TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 24 - 192 | 3.2e-49 | TIR domain |
| TIR_2 | PF13676 | 25 - 122 | 2.5e-15 | TIR domain |
| NB-ARC | PF00931 | 205 - 375 | 1.1e-17 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 444 - 514 | 5.1e-19 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 668 - 758 | 2e-08 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1482 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 293, 1388 |
| Acc16I | TGCGCA | 1 cut(s) | 1727 |
| AccB1I | GGYRCC | 2 cut(s) | 279, 2704 |
| AccII | CGCG | 1 cut(s) | 573 |
| AccIII | TCCGGA | 1 cut(s) | 272 |
| AciI | CCGC | 4 cut(s) | 154, 509, 830, 2325 |
| AclWI | GGATC | 6 cut(s) | 295, 356, 913, 1933, 2817, 3017 |
| AcoI | YGGCCR | 1 cut(s) | 2252 |
| AcsI | RAATTY | 8 cut(s) | 606, 675, 780, 1070, 1342, 1681, 1745, 1817 |
| AcuI | CTGAAG | 4 cut(s) | 1184, 1992, 2823, 3075 |
| AcvI | CACGTG | 1 cut(s) | 373 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 147, 1139 |
| AflII | CTTAAG | 2 cut(s) | 580, 2393 |
| AflIII | ACRYGT | 2 cut(s) | 2524, 3036 |
| AjnI | CCWGG | 2 cut(s) | 991, 2254 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 134, 166 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2658, 2690 |
| Alw21I | GWGCWC | 2 cut(s) | 498, 1101 |
| Alw26I | GTCTC | 7 cut(s) | 92, 159, 1506, 1888, 2144, 2420, 2803 |
| AlwI | GGATC | 6 cut(s) | 295, 356, 913, 1933, 2817, 3017 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1207 |
| Aor13HI | TCCGGA | 1 cut(s) | 272 |
| AoxI | GGCC | 5 cut(s) | 949, 1633, 2252, 2371, 2816 |
| ApeKI | GCWGC | 6 cut(s) | 131, 2912, 2915, 3070, 3079, 3110 |
| ApoI | RAATTY | 8 cut(s) | 606, 675, 780, 1070, 1342, 1681, 1745, 1817 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2412, 2444 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1530, 1782 |
| AspLEI | GCGC | 1 cut(s) | 1728 |
| AspS9I | GGNCC | 3 cut(s) | 949, 1126, 2816 |
| AsuC2I | CCSGG | 1 cut(s) | 2679 |
| AsuHPI | GGTGA | 2 cut(s) | 423, 3101 |
| AsuII | TTCGAA | 2 cut(s) | 254, 747 |
| AvaII | GGWCC | 1 cut(s) | 1126 |
| AxyI | CCTNAGG | 1 cut(s) | 2746 |
| BaeGI | GKGCMC | 1 cut(s) | 579 |
| BalI | TGGCCA | 1 cut(s) | 2254 |
| BanI | GGYRCC | 2 cut(s) | 279, 2704 |
| BanII | GRGCYC | 1 cut(s) | 1101 |
| BauI | CACGAG | 1 cut(s) | 714 |
| BbrPI | CACGTG | 1 cut(s) | 373 |
| BbsI | GAAGAC | 6 cut(s) | 198, 323, 340, 564, 1671, 3051 |
| Bbv12I | GWGCWC | 2 cut(s) | 498, 1101 |
| BbvI | GCAGC | 6 cut(s) | 143, 2924, 2927, 3082, 3091, 3122 |
| BceAI | ACGGC | 2 cut(s) | 1938, 2803 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1100, 1134 |
| BciT130I | CCWGG | 2 cut(s) | 993, 2256 |
| BclI | TGATCA | 1 cut(s) | 2608 |
