TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 13 - 196 | 9.2e-49 | TIR domain |
| TIR_2 | PF13676 | 15 - 118 | 8.1e-16 | TIR domain |
| NB-ARC | PF00931 | 201 - 367 | 5.8e-20 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 438 - 504 | 6.1e-17 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 646 - 738 | 6.7e-08 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1041, 2135 |
| Acc16I | TGCGCA | 1 cut(s) | 182 |
| Acc36I | ACCTGC | 2 cut(s) | 2586, 2884 |
| AccB1I | GGYRCC | 1 cut(s) | 249 |
| AccII | CGCG | 1 cut(s) | 236 |
| AciI | CCGC | 1 cut(s) | 1158 |
| AclWI | GGATC | 9 cut(s) | 265, 341, 354, 927, 1523, 1536, 1842, 2789, 2802 |
| AcoI | YGGCCR | 1 cut(s) | 301 |
| AcsI | RAATTY | 3 cut(s) | 591, 718, 1397 |
| AcuI | CTGAAG | 6 cut(s) | 39, 115, 192, 1066, 1094, 2198 |
| AcyI | GRCGYC | 1 cut(s) | 560 |
| AfaI | GTAC | 8 cut(s) | 98, 1149, 1674, 1737, 1801, 2005, 2242, 2636 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 360, 409, 439, 1118, 1978, 2513 |
| AflII | CTTAAG | 1 cut(s) | 565 |
| AflIII | ACRYGT | 1 cut(s) | 234 |
| AgeI | ACCGGT | 1 cut(s) | 328 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 235, 375 |
| AhlI | ACTAGT | 1 cut(s) | 2050 |
| AjnI | CCWGG | 4 cut(s) | 1531, 2121, 2447, 2848 |
| Alw21I | GWGCWC | 2 cut(s) | 2150, 2780 |
| Alw26I | GTCTC | 3 cut(s) | 300, 2041, 2447 |
| AlwI | GGATC | 9 cut(s) | 265, 341, 354, 927, 1523, 1536, 1842, 2789, 2802 |
| Ama87I | CYCGRG | 1 cut(s) | 600 |
| AoxI | GGCC | 2 cut(s) | 301, 2611 |
| ApeKI | GCWGC | 5 cut(s) | 178, 443, 741, 2997, 3000 |
| ApoI | RAATTY | 3 cut(s) | 591, 718, 1397 |
| AsiGI | ACCGGT | 1 cut(s) | 328 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 80, 595, 1079, 1251, 1761 |
| AspA2I | CCTAGG | 2 cut(s) | 863, 2357 |
| AspLEI | GCGC | 3 cut(s) | 183, 282, 885 |
| AspS9I | GGNCC | 2 cut(s) | 928, 1915 |
| AsuC2I | CCSGG | 2 cut(s) | 300, 972 |
| AsuHPI | GGTGA | 7 cut(s) | 76, 1274, 2437, 2539, 2675, 2854, 2987 |
| AvaI | CYCGRG | 1 cut(s) | 600 |
| AvaII | GGWCC | 2 cut(s) | 928, 1915 |
| AvrII | CCTAGG | 2 cut(s) | 863, 2357 |
| BaeGI | GKGCMC | 1 cut(s) | 504 |
| BamHI | GGATCC | 3 cut(s) | 346, 1528, 2794 |
| BanI | GGYRCC | 1 cut(s) | 249 |
| BanII | GRGCYC | 2 cut(s) | 2253, 2365 |
| BauI | CACGAG | 1 cut(s) | 503 |
| BbsI | GAAGAC | 4 cut(s) | 72, 83, 692, 1157 |
| Bbv12I | GWGCWC | 2 cut(s) | 2150, 2780 |
| BbvI | GCAGC | 5 cut(s) | 165, 455, 753, 2987, 3009 |
| BceAI | ACGGC | 1 cut(s) | 117 |
