Prupe.6G083200_v2.0.a1

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000036
Physical Location & Seq
Forward (+)
5624692 .. 5628784
4093 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G083200.1

Sequence Viewer

Length: 3168 bp
ATGGTCTTACAAAACCACGCTGATGGGTACGAGTCAAAGTTTATCATGCAAATTGTTAAAGTGATTGACAACAAACTCAGTCGCACGCCCTTCGCTATTGCACCCTACCCGATTGGAATTGATTCTCGAGTTGAAAATATTAATTCATGGTTACAGGATGGATCAACCGATGTTGGAATACTTTTAGTTAATGGAGTTGGGGGAATTGGAAAGACAACCCTTGCAAAATTTGCTTACAACATAAACTTCAGAAGATTTGAACGAAGTTGTTTTCTTGAAGATGTCAGGGAAATTTCAAACCAACCCAATGGTTTAGTTCACCTACAGATACAATTCCTTCACCACATTATGAGTGGAAGAGAAGTGAAAATACAGTGTGTCAGTGAGGGAATAAAAAAGATTAGAGATGCCATAATCTCTAAAACAATTCTTCTTGTTCTTGATGATGTTGATCATATGGACCAGATAGATGCAATATTTTTTATGCAAGATTGGTTTTGCCCTGGAAGTAAAATCATGATAACAACTAGGTGTGCAGGATTATTAAGGGGTCATCAAGTAGCTAAAAGCAAAGTTTATGATGCTGAAACTTTGGATGTGGATGAATCATTACAACTCTTCAGCTGGCATGCGTTTGGCCAGGACCACCCAATTGAGGGTTACATTAGTCTGTCGAAAAGGGTAAAGGATCGATGCGGAGGACTCCCGTTAGCTCTTCAAGTTTTGGGTTCGTCTCTATCAGGACGACATATAGATGTTTGGGAAAGTACATTGGAGAAATTAAAAACTATTCCAGACAATCAAATCATCAAAAAACTCAGAATAAGCTACGACGCTTTACAAGATAACCCTGATGACCAAAATTTATTCCTCCATATTGCATGTTTTTTTGTTGGACAAGGGAAAGATTATGTTGTTAGAATACTGGATGGATGTAATTTCTTCACAATTGTTGGCATTGAAAATCTTGTGAATAGATGTTTGGTAACAATTGATGATGAAAACAACGTGAAGATGCATCAAATGATTTGGGACATGGGAAGAGAAATTGTTCGGCTAGAATCAAAGGCACCTGGAAAACGTAGTAGATTATGGCGTGATAAGGATTCTTTCGATGTATTGAAGGAAAAGAGTGGTACAGAAACAATTGAAGGTCTTGCCTTGAACATGCGTATGCTCTCAGTAAACACTCCTTCTGGCAATACGAATGAGGTAGTCTTGGAAACTAACGCATTTTCAAGGATGTCCAAACTAGAACTACTTCAGCTTTGTCATTTACGACTCAATGGATGTTATGAGGAATTTCCAAAAGGATTAAGATGGTTGTGTTGGCTTGAATTTCCATCGAAATCATTACCTAGTGAAATTCCTTTGGAGTGCTTGGTTTATCTTGAAATGCATCATAGTAACTTGAGACAAGTCTTTAACCGGAAAAAAAACTTGATACAAGTTTTAAAGAAGGGAAGAAAGCACCTTCCCTCACTGAAGACCCTTGATCTAAGTCATTCTCATAGCCTTACTGAAATCGGTAACTTCTCACTGGCCCCCAACTTAGAAAGACTGATTCTTAAAGATTGTGCGAGCTTGGTTGATGTTCATGAATCCATTGGAAACCTAAAGAGACTCAATTACTTGAATATGAAAGATTGCAAAAAGATTAGGAAACTTCCAAAGAATTTATTTATGCTAAAATCAGTTGATACACTTATTGTATCTGGATGCTCAAGTCTAAATGAGTTTCCGAAGGAGCTGAGGAACATGGAATCTCTTAAAGTGCTAAAGGTAACTCAAGTTCTGACCACCACTGGAAACGTCAAATCATGCCTGAGGAGAAATCCAGAAACTTTTTGGGCTTCTTTACCAAGTAGTTTAACACAATTAAAGCTCAAGAGTTGCAATCTTTCTGATGAGGCTTTTCCCAAAGATATTGGTAACCTACCCTCATTAGAACTATTAGATCTAAGCGACAATCCAATCTCTGGCCTACCAGATTGCATCCGAGGTGTTACACGACTTGATCAACTTCTTTTTTCAAATTGCAAGAGGCTCAAAACGCTTGTAGGGCTACCAAGGGCAAGATATTTTGGTGTGTTTGATTGTGCATTGTTGGAAAAAGTAACATTTCAATCAAGTTTGTTCGGATTCACACCGTTTGAAGTGCTTAGCATTAGTAACCCGAAGTTAATTGAGATTGAATACATGTACAAGTTAGAACCCCTTGGAAATTGTGATGTAGAAATGCTCGATCTTTTGGGTTTGTCCAAGTACTTGGAATCCATGGAAACCGTTTTGATGATCTTCCCATGTAGGATCGCAGTGGAGTCGTGCCGTGCAGTTGAGAGTACGAAGCTGGATTGGATCAGAAGATATCCCATCCAGGGACTTTATGAATCTGGTATATTCAGCACATTTCTTCCTGGGAATGTGGTGCCAGGCCACTTCAGCTATACAAGTAAAAAGTCTTGGTCAATATCTTTTAGTGTGCCTTCTTCTACTTCTACTTTCAGGATTCGAGGTTTGAATGTCTTCTCTATGTATACATGTTCTGGTAGTGGTTCTTATGCTGGTTACAGTTGTGAGATAATTAGTCCAATAATAATCAAAGTTAGCAACAAAAGCACGGGAATGAAGTGGATCTATGACCCATCATGCTTCGGTATTCCAGATCCTGGAGAAGACATGATATTCTTAAGCCATTGGAAGATGGGGAATCAATTATTGAAAGGTGGCGACCAAGTCACAGTTTCCATGTTCATGAGATCTGTCTTTCAGCTGAAGGAGTGGGGCGTCCAGCTTGTGCACGAGCAAGATCAAGAGAATATCAGGATGATGAGGACCCAACATGACAATGATGATTATGAGTGTCCAGTTTCTTTTCCATGTGTCATTTTTGGACGTTCGCCAGAATTCGAGGTGATGTCAAGAACATACTTCCTGTCGCATGGACCACAATCAAGGAGAGCACTGACGTTTACTCGTTGGAGGGATTCGGTTTTGTTTAATGACATATTTGGGGACTCTGATCAACAAGAGGAACAAGCACTGCCGCTTGCAACAACAATGAGGGACGCCGGGGACAATAGATACTTTGTGTTTTCCATGTTGGCGGTAGATGTCCTATACGACAATGTAGTTTTACGCAGTTGCCTTTTTGGAACTCAGTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

1056

Amino Acids

119.89

Weight (kDa)

7.25

Isoelectric Point (pI)

43.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57630 AT1G72930 AT5G38344
fragaria_vesca FvH4_1g27020 FvH4_2g00931 FvH4_2g17330 FvH4_2g17330 FvH4_2g17340 FvH4_2g17350 FvH4_2g20690 FvH4_5g15301 FvH4_5g34194 FvH4_5g38530 FvH4_5g38740 FvH4_5g38740 FvH4_5g38740 FvH4_6g03800 FvH4_7g09791 FvH4_7g09800 FvH4_7g09800 FvH4_7g10510 FvH4_7g10520 FvH4_7g10520 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750
malus_domestica MD02G1217100.v1.1 MD02G1217200.v1.1 MD02G1217400.v1.1 MD02G1217600.v1.1 MD02G1264800.v1.1 MD02G1264900.v1.1 MD02G1302100.v1.1 MD04G1010700.v1.1 MD05G1006800.v1.1 MD05G1140100.v1.1 MD05G1140200.v1.1 MD05G1152200.v1.1 MD07G1073500.v1.1 MD07G1101700.v1.1 MD07G1102200.v1.1 MD07G1103200.v1.1 MD07G1112300.v1.1 MD08G1018200.v1.1 MD08G1018400.v1.1 MD08G1018800.v1.1 MD08G1019000.v1.1 MD08G1019100.v1.1 MD08G1019200.v1.1 MD08G1019300.v1.1 MD08G1019400.v1.1 MD08G1019600.v1.1 MD08G1019900.v1.1 MD08G1020000.v1.1 MD08G1020200.v1.1 MD08G1020500.v1.1 MD08G1020700.v1.1 MD08G1020800.v1.1 MD08G1040700.v1.1 MD11G1112400.v1.1 MD12G1068600.v1.1 MD12G1193200.v1.1 MD13G1050600.v1.1 MD15G1374900.v1.1 MD15G1375100.v1.1 MD15G1416500.v1.1 MD17G1072500.v1.1 MD17G1274200.v1.1 MD17G1274900.v1.1
prunus_persica Prupe.2G121000_v2.0.a1 Prupe.2G121000_v2.0.a1 Prupe.2G125800_v2.0.a1 Prupe.2G126000_v2.0.a1 Prupe.2G126100_v2.0.a1 Prupe.2G126200_v2.0.a1 Prupe.2G126300_v2.0.a1 Prupe.2G126400_v2.0.a1 Prupe.2G126500_v2.0.a1 Prupe.2G126600_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126800_v2.0.a1 Prupe.2G126900_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G135500_v2.0.a1 Prupe.2G135600_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.3G009800_v2.0.a1 Prupe.3G010200_v2.0.a1 Prupe.3G131000_v2.0.a1 Prupe.4G260800_v2.0.a1 Prupe.4G260900_v2.0.a1 Prupe.6G083100_v2.0.a1 Prupe.6G083200_v2.0.a1 Prupe.6G083400_v2.0.a1 Prupe.6G132100_v2.0.a1 Prupe.8G184900_v2.0.a1 Prupe.8G185200_v2.0.a1 Prupe.8G185300_v2.0.a1
pyrus_communis pycom02g17870 pycom02g17880 pycom02g19520 pycom02g22610 pycom02g22630 pycom02g22680 pycom05g13540 pycom05g14680 pycom07g04880 pycom07g04890 pycom07g05690 pycom07g05710 pycom07g05720 pycom07g05750 pycom07g05780 pycom07g06300 pycom07g08320 pycom07g08330 pycom07g08350 pycom07g08360 pycom07g08370 pycom07g08410 pycom07g08420 pycom07g08430 pycom07g08440 pycom07g08470 pycom07g08480 pycom07g08520 pycom07g08550 pycom07g08560 pycom07g08640 pycom07g08660 pycom07g08670 pycom07g08680 pycom07g08690 pycom07g08720 pycom07g08730 pycom07g08790 pycom07g08800 pycom07g08810 pycom07g08860 pycom07g08890 pycom07g09720 pycom08g01590 pycom08g01600 pycom08g01620 pycom08g01630 pycom08g01640 pycom10g12630 pycom15g16490 pycom17g07200 pycom17g07210 pycom17g07220 pycom17g11730 pycom17g11740 pycom17g27340 pycom17g27380
