |
| Alw21I | GWGCWC | 1 cut(s) | 1608 |
| Alw26I | GTCTC | 3 cut(s) | 483, 705, 2231 |
| Alw44I | GTGCAC | 1 cut(s) | 1604 |
| AlwI | GGATC | 4 cut(s) | 760, 841, 1204, 1503 |
| AoxI | GGCC | 2 cut(s) | 403, 863 |
| ApaLI | GTGCAC | 1 cut(s) | 1604 |
| ApeKI | GCWGC | 1 cut(s) | 323 |
| ApoI | RAATTY | 3 cut(s) | 13, 345, 596 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1149, 1181 |
| AspLEI | GCGC | 2 cut(s) | 2127, 2274 |
| AspS9I | GGNCC | 4 cut(s) | 138, 874, 1486, 1672 |
| AsuC2I | CCSGG | 2 cut(s) | 1539, 1886 |
| AsuHPI | GGTGA | 3 cut(s) | 1000, 1841, 2023 |
| AsuII | TTCGAA | 2 cut(s) | 113, 2142 |
| AvaII | GGWCC | 4 cut(s) | 138, 874, 1486, 1672 |
| BaeGI | GKGCMC | 1 cut(s) | 1608 |
| BanI | GGYRCC | 2 cut(s) | 825, 2124 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1389, 1421 |
| BauI | CACGAG | 1 cut(s) | 557 |
| BbrPI | CACGTG | 1 cut(s) | 919 |
| BbsI | GAAGAC | 3 cut(s) | 648, 1253, 1752 |
| Bbv12I | GWGCWC | 1 cut(s) | 1608 |
| BbvI | GCAGC | 1 cut(s) | 335 |
| BccI | CCATC | 9 cut(s) | 816, 990, 1052, 1187, 1949, 2019, 2298, 2306, 2340 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1646, 1680 |
| BciT130I | CCWGG | 3 cut(s) | 750, 1670, 2192 |
| BcnI | CCSGG | 2 cut(s) | 1539, 1886 |
| BcoDI | GTCTC | 3 cut(s) | 483, 705, 2231 |
| BcuI | ACTAGT | 1 cut(s) | 1216 |
| BfaI | CTAG | 8 cut(s) | 320, 395, 507, 1028, 1217, 1455, 1514, 1563 |
| BfmI | CTRYAG | 2 cut(s) | 286, 755 |
| BfoI | RGCGCY | 1 cut(s) | 2128 |
| BfuAI | ACCTGC | 1 cut(s) | 2315 |
| BglII | AGATCT | 1 cut(s) | 1024 |
| BisI | GCNGC | 1 cut(s) | 324 |
| BlsI | GCNGC | 1 cut(s) | 325 |
| BmcAI | AGTACT | 1 cut(s) | 2148 |
| Bme1390I | CCNGG | 5 cut(s) | 750, 1539, 1670, 1886, 2192 |
| Bme18I | GGWCC | 4 cut(s) | 138, 874, 1486, 1672 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 427 |
| BmgBI | CACGTC | 1 cut(s) | 619 |
| BmgT120I | GGNCC | 4 cut(s) | 138, 874, 1486, 1672 |
| BmiI | GGNNCC | 4 cut(s) | 140, 577, 827, 2126 |
| BmrFI | CCNGG | 5 cut(s) | 750, 1539, 1670, 1886, 2192 |
| BmsI | GCATC | 6 cut(s) | 512, 821, 1495, 1994, 2215, 2259 |
| BpiI | GAAGAC | 3 cut(s) | 648, 1253, 1752 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2437 |
| Bpu14I | TTCGAA | 2 cut(s) | 113, 2142 |
| BpuEI | CTTGAG | 5 cut(s) | 555, 646, 703, 746, 1146 |
| BpuMI | CCSGG | 2 cut(s) | 1539, 1886 |
| Bsa29I | ATCGAT | 1 cut(s) | 2055 |
| BsaAI | YACGTR | 1 cut(s) | 919 |
| BsaHI | GRCGYC | 1 cut(s) | 2125 |
| BsaI | GGTCTC | 1 cut(s) | 2231 |
| BsaJI | CCNNGG | 2 cut(s) | 870, 2190 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2271, 2301 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 921, 1685, 1885 |
