FvH4_7g09800

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000036
Physical Location & Seq
Forward (+)
9363315 .. 9368825
5511 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g09800.t1

Sequence Viewer

Length: 3708 bp
ATGGCTCAAGAAAGCTCCTCTTCTAATGGTGGTGCTGCTCATAATTGTAGGTATCATGTGTTTTTGAGTTTCAGAGGTGAAGATACGCGGAAGACTTTCACCGACCACCTCTACACAGCCTTCAAGGATCAAGGCTTTCGCACTTTCCGAGATGACGAGGAACTTGAGAAAGGAGAAGATATTAATCCAGGCTTTGAGAAAGCCATTCAACAGTCAAGAAGTTCTGTTATTGTCTTCTCAAGTGATTACGCTTCTTCGAGCTGGTGCCTTAACGAGCTGCTGATGATACTTGAACGCAAGAGGACCTCAGATCATGTAGTTTTACCAGTCTTCTACAATGTGGATCCATCCCAAGTGAGGAAGCAGACGGGTAGTTTTGGGGAGGCATTCGGCAGACACCAAAACACTCAACCTTCGAACAAGGTTAAAGAATGGAAGGACGCACTTACAAAAGTTGCAGATCTTGGAGGGATGGTCTTGAGGAACCAAGATGATGGGTACGAGTCAAAATTTATCAAAACTATTGTTAAAGAGATAGGTGACAAGCTTAGTCGTACAGTACCACTAAGCGTTGGCACTAACCTGATTGGAATTCATGCTCGAGCCAACAAGATTAATCGATGGATACAAGATGGACCAAATGATGTCGGCATACATGTAATTTTTGGGATGTCTGGAATAGGGAAGACGACAGTTGCAAAACATGTCTATAATTCAAACTTCAGAAATTTCGAAGGAAGCAGCTTCATTGAAAATATCAGACAAACCTCAGATCAAATCAATGGCATTGTTAAATTACAAAAACAGCTCCTTCATGATATTTTGAATGGAAGAGAAGTAAGGATACGAAATTCTAGCGAAGGAAAATCTGCGATTGAAGATGCCATAAGCTGTAAAAGAATTCTTCTTGTTTTCGATGATGTGGATCATATGGATCAGTTTGATGCATTACTTACGATGAGAGATCGATTCCATAAAGGAAGTAAAATCATCATAACAACCAGGCGTGCATGGGTATTAAAGGCTCAAGGAATTACTAAGGTGCATTATGTTCGAGCTTTGAATGAAAGTGAATCTCTGACGCTCTTCAGTTTGCATGCTTTTCGACAAGAACATCCTATTGAAGGCTACATGGAACTGACTGAAAAATTTGTACGCCACTGTGCAGGGCTACCATTAGCTCTTCGAGTTTTGGGTTCTTCCCTATTCGGGGAAGATGTAGCTGTATGGGAGAGTGCATTAAGAAAAGTAGAATCTATCCCGAATAGTGAAATCGTGCATAAACTCAGAATGAGTTTTGATGCACTGGATAAACACGACCAGGAAGTGTTCCTCCACATCGCTTGTTTCTTTATTGGAAATGAGAAAGATTACACAGTTGACGTACTAGATGGATGTGAGTTCTATACAACTATTGGCATCATAAATCTCATTGATAGATGCTTAGTAGGAATTGGCGCCAATAACAAGCTGGTGATGCATGACATGGTTCGTGATATGGGAAGAGGAATTGTTCGCCTAGCAGCAGAGGAGCCTCGGAAGCGTAGTAGATTATGGCATCACAATGAATCTTTCAAAGTATTGAAAGAAAAGAATGGTACAAAAAAAATTGAGGGCCTTGAATTGAACATGCAAAGGCACCTGGGAGTCACTACTCCTTCAAAGAATTTGAATGAGATCATCTTGGAAACCAATGCATTTGCAAGGATGCACAAACTAAGACTGCTCCGGCTTAGTCATGTGAAACTCACTGGACGCTATGAAGAAATTCCTACAGGATTGAGAATGTTGTGTTGGATTGCATTTCCTTTGGATTCTATACCAAATGATTTTCATTTGGAGAACCTAGTTGTTCTGGAAATGCAGTATAGCAGCTTGAGACAAATCTTGAACGGAACGAAGTGTTTTCCATCTTTGAAGATCCTTGATCTCAGTCATTCTCATGGCCTTATTGCAACCGTCGACTTCTCTCGTTGTCCCAGTTTAGAGAAATTGACTCTCATGGATTGTGAAGGCTTGATTGATGTCCATGAATCCATTGGAAACCTAGACAGACTAGTTTATTTGAATATGAAAGATTGCAGAAGTCTTAGGAGGCTCCCAAAGACAATTGGTATGCTAAAGCTACTCGACACACTTCTTATATCTGGCTGCTCAAATCTTAACAACTCTTCAATAGAGATGATCAGAAGCATGGAATCGCTGAAAGTGCTTGAACTGGATAGAATTCCAATGAATCGATTATTCACACTCAGTGTGGAGGTGAAATCAGGGACTTATTTACCATGCTCTTTATTATCTTTAAGTCTTAGCGGGTGCAATCTCACTGATGAAGCTTTTCCTGTCGATTTTGCTAGCCTATCCTTATTGAAAAGTTTAAATCTAAGTGAGAATCCAATTTCTGGCCTCCCAAATTGCGTCAAGGGTCTGACAAGGCTAGAAAGACTCTCTCTCGAGAACTGTTTGAGCCTCAAATCCCTTGTAGAGCTACCAAAATTAGACCACATGATTGTATCCGGTTGCACAGCATTGGAAAGAATAACATACCAGTCAAGTTGGTGTGCCGGGCCTAACGCAAGTGGTAGGAACCACAGCCTAGTTGAGTGGGAATACCAATATAAGCTGGAACCGATTAGTAGTGTTGATGTTGAGATTCTTAATTTTCTGGGCTTGAGAAAATTGGACTTTGAAAATATGCCAGAGGTTCGGATGTGCAAACCATATCAAGGTTACGATATAATCCATCAGGGTGGAATCCAGGGACTGCATGAGTATGATTGTACAAGCTCGTATTTTTTTCGAGGAAGAAAGATAAATATGTTCAGCACATTTCTTCCTGGGAATGAGGTTCCAGGCCAATTTAGCCATAGATCAATTGACGGCTCCTCCTCAATATCATTAACTGTGCCCTTGCCTTCACTTAATGATGATCCCAGAATCCGAGGGTTTAACATCTTCATTGTCTATGCAGTTTCTGACAATGAGGATAAAAGATATTCTTCTAGTAATAACCAGGGTTCAATAACTATCAACGTCGTTAATGAGAGCAATGGTGACAACTGGCATTATGCACCAGTATATCATGGTGTTCCGGGCAAGGGAGAAGACATGATATGGTTAACCCATTGGAATATGCAGAATCAAGTAAAAGGTGGAGATCAAGTTGCTGTTTCACTCTCGCCAGAACATGTCAGGTTTCGGTATCAGGTTAAGGAGTGGGGGATCCAGGTTGTGCAGGAGAAGCAAATAGAGACCACTGGTGGAGATTTGTTAGCATCTGATGAGCCATTGAGGGGAGCAGATAAAGAAGGAGATTATGAAGAAGTGGTAGTGGATGATCCTATTCCAGCATCAGCAATGAGGGGTGGCGGCAACAACAACAACGATCAGGGCCTCAGAAGGTGGAAGGTGCTCATCATTTCCGCTATCGTCCTTTGTGCTGCCATCAGTGTTGCTCATCGTTTTGAGGACACTAATGTCGACACAAATGTAGCTAAAACTGTCACTAATGCAGACAATGAAGAACAACAACGGGATGAAGATGACAAGTTTGAAGTTGCCACTGACGGCAGAAACGACCGTGAACGGTGTCCCAGAAAGTGGAAGGTGCCCATCATCGCTGCTGTCATGTTAATTACATATCTATCTGTTGGCTGGTTCTTTTCCGCGAGAGACGTATACATGGAGTCCATTTTGGTTCCTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

1236

Amino Acids

139.55

Weight (kDa)

6.28

Isoelectric Point (pI)

37.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 18 - 197 4e-52 TIR domain
TIR_2 PF13676 20 - 116 2.6e-15 TIR domain
NB-ARC PF00931 203 - 371 5.2e-21 NB-ARC domain
WHD_ROQ1 PF23282 438 - 506 4.7e-17 Disease resistance protein Roq1-like, winged-helix domain
LRR_14 PF23598 632 - 741 5.2e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57630 AT1G72930 AT5G38344
fragaria_vesca FvH4_1g27020 FvH4_2g00931 FvH4_2g17330 FvH4_2g17330 FvH4_2g17340 FvH4_2g17350 FvH4_2g20690 FvH4_5g15301 FvH4_5g34194 FvH4_5g38530 FvH4_5g38740 FvH4_5g38740 FvH4_5g38740 FvH4_6g03800 FvH4_7g09791 FvH4_7g09800 FvH4_7g09800 FvH4_7g10510 FvH4_7g10520 FvH4_7g10520 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750
malus_domestica MD02G1217100.v1.1 MD02G1217200.v1.1 MD02G1217400.v1.1 MD02G1217600.v1.1 MD02G1264800.v1.1 MD02G1264900.v1.1 MD02G1302100.v1.1 MD04G1010700.v1.1 MD05G1006800.v1.1 MD05G1140100.v1.1 MD05G1140200.v1.1 MD05G1152200.v1.1 MD07G1073500.v1.1 MD07G1101700.v1.1 MD07G1102200.v1.1 MD07G1103200.v1.1 MD07G1112300.v1.1 MD08G1018200.v1.1 MD08G1018400.v1.1 MD08G1018800.v1.1 MD08G1019000.v1.1 MD08G1019100.v1.1 MD08G1019200.v1.1 MD08G1019300.v1.1 MD08G1019400.v1.1 MD08G1019600.v1.1 MD08G1019900.v1.1 MD08G1020000.v1.1 MD08G1020200.v1.1 MD08G1020500.v1.1 MD08G1020700.v1.1 MD08G1020800.v1.1 MD08G1040700.v1.1 MD11G1112400.v1.1 MD12G1068600.v1.1 MD12G1193200.v1.1 MD13G1050600.v1.1 MD15G1374900.v1.1 MD15G1375100.v1.1 MD15G1416500.v1.1 MD17G1072500.v1.1 MD17G1274200.v1.1 MD17G1274900.v1.1
prunus_persica Prupe.2G121000_v2.0.a1 Prupe.2G121000_v2.0.a1 Prupe.2G125800_v2.0.a1 Prupe.2G126000_v2.0.a1 Prupe.2G126100_v2.0.a1 Prupe.2G126200_v2.0.a1 Prupe.2G126300_v2.0.a1 Prupe.2G126400_v2.0.a1 Prupe.2G126500_v2.0.a1 Prupe.2G126600_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126800_v2.0.a1 Prupe.2G126900_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G135500_v2.0.a1 Prupe.2G135600_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.3G009800_v2.0.a1 Prupe.3G010200_v2.0.a1 Prupe.3G131000_v2.0.a1 Prupe.4G260800_v2.0.a1 Prupe.4G260900_v2.0.a1 Prupe.6G083100_v2.0.a1 Prupe.6G083200_v2.0.a1 Prupe.6G083400_v2.0.a1 Prupe.6G132100_v2.0.a1 Prupe.8G184900_v2.0.a1 Prupe.8G185200_v2.0.a1 Prupe.8G185300_v2.0.a1