rosa_chinensis RchiOBHm_Chr1g0342571 RchiOBHm_Chr1g0346231 RchiOBHm_Chr1g0346831 RchiOBHm_Chr1g0346891 RchiOBHm_Chr1g0348311 RchiOBHm_Chr1g0348321 RchiOBHm_Chr1g0348331 RchiOBHm_Chr1g0348361 RchiOBHm_Chr1g0348371 RchiOBHm_Chr1g0348381 RchiOBHm_Chr1g0348401 RchiOBHm_Chr1g0348411 RchiOBHm_Chr1g0348421 RchiOBHm_Chr1g0348431 RchiOBHm_Chr2g0130881 RchiOBHm_Chr3g0487331 RchiOBHm_Chr5g0060371 RchiOBHm_Chr6g0246491 RchiOBHm_Chr6g0246871 RchiOBHm_Chr6g0250311 RchiOBHm_Chr6g0250781 RchiOBHm_Chr6g0251431 RchiOBHm_Chr6g0281871 RchiOBHm_Chr6g0281881 RchiOBHm_Chr6g0281931 RchiOBHm_Chr6g0281941 RchiOBHm_Chr6g0281951 RchiOBHm_Chr6g0281971 RchiOBHm_Chr6g0281981 RchiOBHm_Chr7g0240541 RchiOBHm_Chr7g0240631 RchiOBHm_Chr7g0240671
rosa_laevigata RLG00000000627 RLG00000000631 RLG00000000641 RLG00000000645 RLG00000000652 RLG00000000662 RLG00000000663 RLG00000000667 RLG00000000670 RLG00000000702 RLG00000001216 RLG00000001219 RLG00000007678 RLG00000012923 RLG00000012996 RLG00000013243 RLG00000017513 RLG00000017514 RLG00000020936 RLG00000022755 RLG00000023013 RLG00000028646 RLG00000028654 RLG00000028662 RLG00000028665 RLG00000028667 RLG00000028711 RLG00000028714 RLG00000028716 RLG00000028770 RLG00000028771 RLG00000028773 RLG00000028778 RLG00000028798 RLG00000028809 RLG00000028813 RLG00000029334 RLG00000030003 RLG00000033910 RLG00000034358 RLG00000035430
rosa_multiflora Rmu_co8031134.1_g000001 Rmu_co8092796.1_g000001 Rmu_co8130156.1_g000001 Rmu_co8325323.1_g000001 Rmu_co8424083.1_g000002 Rmu_sc0000008.1_g000003 Rmu_sc0000008.1_g000011 Rmu_sc0000008.1_g000015 Rmu_sc0000008.1_g000020 Rmu_sc0000091.1_g000015 Rmu_sc0000091.1_g000018 Rmu_sc0000091.1_g000029 Rmu_sc0000091.1_g000031 Rmu_sc0000391.1_g000004 Rmu_sc0001070.1_g000030 Rmu_sc0001293.1_g000016 Rmu_sc0001674.1_g000006 Rmu_sc0001731.1_g000002 Rmu_sc0001731.1_g000003 Rmu_sc0001731.1_g000005 Rmu_sc0001911.1_g000029 Rmu_sc0001913.1_g000038 Rmu_sc0001955.1_g000025 Rmu_sc0001992.1_g000022 Rmu_sc0001992.1_g000028 Rmu_sc0001992.1_g000031 Rmu_sc0002517.1_g000013 Rmu_sc0002517.1_g000017 Rmu_sc0002551.1_g000022 Rmu_sc0002551.1_g000029 Rmu_sc0002551.1_g000038 Rmu_sc0002705.1_g000015 Rmu_sc0002705.1_g000016 Rmu_sc0002882.1_g000055 Rmu_sc0003232.1_g000027 Rmu_sc0003363.1_g000037 Rmu_sc0003600.1_g000054 Rmu_sc0003918.1_g000011 Rmu_sc0004395.1_g000011 Rmu_sc0005071.1_g000004 Rmu_sc0005255.1_g000018 Rmu_sc0005327.1_g000004 Rmu_sc0005597.1_g000007 Rmu_sc0007060.1_g000007 Rmu_sc0007310.1_g000003 Rmu_sc0007383.1_g000014 Rmu_sc0007799.1_g000003 Rmu_sc0008477.1_g000016 Rmu_sc0010151.1_g000009 Rmu_sc0011217.1_g000005 Rmu_sc0016269.1_g000006 Rmu_sc0021495.1_g000001 Rmu_sc0027364.1_g000001 Rmu_sc0029432.1_g000001 Rmu_sc0041386.1_g000001 Rmu_ssc0000126.1_g000023 Rmu_ssc0000126.1_g000027