| Bse1I | ACTGG | 3 cut(s) | 517, 890, 2313 |
| Bse3DI | GCAATG | 4 cut(s) | 361, 498, 1254, 1902 |
| BseBI | CCWGG | 3 cut(s) | 750, 1670, 2192 |
| BseCI | ATCGAT | 1 cut(s) | 2055 |
| BseDI | CCNNGG | 2 cut(s) | 870, 2190 |
| BseGI | GGATG | 7 cut(s) | 815, 1001, 1063, 1964, 2030, 2274, 2317 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 921, 1685, 1885 |
| BseMI | GCAATG | 4 cut(s) | 361, 498, 1254, 1902 |
| BseMII | CTCAG | 1 cut(s) | 2141 |
| BseNI | ACTGG | 3 cut(s) | 517, 890, 2313 |
| BseRI | GAGGAG | 2 cut(s) | 571, 747 |
| BseSI | GKGCMC | 1 cut(s) | 1608 |
| BseXI | GCAGC | 1 cut(s) | 335 |
| Bsh1285I | CGRYCG | 2 cut(s) | 402, 2059 |
| BshFI | GGCC | 2 cut(s) | 405, 865 |
| BshNI | GGYRCC | 2 cut(s) | 825, 2124 |
| BshVI | ATCGAT | 1 cut(s) | 2055 |
| BsiEI | CGRYCG | 2 cut(s) | 402, 2059 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1608 |
| BsiSI | CCGG | 2 cut(s) | 1538, 1885 |
| BslFI | GGGAC | 3 cut(s) | 898, 1437, 1662 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 921, 1685, 1885 |
| BsmAI | GTCTC | 3 cut(s) | 483, 705, 2231 |
| BsmBI | CGTCTC | 1 cut(s) | 705 |
| BsmFI | GGGAC | 3 cut(s) | 898, 1437, 1662 |
| BsmI | GAATGC | 1 cut(s) | 1983 |
| BsnI | GGCC | 2 cut(s) | 405, 865 |
| Bso31I | GGTCTC | 1 cut(s) | 2231 |
| Bsp119I | TTCGAA | 2 cut(s) | 113, 2142 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1608 |
| Bsp1407I | TGTACA | 1 cut(s) | 1714 |
| Bsp143I | GATC | 9 cut(s) | 765, 846, 1024, 1196, 1495, 1525, 2052, 2056, 2389 |
| BspACI | CCGC | 2 cut(s) | 398, 1055 |
| BspANI | GGCC | 2 cut(s) | 405, 865 |
| BspCNI | CTCAG | 1 cut(s) | 2142 |
| BspDI | ATCGAT | 1 cut(s) | 2055 |
| BspHI | TCATGA | 1 cut(s) | 1836 |
| BspLI | GGNNCC | 4 cut(s) | 140, 577, 827, 2126 |
| BspMAI | CTGCAG | 1 cut(s) | 759 |
| BspMI | ACCTGC | 1 cut(s) | 2315 |
| BspPI | GGATC | 4 cut(s) | 760, 841, 1204, 1503 |
| BspT104I | TTCGAA | 2 cut(s) | 113, 2142 |
| BspT107I | GGYRCC | 2 cut(s) | 825, 2124 |
| BspTNI | GGTCTC | 1 cut(s) | 2231 |
| BsrDI | GCAATG | 4 cut(s) | 361, 498, 1254, 1902 |
| BsrGI | TGTACA | 1 cut(s) | 1714 |
| BsrI | ACTGG | 3 cut(s) | 517, 890, 2313 |
| BssECI | CCNNGG | 2 cut(s) | 870, 2190 |
| BssMI | GATC | 9 cut(s) | 765, 846, 1024, 1196, 1495, 1525, 2052, 2056, 2389 |
| BssNAI | GTATAC | 1 cut(s) | 1214 |
| BssNI | GRCGYC | 1 cut(s) | 2125 |
| BssSI | CACGAG | 1 cut(s) | 557 |
| Bst1107I | GTATAC | 1 cut(s) | 1214 |
| Bst2BI | CACGAG | 1 cut(s) | 557 |
| Bst2UI | CCWGG | 3 cut(s) | 750, 1670, 2192 |
| Bst4CI | ACNGT | 4 cut(s) | 1676, 1865, 2017, 2242 |