| BciT130I | CCWGG | 4 cut(s) | 1533, 2123, 2449, 2850 |
| BciVI | GTATCC | 1 cut(s) | 2775 |
| BclI | TGATCA | 2 cut(s) | 2673, 2977 |
| BcnI | CCSGG | 2 cut(s) | 300, 972 |
| BcoDI | GTCTC | 3 cut(s) | 300, 2041, 2447 |
| BcuI | ACTAGT | 1 cut(s) | 2050 |
| BfmI | CTRYAG | 4 cut(s) | 1560, 1861, 2066, 3001 |
| BfrI | CTTAAG | 1 cut(s) | 565 |
| BfuAI | ACCTGC | 2 cut(s) | 2586, 2884 |
| BfuI | GTATCC | 1 cut(s) | 2775 |
| BglII | AGATCT | 3 cut(s) | 14, 291, 463 |
| BisI | GCNGC | 5 cut(s) | 179, 444, 742, 2998, 3001 |
| BlnI | CCTAGG | 2 cut(s) | 863, 2357 |
| BlpI | GCTNAGC | 1 cut(s) | 2370 |
| BlsI | GCNGC | 5 cut(s) | 180, 445, 743, 2999, 3002 |
| BmcAI | AGTACT | 2 cut(s) | 1674, 2242 |
| Bme1390I | CCNGG | 6 cut(s) | 300, 972, 1533, 2123, 2449, 2850 |
| Bme18I | GGWCC | 2 cut(s) | 928, 1915 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 235, 375 |
| BmeT110I | CYCGRG | 1 cut(s) | 600 |
| BmgT120I | GGNCC | 2 cut(s) | 928, 1915 |
| BmiI | GGNNCC | 4 cut(s) | 251, 348, 1530, 2796 |
| BmrFI | CCNGG | 6 cut(s) | 300, 972, 1533, 2123, 2449, 2850 |
| BpiI | GAAGAC | 4 cut(s) | 72, 83, 692, 1157 |
| BpmI | CTGGAG | 2 cut(s) | 1706, 2756 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2370 |
| BpuEI | CTTGAG | 5 cut(s) | 70, 170, 275, 296, 770 |
| BpuMI | CCSGG | 2 cut(s) | 300, 972 |
| BsaBI | GATNNNNATC | 4 cut(s) | 345, 918, 2022, 2334 |
| BsaHI | GRCGYC | 1 cut(s) | 560 |
| BsaI | GGTCTC | 2 cut(s) | 300, 2447 |
| BsaWI | WCCGGW | 1 cut(s) | 328 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 360, 409, 439, 1118, 1978, 2513 |
| Bse118I | RCCGGY | 1 cut(s) | 328 |
| Bse1I | ACTGG | 2 cut(s) | 1750, 2168 |
| Bse3DI | GCAATG | 1 cut(s) | 2611 |
| Bse8I | GATNNNNATC | 4 cut(s) | 345, 918, 2022, 2334 |
| BseBI | CCWGG | 4 cut(s) | 1533, 2123, 2449, 2850 |
| BseGI | GGATG | 7 cut(s) | 239, 967, 1397, 1555, 1636, 1707, 1754 |
| BseJI | GATNNNNATC | 4 cut(s) | 345, 918, 2022, 2334 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 360, 409, 439, 1118, 1978, 2513 |
| BseMI | GCAATG | 1 cut(s) | 2611 |
| BseMII | CTCAG | 5 cut(s) | 136, 350, 1939, 2576, 2597 |
| BseNI | ACTGG | 2 cut(s) | 1750, 2168 |
| BseRI | GAGGAG | 1 cut(s) | 272 |
| BseSI | GKGCMC | 1 cut(s) | 504 |
| BseX3I | CGGCCG | 1 cut(s) | 301 |
| BseXI | GCAGC | 5 cut(s) | 165, 455, 753, 2987, 3009 |
| BseYI | CCCAGC | 1 cut(s) | 1817 |
| BsgI | GTGCAG | 2 cut(s) | 52, 1490 |
| Bsh1236I | CGCG | 1 cut(s) | 236 |
| Bsh1285I | CGRYCG | 1 cut(s) | 304 |
| BshFI | GGCC | 2 cut(s) | 303, 2613 |