rosa_roxburghii Rroxscaffold_1G00006130 Rroxscaffold_1G00023320 Rroxscaffold_1G00038770 Rroxscaffold_2G00119800 Rroxscaffold_2G00121860 Rroxscaffold_3G00219780 Rroxscaffold_3G00219890 Rroxscaffold_4G00306740 Rroxscaffold_4G00306820 Rroxscaffold_4G00307000 Rroxscaffold_4G00307010 Rroxscaffold_4G00307020 Rroxscaffold_4G00308030 Rroxscaffold_4G00308070 Rroxscaffold_4G00308450 Rroxscaffold_4G00308460 Rroxscaffold_4G00315320 Rroxscaffold_5G00352470 Rroxscaffold_5G00371420 Rroxscaffold_6G00392300 Rroxscaffold_6G00394870 Rroxscaffold_6G00394890 Rroxscaffold_7G00186700 Rroxscaffold_7G00194980 Rroxscaffold_7G00216840
rosa_rugosa Rorug01G0076100 Rorug01G0128100 Rorug01G0149000.1 Rorug01G0149500.1 Rorug01G0180000 Rorug01G0180100 Rorug01G0182900 Rorug01G0184000 Rorug01G0184100 Rorug01G0184300 Rorug01G0184600 Rorug01G0184700 Rorug01G0184700 Rorug01G0184900 Rorug01G0185000 Rorug01G0185100 Rorug01G0189300 Rorug01G0194100 Rorug01G0194100 Rorug01G0194200 Rorug01G0194400 Rorug01G0194400 Rorug01G0194500 Rorug02G0090400 Rorug02G0090400 Rorug03G0233000 Rorug03G0233100 Rorug05G0178600 Rorug05G0178700 Rorug05G0579200 Rorug06G0144100 Rorug06G0144300 Rorug06G0144300 Rorug06G0179300 Rorug06G0208800 Rorug07G0323500 Rorug07G0337000
rosa_samantha Rh1AG046100 Rh1AG201400 Rh1AG201800 Rh1AG202100 Rh1AG202600 Rh1AG211500 Rh1AG211800 Rh1AG212200 Rh1AG212500 Rh1AG212600 Rh1AG214200 Rh1BG168000 Rh1BG168300 Rh1BG168500 Rh1BG177900 Rh1BG178200 Rh1BG178300 Rh1BG178800 Rh1BG178900 Rh1CG080900 Rh1CG183300 Rh1CG186300 Rh1CG186700 Rh1CG187000 Rh1CG187300 Rh1CG193400 Rh1CG195800 Rh1CG196000 Rh1CG196100 Rh1CG196400 Rh1CG196500 Rh1CG196800 Rh1CG198800 Rh1CG442600 Rh1DG086200 Rh1DG155400 Rh1DG156200 Rh1DG194000 Rh1DG194300 Rh1DG194900 Rh1DG197000 Rh1DG198800 Rh1DG199000 Rh1DG199200 Rh1DG202000 Rh1DG203900 Rh1DG207600 Rh1DG207900 Rh1DG208000 Rh1DG208500 Rh1DG208600 Rh1DG208700 Rh3CG339100 Rh5AG106500 Rh5AG264800 Rh5AG265300 Rh5CG302800 Rh5DG277900 Rh6AG257600 Rh6AG257700 Rh6BG260500 Rh6BG260700 Rh6CG259600 Rh6CG259700 Rh6DG252100 Rh7DG126900
rosa_wichuraiana Rw0G005780 Rw0G007540 Rw0G007550 Rw0G007560 Rw0G009390 Rw1G016900 Rw1G016930 Rw1G016940 Rw1G016970 Rw1G017860 Rw1G017890 Rw1G017900 Rw1G017910 Rw1G017920 Rw1G017960 Rw1G017970 Rw1G017980 Rw1G018150 Rw4G000830 Rw5G009290 Rw5G018950 Rw5G024850 Rw5G024870 Rw5G040460 Rw6G022290 Rw7G041020 Rw7G041200 Rw7G041360 Rw7G041450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1069, 2428
AccB7I CCANNNNNTGG 2 cut(s) 1979, 2669
AccI GTMKAC 1 cut(s) 2537
AciI CCGC 3 cut(s) 696, 3047, 3107
AclWI GGATC 6 cut(s) 169, 696, 2318, 2366, 2642, 2660
AcoI YGGCCR 1 cut(s) 637
AcsI RAATTY 8 cut(s) 227, 291, 862, 1301, 1337, 1365, 1675, 2906
AcuI CTGAAG 6 cut(s) 232, 604, 1247, 1505, 2425, 2795
AcyI GRCGYC 2 cut(s) 2787, 3069