| Bst6I | CTCTTC | 4 cut(s) | 28, 115, 1453, 2065 |
| BstACI | GRCGYC | 1 cut(s) | 2125 |
| BstAUI | TGTACA | 1 cut(s) | 1714 |
| BstBAI | YACGTR | 1 cut(s) | 919 |
| BstBI | TTCGAA | 2 cut(s) | 113, 2142 |
| BstC8I | GCNNGC | 4 cut(s) | 132, 328, 1033, 1659 |
| BstDEI | CTNAG | 7 cut(s) | 1348, 1427, 1682, 1847, 2150, 2294, 2437 |
| BstEII | GGTNACC | 1 cut(s) | 605 |
| BstF5I | GGATG | 7 cut(s) | 815, 1001, 1063, 1964, 2030, 2274, 2317 |
| BstH2I | RGCGCY | 1 cut(s) | 2128 |
| BstHHI | GCGC | 2 cut(s) | 2127, 2274 |
| BstKTI | GATC | 9 cut(s) | 768, 849, 1027, 1199, 1498, 1528, 2055, 2059, 2392 |
| BstMAI | GTCTC | 3 cut(s) | 483, 705, 2231 |
| BstMBI | GATC | 9 cut(s) | 765, 846, 1024, 1196, 1495, 1525, 2052, 2056, 2389 |
| BstMCI | CGRYCG | 2 cut(s) | 402, 2059 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 332, 636, 754, 1028 |
| BstNI | CCWGG | 3 cut(s) | 750, 1670, 2192 |
| BstNSI | RCATGY | 3 cut(s) | 1234, 1268, 1661 |
| BstPI | GGTNACC | 1 cut(s) | 605 |
| BstSCI | CCNGG | 5 cut(s) | 748, 1537, 1668, 1884, 2190 |
| BstSFI | CTRYAG | 2 cut(s) | 286, 755 |
| BstSLI | GKGCMC | 1 cut(s) | 1608 |
| BstV1I | GCAGC | 1 cut(s) | 335 |
| BstV2I | GAAGAC | 3 cut(s) | 648, 1253, 1752 |
| BstX2I | RGATCY | 1 cut(s) | 1024 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 550 |
| BstYI | RGATCY | 1 cut(s) | 1024 |
| BstZ17I | GTATAC | 1 cut(s) | 1214 |
| Bsu15I | ATCGAT | 1 cut(s) | 2055 |
| BsuRI | GGCC | 2 cut(s) | 405, 865 |
| BsuTUI | ATCGAT | 1 cut(s) | 2055 |
| BtrI | CACGTC | 1 cut(s) | 619 |
| BtsCI | GGATG | 7 cut(s) | 815, 1001, 1063, 1964, 2030, 2274, 2317 |
| BveI | ACCTGC | 1 cut(s) | 2315 |
| Cac8I | GCNNGC | 4 cut(s) | 132, 328, 1033, 1659 |
| CciI | TCATGA | 1 cut(s) | 1836 |
| CfoI | GCGC | 2 cut(s) | 2127, 2274 |
| Cfr13I | GGNCC | 4 cut(s) | 138, 874, 1486, 1672 |
| ClaI | ATCGAT | 1 cut(s) | 2055 |
| Csp6I | GTAC | 5 cut(s) | 1136, 1715, 2147, 2166, 2303 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1889, 1924 |
| CviQI | GTAC | 5 cut(s) | 1136, 1715, 2147, 2166, 2303 |
| DdeI | CTNAG | 7 cut(s) | 1348, 1427, 1682, 1847, 2150, 2294, 2437 |
| DinI | GGCGCC | 1 cut(s) | 2126 |
| DpnI | GATC | 9 cut(s) | 767, 848, 1026, 1198, 1497, 1527, 2054, 2058, 2391 |
| DpnII | GATC | 9 cut(s) | 765, 846, 1024, 1196, 1495, 1525, 2052, 2056, 2389 |
| DraI | TTTAAA | 1 cut(s) | 454 |
| DriI | GACNNNNNGTC | 1 cut(s) | 427 |
| EaeI | YGGCCR | 1 cut(s) | 403 |
| Eam1104I | CTCTTC | 4 cut(s) | 28, 115, 1453, 2065 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 427 |
| EarI | CTCTTC | 4 cut(s) | 28, 115, 1453, 2065 |