| BcnI | CCSGG | 1 cut(s) | 2679 |
| BcoDI | GTCTC | 7 cut(s) | 92, 159, 1506, 1888, 2144, 2420, 2803 |
| BfmI | CTRYAG | 1 cut(s) | 3108 |
| BfrI | CTTAAG | 2 cut(s) | 580, 2393 |
| BglII | AGATCT | 1 cut(s) | 478 |
| BisI | GCNGC | 6 cut(s) | 132, 2913, 2916, 3071, 3080, 3111 |
| BlsI | GCNGC | 6 cut(s) | 133, 2914, 2917, 3072, 3081, 3112 |
| BmcAI | AGTACT | 2 cut(s) | 918, 2451 |
| Bme1390I | CCNGG | 3 cut(s) | 993, 2256, 2679 |
| Bme18I | GGWCC | 1 cut(s) | 1126 |
| BmgT120I | GGNCC | 3 cut(s) | 949, 1126, 2816 |
| BmiI | GGNNCC | 4 cut(s) | 152, 281, 2676, 2706 |
| BmrFI | CCNGG | 3 cut(s) | 993, 2256, 2679 |
| BmrI | ACTGGG | 1 cut(s) | 1875 |
| BmsI | GCATC | 8 cut(s) | 949, 1485, 1507, 1585, 2373, 2608, 3091, 3093 |
| BmuI | ACTGGG | 1 cut(s) | 1875 |
| BpiI | GAAGAC | 6 cut(s) | 198, 323, 340, 564, 1671, 3051 |
| BpmI | CTGGAG | 2 cut(s) | 1115, 2168 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1192 |
| Bpu14I | TTCGAA | 2 cut(s) | 254, 747 |
| BpuEI | CTTGAG | 3 cut(s) | 9, 100, 1912 |
| BpuMI | CCSGG | 1 cut(s) | 2679 |
| Bsa29I | ATCGAT | 3 cut(s) | 360, 2887, 3012 |
| BsaAI | YACGTR | 1 cut(s) | 373 |
| BsaBI | GATNNNNATC | 2 cut(s) | 360, 939 |
| BsaJI | CCNNGG | 2 cut(s) | 2374, 2678 |
| BsaWI | WCCGGW | 2 cut(s) | 272, 433 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 147, 1139 |
| Bse1I | ACTGG | 8 cut(s) | 344, 1098, 1881, 2151, 2192, 2457, 2574, 2876 |
| Bse21I | CCTNAGG | 1 cut(s) | 2746 |
| Bse3DI | GCAATG | 1 cut(s) | 708 |
| Bse8I | GATNNNNATC | 2 cut(s) | 360, 939 |
| BseAI | TCCGGA | 1 cut(s) | 272 |
| BseBI | CCWGG | 2 cut(s) | 993, 2256 |
| BseCI | ATCGAT | 3 cut(s) | 360, 2887, 3012 |
| BseDI | CCNNGG | 2 cut(s) | 2374, 2678 |
| BseJI | GATNNNNATC | 2 cut(s) | 360, 939 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 147, 1139 |
| BseMI | GCAATG | 1 cut(s) | 708 |
| BseMII | CTCAG | 4 cut(s) | 1545, 1592, 1963, 2760 |
| BseNI | ACTGG | 8 cut(s) | 344, 1098, 1881, 2151, 2192, 2457, 2574, 2876 |
| BseRI | GAGGAG | 3 cut(s) | 110, 201, 2700 |
| BseSI | GKGCMC | 1 cut(s) | 579 |
| BseXI | GCAGC | 6 cut(s) | 143, 2924, 2927, 3082, 3091, 3122 |
| BseYI | CCCAGC | 1 cut(s) | 1809 |
| BsgI | GTGCAG | 1 cut(s) | 2216 |
| Bsh1236I | CGCG | 1 cut(s) | 573 |
| BshFI | GGCC | 5 cut(s) | 951, 1635, 2254, 2373, 2818 |
| BshNI | GGYRCC | 2 cut(s) | 279, 2704 |
| BshVI | ATCGAT | 3 cut(s) | 360, 2887, 3012 |
| BsiHKAI | GWGCWC | 2 cut(s) | 498, 1101 |
| BsiSI | CCGG | 3 cut(s) | 273, 434, 2678 |
| BslFI | GGGAC | 1 cut(s) | 1979 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 147, 1139 |
| BsmAI | GTCTC | 7 cut(s) | 92, 159, 1506, 1888, 2144, 2420, 2803 |
| BsmBI | CGTCTC | 2 cut(s) | 159, 2144 |