AfaI GTAC 6 cut(s) 29, 769, 1138, 2204, 2267, 2344
AfiI CCNNNNNNNGG 5 cut(s) 655, 656, 1979, 2378, 2669
AflII CTTAAG 1 cut(s) 2689
AflIII ACRYGT 2 cut(s) 2199, 2540
AjnI CCWGG 7 cut(s) 502, 639, 1072, 2376, 2416, 2431, 2668
AjuI GAANNNNNNNTTGG 2 cut(s) 965, 997
Alw21I GWGCWC 2 cut(s) 2802, 2965
Alw26I GTCTC 3 cut(s) 738, 1408, 1615
Alw44I GTGCAC 1 cut(s) 2798
AlwI GGATC 6 cut(s) 169, 696, 2318, 2366, 2642, 2660
AlwNI CAGNNNCTG 1 cut(s) 2669
Ama87I CYCGRG 1 cut(s) 126
AoxI GGCC 4 cut(s) 637, 1542, 1981, 2434
ApaLI GTGCAC 1 cut(s) 2798
ApoI RAATTY 8 cut(s) 227, 291, 862, 1301, 1337, 1365, 1675, 2906
AseI ATTAAT 1 cut(s) 141
Asp700I GAANNNNTTC 4 cut(s) 121, 1050, 1260, 2525
AspS9I GGNCC 5 cut(s) 460, 643, 1543, 2835, 2945
AsuC2I CCSGG 1 cut(s) 3073
AsuHPI GGTGA 3 cut(s) 311, 332, 2926
AvaI CYCGRG 1 cut(s) 126
AvaII GGWCC 4 cut(s) 460, 643, 2835, 2945
AxyI CCTNAGG 1 cut(s) 1826
BaeGI GKGCMC 1 cut(s) 2802
BalI TGGCCA 1 cut(s) 639
BanI GGYRCC 2 cut(s) 1069, 2428
BarI GAAGNNNNNNTAC 2 cut(s) 354, 386
BauI CACGAG 1 cut(s) 2801
BbsI GAAGAC 3 cut(s) 1493, 2518, 2682
Bbv12I GWGCWC 2 cut(s) 2802, 2965
BbvCI CCTCAGC 1 cut(s) 1751
BccI CCATC 8 cut(s) 17, 152, 923, 1314, 1351, 2381, 2653, 2698
BceAI ACGGC 1 cut(s) 2313
BcgI CGANNNNNNTGC 4 cut(s) 73, 107, 2304, 2338
BciT130I CCWGG 7 cut(s) 504, 641, 1074, 2378, 2418, 2433, 2670
BclI TGATCA 3 cut(s) 451, 2017, 3022
BcnI CCSGG 1 cut(s) 3073
BcoDI GTCTC 3 cut(s) 738, 1408, 1615
BfaI CTAG 4 cut(s) 528, 1058, 1253, 1359
BfmI CTRYAG 1 cut(s) 323
BfrI CTTAAG 1 cut(s) 2689
BglII AGATCT 2 cut(s) 1957, 2759
BisI GCNGC 1 cut(s) 3047
BlpI GCTNAGC 1 cut(s) 2162
BlsI GCNGC 1 cut(s) 3048
BmcAI AGTACT 1 cut(s) 2267
Bme1390I CCNGG 8 cut(s) 504, 641, 1074, 2378, 2418, 2433, 2670, 3073
Bme18I GGWCC 4 cut(s) 460, 643, 2835, 2945
BmeT110I CYCGRG 1 cut(s) 126
BmgT120I GGNCC 5 cut(s) 460, 643, 1543, 2835, 2945
BmiI GGNNCC 4 cut(s) 1071, 1545, 2430, 2837
BmrFI CCNGG 8 cut(s) 504, 641, 1074, 2378, 2418, 2433, 2670, 3073
BmsI GCATC 9 cut(s) 397, 460, 571, 683, 1005, 1027, 1408, 1709, 2004
BpiI GAAGAC 3 cut(s) 1493, 2518, 2682
BpmI CTGGAG 1 cut(s) 2691
Bpu10I CCTNAGC 1 cut(s) 1751
Bpu1102I GCTNAGC 1 cut(s) 2162
BpuEI CTTGAG 4 cut(s) 1432, 1708, 1773, 1871
BpuMI CCSGG 1 cut(s) 3073
Bsa29I ATCGAT 1 cut(s) 691
BsaBI GATNNNNATC 1 cut(s) 450
BsaHI GRCGYC 2 cut(s) 2787, 3069
BsaJI CCNNGG 8 cut(s) 502, 1999, 2069, 2218, 2277, 2377, 2417, 3072
BsaWI WCCGGW 1 cut(s) 1428
Bsc4I CCNNNNNNNGG 5 cut(s) 655, 656, 1979, 2378, 2669
Bse1I ACTGG 4 cut(s) 930, 1545, 1810, 2867
Bse21I CCTNAGG 1 cut(s) 1826
Bse8I GATNNNNATC 1 cut(s) 450
BseBI CCWGG 7 cut(s) 504, 641, 1074, 2378, 2418, 2433, 2670
BseCI ATCGAT 1 cut(s) 691
BseDI CCNNGG 8 cut(s) 502, 1999, 2069, 2218, 2277, 2377, 2417, 3072
BseJI GATNNNNATC 1 cut(s) 450
BseLI CCNNNNNNNGG 5 cut(s) 655, 656, 1979, 2378, 2669
BseMII CTCAG 5 cut(s) 91, 832, 1194, 1742, 1817
BseNI ACTGG 4 cut(s) 930, 1545, 1810, 2867
BseRI GAGGAG 1 cut(s) 1843
BseSI GKGCMC 1 cut(s) 2802
BsgI GTGCAG 2 cut(s) 555, 2352