| Eco147I | AGGCCT | 1 cut(s) | 865 |
| Eco31I | GGTCTC | 1 cut(s) | 2231 |
| Eco32I | GATATC | 1 cut(s) | 215 |
| Eco47I | GGWCC | 4 cut(s) | 138, 874, 1486, 1672 |
| Eco57I | CTGAAG | 1 cut(s) | 616 |
| Eco72I | CACGTG | 1 cut(s) | 919 |
| Eco91I | GGTNACC | 1 cut(s) | 605 |
| EcoO109I | RGGNCCY | 1 cut(s) | 138 |
| EcoO65I | GGTNACC | 1 cut(s) | 605 |
| EcoRI | GAATTC | 1 cut(s) | 13 |
| EcoRII | CCWGG | 3 cut(s) | 748, 1668, 2190 |
| EcoRV | GATATC | 1 cut(s) | 215 |
| EcoT22I | ATGCAT | 3 cut(s) | 361, 2208, 2260 |
| EgeI | GGCGCC | 1 cut(s) | 2126 |
| EheI | GGCGCC | 1 cut(s) | 2126 |
| Esp3I | CGTCTC | 1 cut(s) | 705 |
| FaqI | GGGAC | 3 cut(s) | 898, 1437, 1662 |
| FauNDI | CATATG | 1 cut(s) | 1491 |
| FblI | GTMKAC | 2 cut(s) | 906, 1213 |
| Fnu4HI | GCNGC | 1 cut(s) | 324 |
| FokI | GGATG | 7 cut(s) | 802, 1008, 1070, 1971, 2037, 2281, 2324 |
| Fsp4HI | GCNGC | 1 cut(s) | 324 |
| FspBI | CTAG | 8 cut(s) | 320, 395, 507, 1028, 1217, 1455, 1514, 1563 |
| FspI | TGCGCA | 1 cut(s) | 2273 |
| GlaI | GCGC | 2 cut(s) | 2126, 2273 |
| GluI | GCNGC | 1 cut(s) | 324 |
| HaeII | RGCGCY | 1 cut(s) | 2128 |
| HaeIII | GGCC | 2 cut(s) | 405, 865 |
| HapII | CCGG | 2 cut(s) | 1538, 1885 |
| HhaI | GCGC | 2 cut(s) | 2127, 2274 |
| Hin1I | GRCGYC | 1 cut(s) | 2125 |
| Hin6I | GCGC | 2 cut(s) | 2125, 2272 |
| HinP1I | GCGC | 2 cut(s) | 2125, 2272 |
| HincII | GTYRAC | 2 cut(s) | 907, 2020 |
| HindII | GTYRAC | 2 cut(s) | 907, 2020 |
| HindIII | AAGCTT | 1 cut(s) | 1288 |
| HpaII | CCGG | 2 cut(s) | 1538, 1885 |
| HphI | GGTGA | 3 cut(s) | 1000, 1841, 2023 |
| Hpy188I | TCNGA | 7 cut(s) | 212, 586, 635, 710, 874, 1378, 1705 |
| Hpy99I | CGWCG | 3 cut(s) | 620, 719, 1730 |
| HpyAV | CCTTC | 4 cut(s) | 985, 997, 1289, 1917 |
| HpyCH4III | ACNGT | 4 cut(s) | 1676, 1865, 2017, 2242 |
| HpyCH4IV | ACGT | 6 cut(s) | 120, 618, 704, 918, 2034, 2110 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 332, 636, 754, 1028 |
| HpyF3I | CTNAG | 7 cut(s) | 1348, 1427, 1682, 1847, 2150, 2294, 2437 |
| HpySE526I | ACGT | 6 cut(s) | 120, 618, 704, 918, 2034, 2110 |
| Hsp92I | GRCGYC | 1 cut(s) | 2125 |
| HspAI | GCGC | 2 cut(s) | 2125, 2272 |
| KasI | GGCGCC | 1 cut(s) | 2124 |
| Kzo9I | GATC | 9 cut(s) | 765, 846, 1024, 1196, 1495, 1525, 2052, 2056, 2389 |
| Lsp1109I | GCAGC | 1 cut(s) | 335 |
| LweI | GCATC | 6 cut(s) | 512, 821, 1495, 1994, 2215, 2259 |
| MaeI | CTAG | 8 cut(s) | 320, 395, 507, 1028, 1217, 1455, 1514, 1563 |
| MaeII | ACGT | 6 cut(s) | 120, 618, 704, 918, 2034, 2110 |
| MaeIII | GTNAC | 9 cut(s) | 559, 605, 774, 1185, 1594, 1688, 2011, 2060, 2468 |