pyrus_communis pycom02g17870 pycom02g17880 pycom02g19520 pycom02g22610 pycom02g22630 pycom02g22680 pycom05g13540 pycom05g14680 pycom07g04880 pycom07g04890 pycom07g05690 pycom07g05710 pycom07g05720 pycom07g05750 pycom07g05780 pycom07g06300 pycom07g08320 pycom07g08330 pycom07g08350 pycom07g08360 pycom07g08370 pycom07g08410 pycom07g08420 pycom07g08430 pycom07g08440 pycom07g08470 pycom07g08480 pycom07g08520 pycom07g08550 pycom07g08560 pycom07g08640 pycom07g08660 pycom07g08670 pycom07g08680 pycom07g08690 pycom07g08720 pycom07g08730 pycom07g08790 pycom07g08800 pycom07g08810 pycom07g08860 pycom07g08890 pycom07g09720 pycom08g01590 pycom08g01600 pycom08g01620 pycom08g01630 pycom08g01640 pycom10g12630 pycom15g16490 pycom17g07200 pycom17g07210 pycom17g07220 pycom17g11730 pycom17g11740 pycom17g27340 pycom17g27380
rosa_chinensis RchiOBHm_Chr1g0342571 RchiOBHm_Chr1g0346231 RchiOBHm_Chr1g0346831 RchiOBHm_Chr1g0346891 RchiOBHm_Chr1g0348311 RchiOBHm_Chr1g0348321 RchiOBHm_Chr1g0348331 RchiOBHm_Chr1g0348361 RchiOBHm_Chr1g0348371 RchiOBHm_Chr1g0348381 RchiOBHm_Chr1g0348401 RchiOBHm_Chr1g0348411 RchiOBHm_Chr1g0348421 RchiOBHm_Chr1g0348431 RchiOBHm_Chr2g0130881 RchiOBHm_Chr3g0487331 RchiOBHm_Chr5g0060371 RchiOBHm_Chr6g0246491 RchiOBHm_Chr6g0246871 RchiOBHm_Chr6g0250311 RchiOBHm_Chr6g0250781 RchiOBHm_Chr6g0251431 RchiOBHm_Chr6g0281871 RchiOBHm_Chr6g0281881 RchiOBHm_Chr6g0281931 RchiOBHm_Chr6g0281941 RchiOBHm_Chr6g0281951 RchiOBHm_Chr6g0281971 RchiOBHm_Chr6g0281981 RchiOBHm_Chr7g0240541 RchiOBHm_Chr7g0240631 RchiOBHm_Chr7g0240671
rosa_laevigata RLG00000000627 RLG00000000631 RLG00000000641 RLG00000000645 RLG00000000652 RLG00000000662 RLG00000000663 RLG00000000667 RLG00000000670 RLG00000000702 RLG00000001216 RLG00000001219 RLG00000007678 RLG00000012923 RLG00000012996 RLG00000013243 RLG00000017513 RLG00000017514 RLG00000020936 RLG00000022755 RLG00000023013 RLG00000028646 RLG00000028654 RLG00000028662 RLG00000028665 RLG00000028667 RLG00000028711 RLG00000028714 RLG00000028716 RLG00000028770 RLG00000028771 RLG00000028773 RLG00000028778 RLG00000028798 RLG00000028809 RLG00000028813 RLG00000029334 RLG00000030003 RLG00000033910 RLG00000034358 RLG00000035430
rosa_multiflora Rmu_co8031134.1_g000001 Rmu_co8092796.1_g000001 Rmu_co8130156.1_g000001 Rmu_co8325323.1_g000001 Rmu_co8424083.1_g000002 Rmu_sc0000008.1_g000003 Rmu_sc0000008.1_g000011 Rmu_sc0000008.1_g000015 Rmu_sc0000008.1_g000020 Rmu_sc0000091.1_g000015 Rmu_sc0000091.1_g000018 Rmu_sc0000091.1_g000029 Rmu_sc0000091.1_g000031 Rmu_sc0000391.1_g000004 Rmu_sc0001070.1_g000030 Rmu_sc0001293.1_g000016 Rmu_sc0001674.1_g000006 Rmu_sc0001731.1_g000002 Rmu_sc0001731.1_g000003 Rmu_sc0001731.1_g000005 Rmu_sc0001911.1_g000029 Rmu_sc0001913.1_g000038 Rmu_sc0001955.1_g000025 Rmu_sc0001992.1_g000022 Rmu_sc0001992.1_g000028 Rmu_sc0001992.1_g000031 Rmu_sc0002517.1_g000013 Rmu_sc0002517.1_g000017 Rmu_sc0002551.1_g000022 Rmu_sc0002551.1_g000029 Rmu_sc0002551.1_g000038 Rmu_sc0002705.1_g000015 Rmu_sc0002705.1_g000016 Rmu_sc0002882.1_g000055 Rmu_sc0003232.1_g000027 Rmu_sc0003363.1_g000037 Rmu_sc0003600.1_g000054 Rmu_sc0003918.1_g000011 Rmu_sc0004395.1_g000011 Rmu_sc0005071.1_g000004 Rmu_sc0005255.1_g000018 Rmu_sc0005327.1_g000004 Rmu_sc0005597.1_g000007 Rmu_sc0007060.1_g000007 Rmu_sc0007310.1_g000003 Rmu_sc0007383.1_g000014 Rmu_sc0007799.1_g000003 Rmu_sc0008477.1_g000016 Rmu_sc0010151.1_g000009 Rmu_sc0011217.1_g000005 Rmu_sc0016269.1_g000006 Rmu_sc0021495.1_g000001 Rmu_sc0027364.1_g000001 Rmu_sc0029432.1_g000001 Rmu_sc0041386.1_g000001 Rmu_ssc0000126.1_g000023 Rmu_ssc0000126.1_g000027