BshFI GGCC 4 cut(s) 639, 1544, 1983, 2436
BshNI GGYRCC 2 cut(s) 1069, 2428
BshVI ATCGAT 1 cut(s) 691
BsiHKAI GWGCWC 2 cut(s) 2802, 2965
BsiHKCI CYCGRG 1 cut(s) 126
BsiSI CCGG 2 cut(s) 1429, 3072
BslFI GGGAC 5 cut(s) 1046, 2394, 3029, 3080, 3089
BslI CCNNNNNNNGG 5 cut(s) 655, 656, 1979, 2378, 2669
BsmAI GTCTC 3 cut(s) 738, 1408, 1615
BsmBI CGTCTC 1 cut(s) 738
BsmFI GGGAC 5 cut(s) 1046, 2394, 3029, 3080, 3089
BsnI GGCC 4 cut(s) 639, 1544, 1983, 2436
BsoBI CYCGRG 1 cut(s) 126
Bsp1286I GDGCHC 2 cut(s) 2802, 2965
Bsp1407I TGTACA 1 cut(s) 2202
Bsp1720I GCTNAGC 1 cut(s) 2162
Bsp19I CCATGG 1 cut(s) 2277
BspACI CCGC 3 cut(s) 696, 3047, 3107
BspANI GGCC 4 cut(s) 639, 1544, 1983, 2436
BspCNI CTCAG 5 cut(s) 90, 831, 1193, 1743, 1818
BspDI ATCGAT 1 cut(s) 691
BspHI TCATGA 3 cut(s) 516, 1597, 2754
BspLI GGNNCC 4 cut(s) 1071, 1545, 2430, 2837
BspPI GGATC 6 cut(s) 169, 696, 2318, 2366, 2642, 2660
BspQI GCTCTTC 1 cut(s) 720
BspT107I GGYRCC 2 cut(s) 1069, 2428
BspTI CTTAAG 1 cut(s) 2689
BsrGI TGTACA 1 cut(s) 2202
BsrI ACTGG 4 cut(s) 930, 1545, 1810, 2867
BssECI CCNNGG 8 cut(s) 502, 1999, 2069, 2218, 2277, 2377, 2417, 3072
BssNAI GTATAC 1 cut(s) 2538
BssNI GRCGYC 2 cut(s) 2787, 3069
BssSI CACGAG 1 cut(s) 2801
BssT1I CCWWGG 3 cut(s) 2069, 2218, 2277
Bst1107I GTATAC 1 cut(s) 2538
Bst2BI CACGAG 1 cut(s) 2801
Bst2UI CCWGG 7 cut(s) 504, 641, 1074, 2378, 2418, 2433, 2670
Bst4CI ACNGT 5 cut(s) 375, 2151, 2287, 2573, 2743
Bst6I CTCTTC 4 cut(s) 352, 623, 720, 1036
BstACI GRCGYC 2 cut(s) 2787, 3069
BstAFI CTTAAG 1 cut(s) 2689
BstAPI GCANNNNNTGC 1 cut(s) 230
BstAUI TGTACA 1 cut(s) 2202
BstC8I GCNNGC 5 cut(s) 86, 626, 630, 1582, 3051
BstDSI CCRYGG 1 cut(s) 2277
BstEII GGTNACC 1 cut(s) 1931
BstMAI GTCTC 3 cut(s) 738, 1408, 1615
BstMWI GCNNNNNNNGC 5 cut(s) 230, 2053, 2062, 2442, 2616
BstNI CCWGG 7 cut(s) 504, 641, 1074, 2378, 2418, 2433, 2670
BstNSI RCATGY 5 cut(s) 632, 885, 1171, 2203, 2544
BstPI GGTNACC 1 cut(s) 1931
BstSCI CCNGG 8 cut(s) 502, 639, 1072, 2376, 2416, 2431, 2668, 3071
BstSFI CTRYAG 1 cut(s) 323
BstSLI GKGCMC 1 cut(s) 2802
BstV2I GAAGAC 3 cut(s) 1493, 2518, 2682
BstX2I RGATCY 4 cut(s) 1957, 2634, 2665, 2759
BstXI CCANNNNNNTGG 3 cut(s) 23, 308, 2269
BstYI RGATCY 4 cut(s) 1957, 2634, 2665, 2759
BstZ17I GTATAC 1 cut(s) 2538
Bsu15I ATCGAT 1 cut(s) 691
Bsu36I CCTNAGG 1 cut(s) 1826
BsuRI GGCC 4 cut(s) 639, 1544, 1983, 2436
BsuTUI ATCGAT 1 cut(s) 691
BtgI CCRYGG 1 cut(s) 2277
BtsI GCAGTG 2 cut(s) 2322, 3041
BtsIMutI CAGTG 8 cut(s) 380, 388, 1481, 1538, 1803, 2322, 2963, 3041
Cac8I GCNNGC 5 cut(s) 86, 626, 630, 1582, 3051
CaiI CAGNNNCTG 1 cut(s) 2669
CciI TCATGA 3 cut(s) 516, 1597, 2754
Cfr13I GGNCC 5 cut(s) 460, 643, 1543, 2835, 2945
ClaI ATCGAT 1 cut(s) 691
CseI GACGC 3 cut(s) 842, 2776, 3077
Csp6I GTAC 6 cut(s) 28, 768, 1137, 2203, 2266, 2343
CviQI GTAC 6 cut(s) 28, 768, 1137, 2203, 2266, 2343
DraI TTTAAA 1 cut(s) 1455
EaeI YGGCCR 1 cut(s) 637
Eam1104I CTCTTC 4 cut(s) 352, 623, 720, 1036