| BsmFI | GGGAC | 1 cut(s) | 1979 |
| BsmI | GAATGC | 2 cut(s) | 1437, 2832 |
| BsnI | GGCC | 5 cut(s) | 951, 1635, 2254, 2373, 2818 |
| Bsp119I | TTCGAA | 2 cut(s) | 254, 747 |
| Bsp1286I | GDGCHC | 3 cut(s) | 498, 579, 1101 |
| Bsp13I | TCCGGA | 1 cut(s) | 272 |
| Bsp1407I | TGTACA | 3 cut(s) | 1756, 2408, 2565 |
| BspACI | CCGC | 4 cut(s) | 154, 509, 830, 2325 |
| BspANI | GGCC | 5 cut(s) | 951, 1635, 2254, 2373, 2818 |
| BspCNI | CTCAG | 4 cut(s) | 1546, 1593, 1962, 2759 |
| BspDI | ATCGAT | 3 cut(s) | 360, 2887, 3012 |
| BspEI | TCCGGA | 1 cut(s) | 272 |
| BspFNI | CGCG | 1 cut(s) | 573 |
| BspHI | TCATGA | 1 cut(s) | 297 |
| BspLI | GGNNCC | 4 cut(s) | 152, 281, 2676, 2706 |
| BspMAI | CTGCAG | 1 cut(s) | 3112 |
| BspPI | GGATC | 6 cut(s) | 295, 356, 913, 1933, 2817, 3017 |
| BspQI | GCTCTTC | 1 cut(s) | 1203 |
| BspT104I | TTCGAA | 2 cut(s) | 254, 747 |
| BspT107I | GGYRCC | 2 cut(s) | 279, 2704 |
| BspTI | CTTAAG | 2 cut(s) | 580, 2393 |
| BsrDI | GCAATG | 1 cut(s) | 708 |
| BsrGI | TGTACA | 3 cut(s) | 1756, 2408, 2565 |
| BsrI | ACTGG | 8 cut(s) | 344, 1098, 1881, 2151, 2192, 2457, 2574, 2876 |
| BssECI | CCNNGG | 2 cut(s) | 2374, 2678 |
| BssSI | CACGAG | 1 cut(s) | 714 |
| BssT1I | CCWWGG | 1 cut(s) | 2374 |
| Bst2BI | CACGAG | 1 cut(s) | 714 |
| Bst2UI | CCWGG | 2 cut(s) | 993, 2256 |
| Bst4CI | ACNGT | 5 cut(s) | 228, 1178, 1283, 2155, 2727 |
| Bst6I | CTCTTC | 4 cut(s) | 1203, 1516, 1773, 1839 |
| BstAFI | CTTAAG | 2 cut(s) | 580, 2393 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 473 |
| BstAUI | TGTACA | 3 cut(s) | 1756, 2408, 2565 |
| BstBAI | YACGTR | 1 cut(s) | 373 |
| BstBI | TTCGAA | 2 cut(s) | 254, 747 |
| BstC8I | GCNNGC | 4 cut(s) | 575, 1023, 2114, 3108 |
| BstFNI | CGCG | 1 cut(s) | 573 |
| BstHHI | GCGC | 1 cut(s) | 1728 |
| BstMAI | GTCTC | 7 cut(s) | 92, 159, 1506, 1888, 2144, 2420, 2803 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 29, 473, 482, 2370, 2697, 3076, 3079, 3116 |
| BstNI | CCWGG | 2 cut(s) | 993, 2256 |
| BstNSI | RCATGY | 5 cut(s) | 1025, 1365, 1651, 2528, 3040 |
| BstSCI | CCNGG | 3 cut(s) | 991, 2254, 2677 |
| BstSFI | CTRYAG | 1 cut(s) | 3108 |
| BstSLI | GKGCMC | 1 cut(s) | 579 |
| BstUI | CGCG | 1 cut(s) | 573 |
| BstV1I | GCAGC | 6 cut(s) | 143, 2924, 2927, 3082, 3091, 3122 |
| BstV2I | GAAGAC | 6 cut(s) | 198, 323, 340, 564, 1671, 3051 |
| BstX2I | RGATCY | 4 cut(s) | 478, 905, 1938, 2809 |
| BstYI | RGATCY | 4 cut(s) | 478, 905, 1938, 2809 |
| Bsu15I | ATCGAT | 3 cut(s) | 360, 2887, 3012 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2746 |
| BsuRI | GGCC | 5 cut(s) | 951, 1635, 2254, 2373, 2818 |
| BsuTUI | ATCGAT | 3 cut(s) | 360, 2887, 3012 |