rosa_roxburghii Rroxscaffold_1G00006130 Rroxscaffold_1G00023320 Rroxscaffold_1G00038770 Rroxscaffold_2G00119800 Rroxscaffold_2G00121860 Rroxscaffold_3G00219780 Rroxscaffold_3G00219890 Rroxscaffold_4G00306740 Rroxscaffold_4G00306820 Rroxscaffold_4G00307000 Rroxscaffold_4G00307010 Rroxscaffold_4G00307020 Rroxscaffold_4G00308030 Rroxscaffold_4G00308070 Rroxscaffold_4G00308450 Rroxscaffold_4G00308460 Rroxscaffold_4G00315320 Rroxscaffold_5G00352470 Rroxscaffold_5G00371420 Rroxscaffold_6G00392300 Rroxscaffold_6G00394870 Rroxscaffold_6G00394890 Rroxscaffold_7G00186700 Rroxscaffold_7G00194980 Rroxscaffold_7G00216840
rosa_rugosa Rorug01G0076100 Rorug01G0128100 Rorug01G0149000.1 Rorug01G0149500.1 Rorug01G0180000 Rorug01G0180100 Rorug01G0182900 Rorug01G0184000 Rorug01G0184100 Rorug01G0184300 Rorug01G0184600 Rorug01G0184700 Rorug01G0184700 Rorug01G0184900 Rorug01G0185000 Rorug01G0185100 Rorug01G0189300 Rorug01G0194100 Rorug01G0194100 Rorug01G0194200 Rorug01G0194400 Rorug01G0194400 Rorug01G0194500 Rorug02G0090400 Rorug02G0090400 Rorug03G0233000 Rorug03G0233100 Rorug05G0178600 Rorug05G0178700 Rorug05G0579200 Rorug06G0144100 Rorug06G0144300 Rorug06G0144300 Rorug06G0179300 Rorug06G0208800 Rorug07G0323500 Rorug07G0337000
rosa_samantha Rh1AG046100 Rh1AG201400 Rh1AG201800 Rh1AG202100 Rh1AG202600 Rh1AG211500 Rh1AG211800 Rh1AG212200 Rh1AG212500 Rh1AG212600 Rh1AG214200 Rh1BG168000 Rh1BG168300 Rh1BG168500 Rh1BG177900 Rh1BG178200 Rh1BG178300 Rh1BG178800 Rh1BG178900 Rh1CG080900 Rh1CG183300 Rh1CG186300 Rh1CG186700 Rh1CG187000 Rh1CG187300 Rh1CG193400 Rh1CG195800 Rh1CG196000 Rh1CG196100 Rh1CG196400 Rh1CG196500 Rh1CG196800 Rh1CG198800 Rh1CG442600 Rh1DG086200 Rh1DG155400 Rh1DG156200 Rh1DG194000 Rh1DG194300 Rh1DG194900 Rh1DG197000 Rh1DG198800 Rh1DG199000 Rh1DG199200 Rh1DG202000 Rh1DG203900 Rh1DG207600 Rh1DG207900 Rh1DG208000 Rh1DG208500 Rh1DG208600 Rh1DG208700 Rh3CG339100 Rh5AG106500 Rh5AG264800 Rh5AG265300 Rh5CG302800 Rh5DG277900 Rh6AG257600 Rh6AG257700 Rh6BG260500 Rh6BG260700 Rh6CG259600 Rh6CG259700 Rh6DG252100 Rh7DG126900
rosa_wichuraiana Rw0G005780 Rw0G007540 Rw0G007550 Rw0G007560 Rw0G009390 Rw1G016900 Rw1G016930 Rw1G016940 Rw1G016970 Rw1G017860 Rw1G017890 Rw1G017900 Rw1G017910 Rw1G017920 Rw1G017960 Rw1G017970 Rw1G017980 Rw1G018150 Rw4G000830 Rw5G009290 Rw5G018950 Rw5G024850 Rw5G024870 Rw5G040460 Rw6G022290 Rw7G041020 Rw7G041200 Rw7G041360 Rw7G041450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 3476
AccB1I GGYRCC 4 cut(s) 264, 1457, 1638, 3607
AccB7I CCANNNNNTGG 2 cut(s) 2402, 3600
AccI GTMKAC 3 cut(s) 1962, 3480, 3678
AccII CGCG 2 cut(s) 88, 3668
AciI CCGC 5 cut(s) 88, 2313, 3369, 3423, 3666
AcsI RAATTY 9 cut(s) 509, 591, 727, 850, 900, 1148, 1666, 1767, 2226
AcuI CTGAAG 2 cut(s) 706, 1072
AcyI GRCGYC 1 cut(s) 1458
AdeI CACNNNGTG 1 cut(s) 2255