EarI CTCTTC 4 cut(s) 352, 623, 720, 1036
Eco130I CCWWGG 3 cut(s) 2069, 2218, 2277
Eco32I GATATC 1 cut(s) 2369
Eco47I GGWCC 4 cut(s) 460, 643, 2835, 2945
Eco57I CTGAAG 6 cut(s) 232, 604, 1247, 1505, 2425, 2795
Eco81I CCTNAGG 1 cut(s) 1826
Eco88I CYCGRG 1 cut(s) 126
Eco91I GGTNACC 1 cut(s) 1931
EcoO109I RGGNCCY 1 cut(s) 2835
EcoO65I GGTNACC 1 cut(s) 1931
EcoRI GAATTC 1 cut(s) 2906
EcoRII CCWGG 7 cut(s) 502, 639, 1072, 2376, 2416, 2431, 2668
EcoRV GATATC 1 cut(s) 2369
EcoT14I CCWWGG 3 cut(s) 2069, 2218, 2277
EcoT22I ATGCAT 2 cut(s) 1020, 1401
ErhI CCWWGG 3 cut(s) 2069, 2218, 2277
Esp3I CGTCTC 1 cut(s) 738
FaqI GGGAC 5 cut(s) 1046, 2394, 3029, 3080, 3089
FauNDI CATATG 1 cut(s) 456
FbaI TGATCA 3 cut(s) 451, 2017, 3022
FblI GTMKAC 1 cut(s) 2537
Fnu4HI GCNGC 1 cut(s) 3047
Fsp4HI GCNGC 1 cut(s) 3047
FspBI CTAG 4 cut(s) 528, 1058, 1253, 1359
GluI GCNGC 1 cut(s) 3047
GsuI CTGGAG 1 cut(s) 2691
HaeIII GGCC 4 cut(s) 639, 1544, 1983, 2436
HapII CCGG 2 cut(s) 1429, 3072
HgaI GACGC 3 cut(s) 842, 2776, 3077
Hin1I GRCGYC 2 cut(s) 2787, 3069
HpaII CCGG 2 cut(s) 1429, 3072
HphI GGTGA 3 cut(s) 311, 332, 2926
Hpy166II GTNNAC 5 cut(s) 319, 1186, 2538, 2800, 2973
Hpy188I TCNGA 9 cut(s) 251, 821, 1743, 1797, 1906, 2000, 2141, 2363, 3022
Hpy8I GTNNAC 5 cut(s) 319, 1186, 2538, 2800, 2973
Hpy99I CGWCG 1 cut(s) 836
HpyCH4III ACNGT 5 cut(s) 375, 2151, 2287, 2573, 2743
HpyCH4IV ACGT 5 cut(s) 1008, 1081, 1812, 2896, 2969
HpyF10VI GCNNNNNNNGC 5 cut(s) 230, 2053, 2062, 2442, 2616
HpySE526I ACGT 5 cut(s) 1008, 1081, 1812, 2896, 2969
Hsp92I GRCGYC 2 cut(s) 2787, 3069
Ksp22I TGATCA 3 cut(s) 451, 2017, 3022
LguI GCTCTTC 1 cut(s) 720
LmnI GCTCC 1 cut(s) 1747
LweI GCATC 9 cut(s) 397, 460, 571, 683, 1005, 1027, 1408, 1709, 2004
MaeI CTAG 4 cut(s) 528, 1058, 1253, 1359
MaeII ACGT 5 cut(s) 1008, 1081, 1812, 2896, 2969
MfeI CAATTG 4 cut(s) 651, 948, 990, 1146
MflI RGATCY 4 cut(s) 1957, 2634, 2665, 2759
MhlI GDGCHC 2 cut(s) 2802, 2965
MlsI TGGCCA 1 cut(s) 639
MluNI TGGCCA 1 cut(s) 639
MlyI GAGTC 6 cut(s) 41, 696, 1275, 1617, 2330, 3011
MmeI TCCRAC 4 cut(s) 154, 874, 2088, 2960
Mox20I TGGCCA 1 cut(s) 639
Mph1103I ATGCAT 2 cut(s) 1020, 1401
MroXI GAANNNNTTC 4 cut(s) 121, 1050, 1260, 2525
MscI TGGCCA 1 cut(s) 639
MslI CAYNNNNRTG 6 cut(s) 21, 753, 1172, 2624, 2753, 2847
Msp20I TGGCCA 1 cut(s) 639
MspA1I CMGCKG 2 cut(s) 624, 2773
MspCI CTTAAG 1 cut(s) 2689
MspI CCGG 2 cut(s) 1429, 3072
MspR9I CCNGG 8 cut(s) 504, 641, 1074, 2378, 2418, 2433, 2670, 3073
MunI CAATTG 4 cut(s) 651, 948, 990, 1146
MvaI CCWGG 7 cut(s) 504, 641, 1074, 2378, 2418, 2433, 2670
MwoI GCNNNNNNNGC 5 cut(s) 230, 2053, 2062, 2442, 2616
NciI CCSGG 1 cut(s) 3073
NcoI CCATGG 1 cut(s) 2277
NdeI CATATG 1 cut(s) 456
NlaIV GGNNCC 4 cut(s) 1071, 1545, 2430, 2837
NmuCI GTSAC 1 cut(s) 2737
NsiI ATGCAT 2 cut(s) 1020, 1401
NspI RCATGY 5 cut(s) 632, 885, 1171, 2203, 2544
PaeI GCATGC 1 cut(s) 632
PaeR7I CTCGAG 1 cut(s) 126
PagI TCATGA 3 cut(s) 516, 1597, 2754
PciI ACATGT 2 cut(s) 2199, 2540
PciSI GCTCTTC 1 cut(s) 720