| MalI | GATC | 9 cut(s) | 767, 848, 1026, 1198, 1497, 1527, 2054, 2058, 2391 |
| MboI | GATC | 9 cut(s) | 765, 846, 1024, 1196, 1495, 1525, 2052, 2056, 2389 |
| MfeI | CAATTG | 1 cut(s) | 1974 |
| MflI | RGATCY | 1 cut(s) | 1024 |
| MhlI | GDGCHC | 1 cut(s) | 1608 |
| Mly113I | GGCGCC | 1 cut(s) | 2125 |
| MlyI | GAGTC | 5 cut(s) | 304, 1076, 1161, 1643, 2108 |
| MmeI | TCCRAC | 1 cut(s) | 1594 |
| Mph1103I | ATGCAT | 3 cut(s) | 361, 2208, 2260 |
| MseI | TTAA | 9 cut(s) | 200, 254, 338, 413, 453, 471, 1092, 1112, 2342 |
| MslI | CAYNNNNRTG | 2 cut(s) | 548, 820 |
| MspA1I | CMGCKG | 1 cut(s) | 772 |
| MspI | CCGG | 2 cut(s) | 1538, 1885 |
| MspR9I | CCNGG | 5 cut(s) | 750, 1539, 1670, 1886, 2192 |
| MunI | CAATTG | 1 cut(s) | 1974 |
| Mva1269I | GAATGC | 1 cut(s) | 1983 |
| MvaI | CCWGG | 3 cut(s) | 750, 1670, 2192 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 332, 636, 754, 1028 |
| NarI | GGCGCC | 1 cut(s) | 2125 |
| NciI | CCSGG | 2 cut(s) | 1539, 1886 |
| NdeI | CATATG | 1 cut(s) | 1491 |
| NdeII | GATC | 9 cut(s) | 765, 846, 1024, 1196, 1495, 1525, 2052, 2056, 2389 |
| NlaIV | GGNNCC | 4 cut(s) | 140, 577, 827, 2126 |
| NmuCI | GTSAC | 4 cut(s) | 559, 774, 2011, 2060 |
| NsbI | TGCGCA | 1 cut(s) | 2273 |
| NsiI | ATGCAT | 3 cut(s) | 361, 2208, 2260 |
| NspI | RCATGY | 3 cut(s) | 1234, 1268, 1661 |
| NspV | TTCGAA | 2 cut(s) | 113, 2142 |
| PaeI | GCATGC | 1 cut(s) | 1661 |
| PagI | TCATGA | 1 cut(s) | 1836 |
| PceI | AGGCCT | 1 cut(s) | 865 |
| PciI | ACATGT | 1 cut(s) | 1264 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 607, 1672 |
| PctI | GAATGC | 1 cut(s) | 1983 |
| PfeI | GAWTC | 5 cut(s) | 587, 1157, 2090, 2135, 2375 |
| PfoI | TCCNGGA | 1 cut(s) | 1537 |
| PkrI | GCNGC | 1 cut(s) | 325 |
| Ple19I | CGATCG | 1 cut(s) | 2059 |
| PleI | GAGTC | 5 cut(s) | 304, 1075, 1160, 1642, 2107 |
| PluTI | GGCGCC | 1 cut(s) | 2128 |
| PmaCI | CACGTG | 1 cut(s) | 919 |
| PmlI | CACGTG | 1 cut(s) | 919 |
| PpsI | GAGTC | 5 cut(s) | 304, 1075, 1160, 1642, 2107 |
| Ppu21I | YACGTR | 1 cut(s) | 919 |
| PpuMI | RGGWCCY | 1 cut(s) | 138 |
| PscI | ACATGT | 1 cut(s) | 1264 |
| PsiI | TTATAA | 2 cut(s) | 381, 1556 |
| Psp5II | RGGWCCY | 1 cut(s) | 138 |
| Psp6I | CCWGG | 3 cut(s) | 748, 1668, 2190 |
| PspCI | CACGTG | 1 cut(s) | 919 |
| PspEI | GGTNACC | 1 cut(s) | 605 |
| PspGI | CCWGG | 3 cut(s) | 748, 1668, 2190 |
| PspN4I | GGNNCC | 4 cut(s) | 140, 577, 827, 2126 |
| PspPI | GGNCC | 4 cut(s) | 138, 874, 1486, 1672 |
| PspPPI | RGGWCCY | 1 cut(s) | 138 |
| PstI | CTGCAG | 1 cut(s) | 759 |
| PsuI | RGATCY | 1 cut(s) | 1024 |