AfaI GTAC 7 cut(s) 500, 556, 561, 1155, 1386, 1600, 2782
AfiI CCNNNNNNNGG 9 cut(s) 357, 1124, 1209, 1210, 2402, 2726, 3098, 3293, 3600
AflIII ACRYGT 3 cut(s) 655, 703, 3187
AhlI ACTAGT 1 cut(s) 2056
AjnI CCWGG 9 cut(s) 187, 1001, 1320, 1641, 2757, 2836, 2851, 3012, 3225
AjuI GAANNNNNNNTTGG 2 cut(s) 1777, 1809
Alw21I GWGCWC 1 cut(s) 3414
Alw26I GTCTC 3 cut(s) 1873, 3245, 3666
AlwNI CAGNNNCTG 2 cut(s) 2764, 2975
Ama87I CYCGRG 2 cut(s) 600, 2453
AoxI GGCC 6 cut(s) 1615, 1945, 2404, 2567, 2854, 3391
ApeKI GCWGC 8 cut(s) 35, 277, 741, 1523, 1872, 2151, 3440, 3620
ApoI RAATTY 9 cut(s) 509, 591, 727, 850, 900, 1148, 1666, 1767, 2226
AseI ATTAAT 2 cut(s) 183, 615
Asp700I GAANNNNTTC 3 cut(s) 95, 1767, 2337
AspLEI GCGC 1 cut(s) 1460
AspS9I GGNCC 5 cut(s) 303, 635, 1615, 2567, 3391
AsuC2I CCSGG 2 cut(s) 2566, 3093
AsuHPI GGTGA 6 cut(s) 89, 91, 551, 1486, 2275, 3065
AsuII TTCGAA 2 cut(s) 416, 732
AsuNHI GCTAGC 1 cut(s) 2354
AvaI CYCGRG 2 cut(s) 600, 2453
AvaII GGWCC 2 cut(s) 303, 635
BaeGI GKGCMC 2 cut(s) 2910, 3612
BamHI GGATCC 2 cut(s) 343, 3222
BanI GGYRCC 4 cut(s) 264, 1457, 1638, 3607
BarI GAAGNNNNNNTAC 2 cut(s) 828, 860
BbsI GAAGAC 5 cut(s) 98, 226, 322, 692, 3111
Bbv12I GWGCWC 1 cut(s) 3414
BbvI GCAGC 8 cut(s) 22, 264, 753, 1535, 1884, 2138, 3427, 3607
BceAI ACGGC 2 cut(s) 2896, 3583
BcgI CGANNNNNNTGC 4 cut(s) 1034, 1068, 1085, 1119
BciT130I CCWGG 9 cut(s) 189, 1003, 1322, 1643, 2759, 2838, 2853, 3014, 3227
BciVI GTATCC 3 cut(s) 618, 837, 2524
BclI TGATCA 1 cut(s) 2184
BcnI CCSGG 2 cut(s) 2566, 3093
BcoDI GTCTC 3 cut(s) 1873, 3245, 3666
BcuI ACTAGT 1 cut(s) 2056
BfmI CTRYAG 1 cut(s) 1773
BfoI RGCGCY 1 cut(s) 1461
BfuI GTATCC 3 cut(s) 618, 837, 2524
BglII AGATCT 1 cut(s) 460
BisI GCNGC 9 cut(s) 36, 278, 742, 1524, 1873, 2152, 3370, 3441, 3621
BlsI GCNGC 9 cut(s) 37, 279, 743, 1525, 1874, 2153, 3371, 3442, 3622
Bme18I GGWCC 2 cut(s) 303, 635
BmeT110I CYCGRG 2 cut(s) 600, 2453
BmgT120I GGNCC 5 cut(s) 303, 635, 1615, 2567, 3391
BmrI ACTGGG 1 cut(s) 1974
BmtI GCTAGC 1 cut(s) 2358
BmuI ACTGGG 1 cut(s) 1974
BpiI GAAGAC 5 cut(s) 98, 226, 322, 692, 3111
Bpu14I TTCGAA 2 cut(s) 416, 732
BpuEI CTTGAG 6 cut(s) 185, 223, 499, 1011, 1897, 2692
BpuMI CCSGG 2 cut(s) 2566, 3093
Bsa29I ATCGAT 3 cut(s) 619, 967, 2239
BsaBI GATNNNNATC 2 cut(s) 183, 924
BsaHI GRCGYC 1 cut(s) 1458
BsaI GGTCTC 1 cut(s) 3245
BsaJI CCNNGG 6 cut(s) 1535, 1642, 2758, 2837, 2941, 3013
BsaWI WCCGGW 1 cut(s) 2516
BsaXI ACNNNNNCTCC 6 cut(s) 459, 489, 2870, 2900, 3147, 3177
Bsc4I CCNNNNNNNGG 9 cut(s) 357, 1124, 1209, 1210, 2402, 2726, 3098, 3293, 3600
Bse1I ACTGG 9 cut(s) 326, 1311, 1756, 1980, 2223, 2548, 3065, 3074, 3262
Bse3DI GCAATG 2 cut(s) 3055, 3363
Bse8I GATNNNNATC 2 cut(s) 183, 924
BseBI CCWGG 9 cut(s) 189, 1003, 1322, 1643, 2759, 2838, 2853, 3014, 3227
BseCI ATCGAT 3 cut(s) 619, 967, 2239
BseDI CCNNGG 6 cut(s) 1535, 1642, 2758, 2837, 2941, 3013
BseGI GGATG 9 cut(s) 347, 477, 675, 1114, 1400, 1713, 2715, 3340, 3541
BseJI GATNNNNATC 2 cut(s) 183, 924
BseLI CCNNNNNNNGG 9 cut(s) 357, 1124, 1209, 1210, 2402, 2726, 3098, 3293, 3600
BseMI GCAATG 2 cut(s) 3055, 3363
BseMII CTCAG 6 cut(s) 321, 783, 1300, 1945, 2266, 3409
BseNI ACTGG 9 cut(s) 326, 1311, 1756, 1980, 2223, 2548, 3065, 3074, 3262