| BtsIMutI | CAGTG | 7 cut(s) | 121, 1091, 1174, 1288, 2144, 2199, 2869 |
| Cac8I | GCNNGC | 4 cut(s) | 575, 1023, 2114, 3108 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1207 |
| CciI | TCATGA | 1 cut(s) | 297 |
| CfoI | GCGC | 1 cut(s) | 1728 |
| Cfr13I | GGNCC | 3 cut(s) | 949, 1126, 2816 |
| ClaI | ATCGAT | 3 cut(s) | 360, 2887, 3012 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 293, 1388 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 293, 1388 |
| EaeI | YGGCCR | 1 cut(s) | 2252 |
| Eam1104I | CTCTTC | 4 cut(s) | 1203, 1516, 1773, 1839 |
| EarI | CTCTTC | 4 cut(s) | 1203, 1516, 1773, 1839 |
| Ecl136II | GAGCTC | 1 cut(s) | 1099 |
| Eco130I | CCWWGG | 1 cut(s) | 2374 |
| Eco147I | AGGCCT | 2 cut(s) | 1635, 2373 |
| Eco24I | GRGCYC | 1 cut(s) | 1101 |
| Eco32I | GATATC | 1 cut(s) | 358 |
| Eco47I | GGWCC | 1 cut(s) | 1126 |
| Eco53kI | GAGCTC | 1 cut(s) | 1099 |
| Eco57I | CTGAAG | 4 cut(s) | 1184, 1992, 2823, 3075 |
| Eco72I | CACGTG | 1 cut(s) | 373 |
| Eco81I | CCTNAGG | 1 cut(s) | 2746 |
| EcoICRI | GAGCTC | 1 cut(s) | 1099 |
| EcoRI | GAATTC | 2 cut(s) | 606, 1817 |
| EcoRII | CCWGG | 2 cut(s) | 991, 2254 |
| EcoRV | GATATC | 1 cut(s) | 358 |
| EcoT14I | CCWWGG | 1 cut(s) | 2374 |
| EcoT22I | ATGCAT | 4 cut(s) | 1500, 1653, 1714, 2601 |
| EcoT38I | GRGCYC | 1 cut(s) | 1101 |
| ErhI | CCWWGG | 1 cut(s) | 2374 |
| Esp3I | CGTCTC | 2 cut(s) | 159, 2144 |
| FaqI | GGGAC | 1 cut(s) | 1979 |
| FauNDI | CATATG | 2 cut(s) | 668, 1653 |
| FbaI | TGATCA | 1 cut(s) | 2608 |
| Fnu4HI | GCNGC | 6 cut(s) | 132, 2913, 2916, 3071, 3080, 3111 |
| FriOI | GRGCYC | 1 cut(s) | 1101 |
| Fsp4HI | GCNGC | 6 cut(s) | 132, 2913, 2916, 3071, 3080, 3111 |
| FspI | TGCGCA | 1 cut(s) | 1727 |
| GlaI | GCGC | 1 cut(s) | 1727 |
| GluI | GCNGC | 6 cut(s) | 132, 2913, 2916, 3071, 3080, 3111 |
| GsaI | CCCAGC | 1 cut(s) | 1813 |
| GsuI | CTGGAG | 2 cut(s) | 1115, 2168 |
| HaeIII | GGCC | 5 cut(s) | 951, 1635, 2254, 2373, 2818 |
| HapII | CCGG | 3 cut(s) | 273, 434, 2678 |
| HhaI | GCGC | 1 cut(s) | 1728 |
| Hin6I | GCGC | 1 cut(s) | 1726 |
| HinP1I | GCGC | 1 cut(s) | 1726 |
| HincII | GTYRAC | 1 cut(s) | 1171 |
| HindII | GTYRAC | 1 cut(s) | 1171 |
| HindIII | AAGCTT | 4 cut(s) | 30, 2032, 2114, 2135 |
| HpaI | GTTAAC | 1 cut(s) | 1171 |
| HpaII | CCGG | 3 cut(s) | 273, 434, 2678 |
| HphI | GGTGA | 2 cut(s) | 423, 3101 |
| Hpy166II | GTNNAC | 6 cut(s) | 724, 1171, 1253, 1298, 2409, 2900 |
| Hpy8I | GTNNAC | 6 cut(s) | 724, 1171, 1253, 1298, 2409, 2900 |
| Hpy99I | CGWCG | 1 cut(s) | 1047 |
| HpyAV | CCTTC | 8 cut(s) | 314, 743, 1133, 1372, 1625, 1683, 1900, 2888 |
| HpyCH4III | ACNGT | 5 cut(s) | 228, 1178, 1283, 2155, 2727 |