| PvuI | CGATCG | 1 cut(s) | 2059 |
| PvuII | CAGCTG | 1 cut(s) | 772 |
| RsaI | GTAC | 5 cut(s) | 1137, 1716, 2148, 2167, 2304 |
| RsaNI | GTAC | 5 cut(s) | 1136, 1715, 2147, 2166, 2303 |
| RseI | CAYNNNNRTG | 2 cut(s) | 548, 820 |
| SalI | GTCGAC | 1 cut(s) | 905 |
| SaqAI | TTAA | 9 cut(s) | 200, 254, 338, 413, 453, 471, 1092, 1112, 2342 |
| SatI | GCNGC | 1 cut(s) | 324 |
| Sau3AI | GATC | 9 cut(s) | 765, 846, 1024, 1196, 1495, 1525, 2052, 2056, 2389 |
| Sau96I | GGNCC | 4 cut(s) | 138, 874, 1486, 1672 |
| ScaI | AGTACT | 1 cut(s) | 2148 |
| SchI | GAGTC | 5 cut(s) | 304, 1076, 1161, 1643, 2108 |
| ScrFI | CCNGG | 5 cut(s) | 750, 1539, 1670, 1886, 2192 |
| SduI | GDGCHC | 1 cut(s) | 1608 |
| SfaNI | GCATC | 6 cut(s) | 512, 821, 1495, 1994, 2215, 2259 |
| SfcI | CTRYAG | 2 cut(s) | 286, 755 |
| SfoI | GGCGCC | 1 cut(s) | 2126 |
| SfuI | TTCGAA | 2 cut(s) | 113, 2142 |
| SinI | GGWCC | 4 cut(s) | 138, 874, 1486, 1672 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 548, 820 |
| SmlI | CTYRAG | 5 cut(s) | 570, 625, 682, 725, 1161 |
| SmoI | CTYRAG | 5 cut(s) | 570, 625, 682, 725, 1161 |
| SpeI | ACTAGT | 1 cut(s) | 1216 |
| SphI | GCATGC | 1 cut(s) | 1661 |
| SseBI | AGGCCT | 1 cut(s) | 865 |
| SsiI | CCGC | 2 cut(s) | 398, 1055 |
| SspDI | GGCGCC | 1 cut(s) | 2124 |
| SspI | AATATT | 1 cut(s) | 1700 |
| SspMI | CTAG | 8 cut(s) | 320, 395, 507, 1028, 1217, 1455, 1514, 1563 |
| StuI | AGGCCT | 1 cut(s) | 865 |
| StyD4I | CCNGG | 5 cut(s) | 748, 1537, 1668, 1884, 2190 |
| TaaI | ACNGT | 4 cut(s) | 1676, 1865, 2017, 2242 |
| TaiI | ACGT | 6 cut(s) | 123, 621, 707, 921, 2037, 2113 |
| TaqI | TCGA | 8 cut(s) | 113, 126, 906, 1155, 1336, 1953, 2055, 2142 |
| TatI | WGTACW | 2 cut(s) | 1714, 2146 |
| TfiI | GAWTC | 5 cut(s) | 587, 1157, 2090, 2135, 2375 |
| Tru1I | TTAA | 9 cut(s) | 200, 254, 338, 413, 453, 471, 1092, 1112, 2342 |
| Tru9I | TTAA | 9 cut(s) | 200, 254, 338, 413, 453, 471, 1092, 1112, 2342 |
| TseFI | GTSAC | 4 cut(s) | 559, 774, 2011, 2060 |
| TseI | GCWGC | 1 cut(s) | 323 |
| Tsp45I | GTSAC | 4 cut(s) | 559, 774, 2011, 2060 |
| TspDTI | ATGAA | 8 cut(s) | 26, 63, 79, 735, 1297, 1535, 1853, 2478 |
| TspGWI | ACGGA | 2 cut(s) | 1743, 2037 |
| VneI | GTGCAC | 1 cut(s) | 1604 |
| VpaK11BI | GGWCC | 4 cut(s) | 138, 874, 1486, 1672 |
| XapI | RAATTY | 3 cut(s) | 13, 345, 596 |
| XbaI | TCTAGA | 1 cut(s) | 1454 |
| XceI | RCATGY | 3 cut(s) | 1234, 1268, 1661 |
| XmiI | GTMKAC | 2 cut(s) | 906, 1213 |
| XspI | CTAG | 8 cut(s) | 320, 395, 507, 1028, 1217, 1455, 1514, 1563 |
| ZrmI | AGTACT | 1 cut(s) | 2148 |
| Zsp2I | ATGCAT | 3 cut(s) | 361, 2208, 2260 |