BseRI GAGGAG 4 cut(s) 7, 1544, 2875, 2878
BseSI GKGCMC 2 cut(s) 2910, 3612
BseXI GCAGC 8 cut(s) 22, 264, 753, 1535, 1884, 2138, 3427, 3607
BsgI GTGCAG 2 cut(s) 1185, 3254
Bsh1236I CGCG 2 cut(s) 88, 3668
Bsh1285I CGRYCG 1 cut(s) 3580
BshFI GGCC 6 cut(s) 1617, 1947, 2406, 2569, 2856, 3393
BshNI GGYRCC 4 cut(s) 264, 1457, 1638, 3607
BshVI ATCGAT 3 cut(s) 619, 967, 2239
BsiEI CGRYCG 1 cut(s) 3580
BsiHKAI GWGCWC 1 cut(s) 3414
BsiHKCI CYCGRG 2 cut(s) 600, 2453
BsiSI CCGG 4 cut(s) 1729, 2517, 2565, 3092
BslFI GGGAC 4 cut(s) 1962, 2287, 2775, 3576
BslI CCNNNNNNNGG 9 cut(s) 357, 1124, 1209, 1210, 2402, 2726, 3098, 3293, 3600
BsmAI GTCTC 3 cut(s) 1873, 3245, 3666
BsmBI CGTCTC 1 cut(s) 3666
BsmFI GGGAC 4 cut(s) 1962, 2287, 2775, 3576
BsmI GAATGC 1 cut(s) 386
BsnI GGCC 6 cut(s) 1617, 1947, 2406, 2569, 2856, 3393
Bso31I GGTCTC 1 cut(s) 3245
BsoBI CYCGRG 2 cut(s) 600, 2453
Bsp119I TTCGAA 2 cut(s) 416, 732
Bsp1286I GDGCHC 3 cut(s) 2910, 3414, 3612
Bsp1407I TGTACA 1 cut(s) 2780
BspACI CCGC 5 cut(s) 88, 2313, 3369, 3423, 3666
BspANI GGCC 6 cut(s) 1617, 1947, 2406, 2569, 2856, 3393
BspCNI CTCAG 6 cut(s) 320, 782, 1299, 1944, 2265, 3408
BspDI ATCGAT 3 cut(s) 619, 967, 2239
BspFNI CGCG 2 cut(s) 88, 3668
BspHI TCATGA 1 cut(s) 814
BspOI GCTAGC 1 cut(s) 2358
BspQI GCTCTTC 2 cut(s) 1091, 1188
BspT104I TTCGAA 2 cut(s) 416, 732
BspT107I GGYRCC 4 cut(s) 264, 1457, 1638, 3607
BspTNI GGTCTC 1 cut(s) 3245
BsrDI GCAATG 2 cut(s) 3055, 3363
BsrGI TGTACA 1 cut(s) 2780
BsrI ACTGG 9 cut(s) 326, 1311, 1756, 1980, 2223, 2548, 3065, 3074, 3262
BssECI CCNNGG 6 cut(s) 1535, 1642, 2758, 2837, 2941, 3013
BssNAI GTATAC 1 cut(s) 3679
BssNI GRCGYC 1 cut(s) 1458
Bst1107I GTATAC 1 cut(s) 3679
Bst2UI CCWGG 9 cut(s) 189, 1003, 1322, 1643, 2759, 2838, 2853, 3014, 3227
Bst6I CTCTTC 6 cut(s) 25, 826, 1091, 1188, 1498, 2176
BstACI GRCGYC 1 cut(s) 1458
BstAUI TGTACA 1 cut(s) 2780
BstBI TTCGAA 2 cut(s) 416, 732
BstC8I GCNNGC 3 cut(s) 1008, 1098, 2356
BstENI CCTNNNNNAGG 1 cut(s) 1122
BstF5I GGATG 9 cut(s) 347, 477, 675, 1114, 1400, 1713, 2715, 3340, 3541
BstFNI CGCG 2 cut(s) 88, 3668
BstH2I RGCGCY 1 cut(s) 1461
BstHHI GCGC 1 cut(s) 1460
BstMAI GTCTC 3 cut(s) 1873, 3245, 3666
BstMCI CGRYCG 1 cut(s) 3580
BstMWI GCNNNNNNNGC 5 cut(s) 1477, 1540, 2209, 2862, 3241
BstNI CCWGG 9 cut(s) 189, 1003, 1322, 1643, 2759, 2838, 2853, 3014, 3227
BstNSI RCATGY 5 cut(s) 659, 707, 1100, 1633, 3191
BstSFI CTRYAG 1 cut(s) 1773
BstSLI GKGCMC 2 cut(s) 2910, 3612
BstUI CGCG 2 cut(s) 88, 3668
BstV1I GCAGC 8 cut(s) 22, 264, 753, 1535, 1884, 2138, 3427, 3607
BstV2I GAAGAC 5 cut(s) 98, 226, 322, 692, 3111
BstX2I RGATCY 4 cut(s) 343, 460, 1920, 3222
BstXI CCANNNNNNTGG 2 cut(s) 494, 2750
BstYI RGATCY 4 cut(s) 343, 460, 1920, 3222
BstZ17I GTATAC 1 cut(s) 3679
Bsu15I ATCGAT 3 cut(s) 619, 967, 2239
BsuI GTATCC 3 cut(s) 618, 837, 2524
BsuRI GGCC 6 cut(s) 1617, 1947, 2406, 2569, 2856, 3393
BsuTUI ATCGAT 3 cut(s) 619, 967, 2239
BtgZI GCGATG 2 cut(s) 1324, 3601
BtsCI GGATG 9 cut(s) 347, 477, 675, 1114, 1400, 1713, 2715, 3340, 3541
BtsIMutI CAGTG 8 cut(s) 1159, 1304, 1749, 2260, 2325, 3255, 3454, 3561
Cac8I GCNNGC 3 cut(s) 1008, 1098, 2356
CaiI CAGNNNCTG 2 cut(s) 2764, 2975