| HpyCH4IV | ACGT | 4 cut(s) | 14, 72, 372, 1561 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 29, 473, 482, 2370, 2697, 3076, 3079, 3116 |
| HpySE526I | ACGT | 4 cut(s) | 14, 72, 372, 1561 |
| HspAI | GCGC | 1 cut(s) | 1726 |
| Kpn2I | TCCGGA | 1 cut(s) | 272 |
| Ksp22I | TGATCA | 1 cut(s) | 2608 |
| KspAI | GTTAAC | 1 cut(s) | 1171 |
| LguI | GCTCTTC | 1 cut(s) | 1203 |
| LmnI | GCTCC | 3 cut(s) | 501, 753, 1096 |
| Lsp1109I | GCAGC | 6 cut(s) | 143, 2924, 2927, 3082, 3091, 3122 |
| LweI | GCATC | 8 cut(s) | 949, 1485, 1507, 1585, 2373, 2608, 3091, 3093 |
| MaeII | ACGT | 4 cut(s) | 14, 72, 372, 1561 |
| MaeIII | GTNAC | 6 cut(s) | 10, 68, 116, 586, 1142, 1886 |
| MflI | RGATCY | 4 cut(s) | 478, 905, 1938, 2809 |
| MhlI | GDGCHC | 3 cut(s) | 498, 579, 1101 |
| MlsI | TGGCCA | 1 cut(s) | 2254 |
| MluNI | TGGCCA | 1 cut(s) | 2254 |
| MlyI | GAGTC | 7 cut(s) | 94, 1198, 2080, 2320, 3026, 3041, 3101 |
| MmeI | TCCRAC | 8 cut(s) | 66, 247, 351, 376, 583, 1680, 2457, 2987 |
| Mox20I | TGGCCA | 1 cut(s) | 2254 |
| Mph1103I | ATGCAT | 4 cut(s) | 1500, 1653, 1714, 2601 |
| MroI | TCCGGA | 1 cut(s) | 272 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1530, 1782 |
| MscI | TGGCCA | 1 cut(s) | 2254 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1652, 2561, 3087 |
| Msp20I | TGGCCA | 1 cut(s) | 2254 |
| MspCI | CTTAAG | 2 cut(s) | 580, 2393 |
| MspI | CCGG | 3 cut(s) | 273, 434, 2678 |
| MspR9I | CCNGG | 3 cut(s) | 993, 2256, 2679 |
| Mva1269I | GAATGC | 2 cut(s) | 1437, 2832 |
| MvaI | CCWGG | 2 cut(s) | 993, 2256 |
| MvnI | CGCG | 1 cut(s) | 573 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 29, 473, 482, 2370, 2697, 3076, 3079, 3116 |
| NciI | CCSGG | 1 cut(s) | 2679 |
| NdeI | CATATG | 2 cut(s) | 668, 1653 |
| NlaIV | GGNNCC | 4 cut(s) | 152, 281, 2676, 2706 |
| NmuCI | GTSAC | 2 cut(s) | 68, 116 |
| NsbI | TGCGCA | 1 cut(s) | 1727 |
| NsiI | ATGCAT | 4 cut(s) | 1500, 1653, 1714, 2601 |
| NspI | RCATGY | 5 cut(s) | 1025, 1365, 1651, 2528, 3040 |
| NspV | TTCGAA | 2 cut(s) | 254, 747 |
| PaeI | GCATGC | 1 cut(s) | 1025 |
| PagI | TCATGA | 1 cut(s) | 297 |
| PceI | AGGCCT | 2 cut(s) | 1635, 2373 |
| PciI | ACATGT | 2 cut(s) | 2524, 3036 |
| PciSI | GCTCTTC | 1 cut(s) | 1203 |
| PctI | GAATGC | 2 cut(s) | 1437, 2832 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1530, 1782 |
| PfoI | TCCNGGA | 1 cut(s) | 991 |
| PkrI | GCNGC | 6 cut(s) | 133, 2914, 2917, 3072, 3081, 3112 |
| PleI | GAGTC | 7 cut(s) | 94, 1198, 2079, 2319, 3025, 3041, 3100 |
| PmaCI | CACGTG | 1 cut(s) | 373 |
| PmlI | CACGTG | 1 cut(s) | 373 |
| PpsI | GAGTC | 7 cut(s) | 94, 1198, 2079, 2319, 3025, 3041, 3100 |
| Ppu21I | YACGTR | 1 cut(s) | 373 |
| PscI | ACATGT | 2 cut(s) | 2524, 3036 |