PdmI GAANNNNTTC 4 cut(s) 121, 1050, 1260, 2525
PflFI GACNNNGTC 1 cut(s) 2735
PflMI CCANNNNNTGG 2 cut(s) 1979, 2669
PfoI TCCNGGA 1 cut(s) 2668
PkrI GCNGC 1 cut(s) 3048
PleI GAGTC 6 cut(s) 40, 696, 1275, 1617, 2329, 3011
PpsI GAGTC 6 cut(s) 40, 696, 1275, 1617, 2329, 3011
PpuMI RGGWCCY 1 cut(s) 2835
PscI ACATGT 2 cut(s) 2199, 2540
PshBI ATTAAT 1 cut(s) 141
Psp5II RGGWCCY 1 cut(s) 2835
Psp6I CCWGG 7 cut(s) 502, 639, 1072, 2376, 2416, 2431, 2668
PspEI GGTNACC 1 cut(s) 1931
PspGI CCWGG 7 cut(s) 502, 639, 1072, 2376, 2416, 2431, 2668
PspN4I GGNNCC 4 cut(s) 1071, 1545, 2430, 2837
PspPI GGNCC 5 cut(s) 460, 643, 1543, 2835, 2945
PspPPI RGGWCCY 1 cut(s) 2835
PsrI GAACNNNNNNTAC 2 cut(s) 1776, 1808
PstNI CAGNNNCTG 1 cut(s) 2669
PsuI RGATCY 4 cut(s) 1957, 2634, 2665, 2759
PsyI GACNNNGTC 1 cut(s) 2735
PvuII CAGCTG 2 cut(s) 624, 2773
RsaI GTAC 6 cut(s) 29, 769, 1138, 2204, 2267, 2344
RsaNI GTAC 6 cut(s) 28, 768, 1137, 2203, 2266, 2343
RseI CAYNNNNRTG 6 cut(s) 21, 753, 1172, 2624, 2753, 2847
SapI GCTCTTC 1 cut(s) 720
SatI GCNGC 1 cut(s) 3047
Sau96I GGNCC 5 cut(s) 460, 643, 1543, 2835, 2945
ScaI AGTACT 1 cut(s) 2267
SchI GAGTC 6 cut(s) 41, 696, 1275, 1617, 2330, 3011
ScrFI CCNGG 8 cut(s) 504, 641, 1074, 2378, 2418, 2433, 2670, 3073
SduI GDGCHC 2 cut(s) 2802, 2965
SfaNI GCATC 9 cut(s) 397, 460, 571, 683, 1005, 1027, 1408, 1709, 2004
SfcI CTRYAG 1 cut(s) 323
Sfr274I CTCGAG 1 cut(s) 126
SinI GGWCC 4 cut(s) 460, 643, 2835, 2945
SlaI CTCGAG 1 cut(s) 126
SmiMI CAYNNNNRTG 6 cut(s) 21, 753, 1172, 2624, 2753, 2847
SmlI CTYRAG 6 cut(s) 126, 1411, 1723, 1788, 1886, 2689
SmoI CTYRAG 6 cut(s) 126, 1411, 1723, 1788, 1886, 2689
SphI GCATGC 1 cut(s) 632
SsiI CCGC 3 cut(s) 696, 3047, 3107
SspI AATATT 2 cut(s) 139, 477
SspMI CTAG 4 cut(s) 528, 1058, 1253, 1359
StyD4I CCNGG 8 cut(s) 502, 639, 1072, 2376, 2416, 2431, 2668, 3071
StyI CCWWGG 3 cut(s) 2069, 2218, 2277
TaaI ACNGT 5 cut(s) 375, 2151, 2287, 2573, 2743
TaiI ACGT 5 cut(s) 1011, 1084, 1815, 2899, 2972
TaqI TCGA 8 cut(s) 127, 674, 691, 1113, 1346, 2244, 2512, 2910
TatI WGTACW 3 cut(s) 767, 2202, 2265
TauI GCSGC 1 cut(s) 3049
TscAI CASTG 8 cut(s) 380, 388, 1488, 1545, 1810, 2322, 2970, 3048
TseFI GTSAC 1 cut(s) 2737
Tsp45I GTSAC 1 cut(s) 2737
TspDTI ATGAA 9 cut(s) 135, 618, 1014, 1586, 1614, 1655, 2403, 2642, 2743
TspRI CASTG 8 cut(s) 380, 388, 1488, 1545, 1810, 2322, 2970, 3048
Tth111I GACNNNGTC 1 cut(s) 2735
Van91I CCANNNNNTGG 2 cut(s) 1979, 2669
Vha464I CTTAAG 1 cut(s) 2689
VneI GTGCAC 1 cut(s) 2798
VpaK11BI GGWCC 4 cut(s) 460, 643, 2835, 2945
VspI ATTAAT 1 cut(s) 141
XapI RAATTY 8 cut(s) 227, 291, 862, 1301, 1337, 1365, 1675, 2906
XceI RCATGY 5 cut(s) 632, 885, 1171, 2203, 2544
XcmI CCANNNNNNNNNTGG 2 cut(s) 350, 1845
XhoI CTCGAG 1 cut(s) 126
XmiI GTMKAC 1 cut(s) 2537
XmnI GAANNNNTTC 4 cut(s) 121, 1050, 1260, 2525
XspI CTAG 4 cut(s) 528, 1058, 1253, 1359
ZrmI AGTACT 1 cut(s) 2267
Zsp2I ATGCAT 2 cut(s) 1020, 1401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.