CciI TCATGA 1 cut(s) 814
CfoI GCGC 1 cut(s) 1460
Cfr13I GGNCC 5 cut(s) 303, 635, 1615, 2567, 3391
ClaI ATCGAT 3 cut(s) 619, 967, 2239
CseI GACGC 4 cut(s) 449, 1090, 1764, 2407
Csp6I GTAC 7 cut(s) 499, 555, 560, 1154, 1385, 1599, 2781
CspCI CAANNNNNGTGG 2 cut(s) 1325, 1360
CviQI GTAC 7 cut(s) 499, 555, 560, 1154, 1385, 1599, 2781
DinI GGCGCC 1 cut(s) 1459
DraI TTTAAA 1 cut(s) 2379
DraIII CACNNNGTG 1 cut(s) 2255
DrdI GACNNNNNNGTC 1 cut(s) 3476
DseDI GACNNNNNNGTC 1 cut(s) 3476
Eam1104I CTCTTC 6 cut(s) 25, 826, 1091, 1188, 1498, 2176
EarI CTCTTC 6 cut(s) 25, 826, 1091, 1188, 1498, 2176
Eco31I GGTCTC 1 cut(s) 3245
Eco47I GGWCC 2 cut(s) 303, 635
Eco57I CTGAAG 2 cut(s) 706, 1072
Eco88I CYCGRG 2 cut(s) 600, 2453
EcoNI CCTNNNNNAGG 1 cut(s) 1122
EcoO109I RGGNCCY 3 cut(s) 303, 1615, 3391
EcoRI GAATTC 3 cut(s) 591, 900, 2226
EcoRII CCWGG 9 cut(s) 187, 1001, 1320, 1641, 2757, 2836, 2851, 3012, 3225
EcoT22I ATGCAT 3 cut(s) 949, 1482, 1699
EgeI GGCGCC 1 cut(s) 1459
EheI GGCGCC 1 cut(s) 1459
Esp3I CGTCTC 1 cut(s) 3666
FalI AAGNNNNNCTT 3 cut(s) 36, 2983, 3015
FaqI GGGAC 4 cut(s) 1962, 2287, 2775, 3576
FauI CCCGC 1 cut(s) 2306
FauNDI CATATG 1 cut(s) 930
FbaI TGATCA 1 cut(s) 2184
FblI GTMKAC 3 cut(s) 1962, 3480, 3678
Fnu4HI GCNGC 9 cut(s) 36, 278, 742, 1524, 1873, 2152, 3370, 3441, 3621
FokI GGATG 9 cut(s) 334, 484, 682, 1101, 1407, 1720, 2722, 3347, 3548
Fsp4HI GCNGC 9 cut(s) 36, 278, 742, 1524, 1873, 2152, 3370, 3441, 3621
GlaI GCGC 1 cut(s) 1459
GluI GCNGC 9 cut(s) 36, 278, 742, 1524, 1873, 2152, 3370, 3441, 3621
HaeII RGCGCY 1 cut(s) 1461
HaeIII GGCC 6 cut(s) 1617, 1947, 2406, 2569, 2856, 3393
HapII CCGG 4 cut(s) 1729, 2517, 2565, 3092
HgaI GACGC 4 cut(s) 449, 1090, 1764, 2407
HhaI GCGC 1 cut(s) 1460
Hin1I GRCGYC 1 cut(s) 1458
Hin6I GCGC 1 cut(s) 1458
HinP1I GCGC 1 cut(s) 1458
HincII GTYRAC 4 cut(s) 1381, 1963, 3120, 3481
HindII GTYRAC 4 cut(s) 1381, 1963, 3120, 3481
HindIII AAGCTT 2 cut(s) 545, 2334
HpaI GTTAAC 1 cut(s) 3120
HpaII CCGG 4 cut(s) 1729, 2517, 2565, 3092
HphI GGTGA 6 cut(s) 89, 91, 551, 1486, 2275, 3065
Hpy166II GTNNAC 6 cut(s) 1381, 1963, 3120, 3481, 3584, 3679
Hpy8I GTNNAC 6 cut(s) 1381, 1963, 3120, 3481, 3584, 3679
Hpy99I CGWCG 2 cut(s) 1964, 3038
HpyCH4IV ACGT 3 cut(s) 1383, 3033, 3675
HpyF10VI GCNNNNNNNGC 5 cut(s) 1477, 1540, 2209, 2862, 3241
HpySE526I ACGT 3 cut(s) 1383, 3033, 3675
Hsp92I GRCGYC 1 cut(s) 1458
HspAI GCGC 1 cut(s) 1458
KasI GGCGCC 1 cut(s) 1457
Ksp22I TGATCA 1 cut(s) 2184
KspAI GTTAAC 1 cut(s) 3120
LguI GCTCTTC 2 cut(s) 1091, 1188
LmnI GCTCC 7 cut(s) 20, 813, 1531, 1731, 2103, 2888, 3296
Lsp1109I GCAGC 8 cut(s) 22, 264, 753, 1535, 1884, 2138, 3427, 3607
MaeII ACGT 3 cut(s) 1383, 3033, 3675
MaeIII GTNAC 5 cut(s) 539, 1648, 2729, 3053, 3502
MfeI CAATTG 2 cut(s) 2109, 2874
MflI RGATCY 4 cut(s) 343, 460, 1920, 3222
MhlI GDGCHC 3 cut(s) 2910, 3414, 3612
Mly113I GGCGCC 1 cut(s) 1458
MlyI GAGTC 5 cut(s) 512, 1656, 1990, 2439, 3695
MmeI TCCRAC 1 cut(s) 1775
Mph1103I ATGCAT 3 cut(s) 949, 1482, 1699
MroXI GAANNNNTTC 3 cut(s) 95, 1767, 2337
MslI CAYNNNNRTG 4 cut(s) 1563, 1941, 2748, 2772
MspI CCGG 4 cut(s) 1729, 2517, 2565, 3092
MunI CAATTG 2 cut(s) 2109, 2874
Mva1269I GAATGC 1 cut(s) 386