| PsiI | TTATAA | 1 cut(s) | 1482 |
| Psp124BI | GAGCTC | 1 cut(s) | 1101 |
| Psp6I | CCWGG | 2 cut(s) | 991, 2254 |
| PspCI | CACGTG | 1 cut(s) | 373 |
| PspFI | CCCAGC | 1 cut(s) | 1809 |
| PspGI | CCWGG | 2 cut(s) | 991, 2254 |
| PspN4I | GGNNCC | 4 cut(s) | 152, 281, 2676, 2706 |
| PspPI | GGNCC | 3 cut(s) | 949, 1126, 2816 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 909, 941 |
| PstI | CTGCAG | 1 cut(s) | 3112 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1207 |
| PsuI | RGATCY | 4 cut(s) | 478, 905, 1938, 2809 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1652, 2561, 3087 |
| SacI | GAGCTC | 1 cut(s) | 1101 |
| SapI | GCTCTTC | 1 cut(s) | 1203 |
| SatI | GCNGC | 6 cut(s) | 132, 2913, 2916, 3071, 3080, 3111 |
| Sau96I | GGNCC | 3 cut(s) | 949, 1126, 2816 |
| ScaI | AGTACT | 2 cut(s) | 918, 2451 |
| SchI | GAGTC | 7 cut(s) | 94, 1198, 2080, 2320, 3026, 3041, 3101 |
| ScrFI | CCNGG | 3 cut(s) | 993, 2256, 2679 |
| SduI | GDGCHC | 3 cut(s) | 498, 579, 1101 |
| SfaNI | GCATC | 8 cut(s) | 949, 1485, 1507, 1585, 2373, 2608, 3091, 3093 |
| SfcI | CTRYAG | 1 cut(s) | 3108 |
| SfuI | TTCGAA | 2 cut(s) | 254, 747 |
| SinI | GGWCC | 1 cut(s) | 1126 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1652, 2561, 3087 |
| SmlI | CTYRAG | 5 cut(s) | 24, 79, 580, 1891, 2393 |
| SmoI | CTYRAG | 5 cut(s) | 24, 79, 580, 1891, 2393 |
| SphI | GCATGC | 1 cut(s) | 1025 |
| SseBI | AGGCCT | 2 cut(s) | 1635, 2373 |
| SsiI | CCGC | 4 cut(s) | 154, 509, 830, 2325 |
| SstI | GAGCTC | 1 cut(s) | 1101 |
| StuI | AGGCCT | 2 cut(s) | 1635, 2373 |
| StyD4I | CCNGG | 3 cut(s) | 991, 2254, 2677 |
| StyI | CCWWGG | 1 cut(s) | 2374 |
| TaaI | ACNGT | 5 cut(s) | 228, 1178, 1283, 2155, 2727 |
| TaiI | ACGT | 4 cut(s) | 17, 75, 375, 1564 |
| TatI | WGTACW | 8 cut(s) | 916, 964, 1597, 1756, 1867, 2408, 2449, 2565 |
| TscAI | CASTG | 7 cut(s) | 121, 1098, 1181, 1288, 2151, 2199, 2876 |
| TseFI | GTSAC | 2 cut(s) | 68, 116 |
| TseI | GCWGC | 6 cut(s) | 131, 2912, 2915, 3070, 3079, 3110 |
| Tsp45I | GTSAC | 2 cut(s) | 68, 116 |
| TspDTI | ATGAA | 9 cut(s) | 642, 751, 1076, 1791, 1928, 1977, 2064, 2253, 2274 |
| TspRI | CASTG | 7 cut(s) | 121, 1098, 1181, 1288, 2151, 2199, 2876 |
| Vha464I | CTTAAG | 2 cut(s) | 580, 2393 |
| VpaK11BI | GGWCC | 1 cut(s) | 1126 |
| XapI | RAATTY | 8 cut(s) | 606, 675, 780, 1070, 1342, 1681, 1745, 1817 |
| XbaI | TCTAGA | 2 cut(s) | 928, 2002 |
| XceI | RCATGY | 5 cut(s) | 1025, 1365, 1651, 2528, 3040 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2054 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1530, 1782 |
| ZrmI | AGTACT | 2 cut(s) | 918, 2451 |
| Zsp2I | ATGCAT | 4 cut(s) | 1500, 1653, 1714, 2601 |