MvaI CCWGG 9 cut(s) 189, 1003, 1322, 1643, 2759, 2838, 2853, 3014, 3227
MvnI CGCG 2 cut(s) 88, 3668
MwoI GCNNNNNNNGC 5 cut(s) 1477, 1540, 2209, 2862, 3241
NarI GGCGCC 1 cut(s) 1458
NciI CCSGG 2 cut(s) 2566, 3093
NdeI CATATG 1 cut(s) 930
NheI GCTAGC 1 cut(s) 2354
NmuCI GTSAC 4 cut(s) 539, 1648, 3053, 3502
NsiI ATGCAT 3 cut(s) 949, 1482, 1699
NspI RCATGY 5 cut(s) 659, 707, 1100, 1633, 3191
NspV TTCGAA 2 cut(s) 416, 732
PaeI GCATGC 1 cut(s) 1100
PaeR7I CTCGAG 2 cut(s) 600, 2453
PagI TCATGA 1 cut(s) 814
PciI ACATGT 3 cut(s) 655, 703, 3187
PciSI GCTCTTC 2 cut(s) 1091, 1188
PcsI WCGNNNNNNNCGW 2 cut(s) 145, 3573
PctI GAATGC 1 cut(s) 386
PdmI GAANNNNTTC 3 cut(s) 95, 1767, 2337
PflMI CCANNNNNTGG 2 cut(s) 2402, 3600
PkrI GCNGC 9 cut(s) 37, 279, 743, 1525, 1874, 2153, 3371, 3442, 3622
PleI GAGTC 5 cut(s) 511, 1655, 1990, 2439, 3694
PluTI GGCGCC 1 cut(s) 1461
PpsI GAGTC 5 cut(s) 511, 1655, 1990, 2439, 3694
PpuMI RGGWCCY 1 cut(s) 303
PscI ACATGT 3 cut(s) 655, 703, 3187
PshBI ATTAAT 2 cut(s) 183, 615
Psp5II RGGWCCY 1 cut(s) 303
Psp6I CCWGG 9 cut(s) 187, 1001, 1320, 1641, 2757, 2836, 2851, 3012, 3225
PspGI CCWGG 9 cut(s) 187, 1001, 1320, 1641, 2757, 2836, 2851, 3012, 3225
PspPI GGNCC 5 cut(s) 303, 635, 1615, 2567, 3391
PspPPI RGGWCCY 1 cut(s) 303
PspXI VCTCGAGB 1 cut(s) 600
PstNI CAGNNNCTG 2 cut(s) 2764, 2975
PsuI RGATCY 4 cut(s) 343, 460, 1920, 3222
RsaI GTAC 7 cut(s) 500, 556, 561, 1155, 1386, 1600, 2782
RsaNI GTAC 7 cut(s) 499, 555, 560, 1154, 1385, 1599, 2781
RseI CAYNNNNRTG 4 cut(s) 1563, 1941, 2748, 2772
SalI GTCGAC 2 cut(s) 1961, 3479
SapI GCTCTTC 2 cut(s) 1091, 1188
SatI GCNGC 9 cut(s) 36, 278, 742, 1524, 1873, 2152, 3370, 3441, 3621
Sau96I GGNCC 5 cut(s) 303, 635, 1615, 2567, 3391
SchI GAGTC 5 cut(s) 512, 1656, 1990, 2439, 3695
SduI GDGCHC 3 cut(s) 2910, 3414, 3612
SfcI CTRYAG 1 cut(s) 1773
SfoI GGCGCC 1 cut(s) 1459
Sfr274I CTCGAG 2 cut(s) 600, 2453
SfuI TTCGAA 2 cut(s) 416, 732
SinI GGWCC 2 cut(s) 303, 635
SlaI CTCGAG 2 cut(s) 600, 2453
SmiMI CAYNNNNRTG 4 cut(s) 1563, 1941, 2748, 2772
SmlI CTYRAG 9 cut(s) 6, 164, 238, 478, 600, 1026, 1876, 2453, 2671
SmoI CTYRAG 9 cut(s) 6, 164, 238, 478, 600, 1026, 1876, 2453, 2671
SpeI ACTAGT 1 cut(s) 2056
SphI GCATGC 1 cut(s) 1100
SsiI CCGC 5 cut(s) 88, 2313, 3369, 3423, 3666
SspDI GGCGCC 1 cut(s) 1457
TaiI ACGT 3 cut(s) 1386, 3036, 3678
TatI WGTACW 1 cut(s) 2780
TauI GCSGC 1 cut(s) 3372
TscAI CASTG 8 cut(s) 1166, 1311, 1756, 2260, 2332, 3262, 3454, 3568
TseFI GTSAC 4 cut(s) 539, 1648, 3053, 3502
TseI GCWGC 8 cut(s) 35, 277, 741, 1523, 1872, 2151, 3440, 3620
Tsp45I GTSAC 4 cut(s) 539, 1648, 3053, 3502
TspGWI ACGGA 1 cut(s) 1908
TspRI CASTG 8 cut(s) 1166, 1311, 1756, 2260, 2332, 3262, 3454, 3568
Van91I CCANNNNNTGG 2 cut(s) 2402, 3600
VpaK11BI GGWCC 2 cut(s) 303, 635
VspI ATTAAT 2 cut(s) 183, 615
XagI CCTNNNNNAGG 1 cut(s) 1122
XapI RAATTY 9 cut(s) 509, 591, 727, 850, 900, 1148, 1666, 1767, 2226
XceI RCATGY 5 cut(s) 659, 707, 1100, 1633, 3191
XcmI CCANNNNNNNNNTGG 2 cut(s) 1468, 2036
XhoI CTCGAG 2 cut(s) 600, 2453
XmiI GTMKAC 3 cut(s) 1962, 3480, 3678
XmnI GAANNNNTTC 3 cut(s) 95, 1767, 2337
Zsp2I ATGCAT 3 cut(s) 949, 1482, 1699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.