| BshNI | GGYRCC | 1 cut(s) | 249 |
| BshTI | ACCGGT | 1 cut(s) | 328 |
| BsiEI | CGRYCG | 1 cut(s) | 304 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2150, 2780 |
| BsiHKCI | CYCGRG | 1 cut(s) | 600 |
| BsiSI | CCGG | 4 cut(s) | 117, 300, 329, 971 |
| BslFI | GGGAC | 3 cut(s) | 337, 2830, 2948 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 360, 409, 439, 1118, 1978, 2513 |
| BsmAI | GTCTC | 3 cut(s) | 300, 2041, 2447 |
| BsmFI | GGGAC | 3 cut(s) | 337, 2830, 2948 |
| BsmI | GAATGC | 2 cut(s) | 1021, 3020 |
| BsnI | GGCC | 2 cut(s) | 303, 2613 |
| Bso31I | GGTCTC | 2 cut(s) | 300, 2447 |
| BsoBI | CYCGRG | 1 cut(s) | 600 |
| Bsp1286I | GDGCHC | 5 cut(s) | 504, 2150, 2253, 2365, 2780 |
| Bsp1407I | TGTACA | 2 cut(s) | 96, 2003 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2370 |
| Bsp19I | CCATGG | 2 cut(s) | 2630, 3061 |
| BspACI | CCGC | 1 cut(s) | 1158 |
| BspANI | GGCC | 2 cut(s) | 303, 2613 |
| BspCNI | CTCAG | 5 cut(s) | 135, 351, 1938, 2575, 2596 |
| BspFNI | CGCG | 1 cut(s) | 236 |
| BspHI | TCATGA | 1 cut(s) | 1269 |
| BspLI | GGNNCC | 4 cut(s) | 251, 348, 1530, 2796 |
| BspMAI | CTGCAG | 1 cut(s) | 3005 |
| BspMI | ACCTGC | 2 cut(s) | 2586, 2884 |
| BspPI | GGATC | 9 cut(s) | 265, 341, 354, 927, 1523, 1536, 1842, 2789, 2802 |
| BspQI | GCTCTTC | 1 cut(s) | 1085 |
| BspT107I | GGYRCC | 1 cut(s) | 249 |
| BspTI | CTTAAG | 1 cut(s) | 565 |
| BspTNI | GGTCTC | 2 cut(s) | 300, 2447 |
| BsrDI | GCAATG | 1 cut(s) | 2611 |
| BsrFI | RCCGGY | 1 cut(s) | 328 |
| BsrGI | TGTACA | 2 cut(s) | 96, 2003 |
| BsrI | ACTGG | 2 cut(s) | 1750, 2168 |
| BssAI | RCCGGY | 1 cut(s) | 328 |
| BssNI | GRCGYC | 1 cut(s) | 560 |
| BssSI | CACGAG | 1 cut(s) | 503 |
| BssT1I | CCWWGG | 5 cut(s) | 863, 2357, 2630, 2650, 3061 |
| Bst2BI | CACGAG | 1 cut(s) | 503 |
| Bst2UI | CCWGG | 4 cut(s) | 1533, 2123, 2449, 2850 |
| Bst4CI | ACNGT | 4 cut(s) | 535, 1408, 1799, 2477 |
| Bst6I | CTCTTC | 2 cut(s) | 1085, 2955 |
| BstACI | GRCGYC | 1 cut(s) | 560 |
| BstAFI | CTTAAG | 1 cut(s) | 565 |
| BstAUI | TGTACA | 2 cut(s) | 96, 2003 |
| BstC8I | GCNNGC | 2 cut(s) | 1002, 1092 |
| BstDSI | CCRYGG | 2 cut(s) | 2630, 3061 |
| BstEII | GGTNACC | 1 cut(s) | 1444 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1116 |
| BstF5I | GGATG | 7 cut(s) | 239, 967, 1397, 1555, 1636, 1707, 1754 |
| BstFNI | CGCG | 1 cut(s) | 236 |
| BstHHI | GCGC | 3 cut(s) | 183, 282, 885 |
| BstMAI | GTCTC | 3 cut(s) | 300, 2041, 2447 |
| BstMCI | CGRYCG | 1 cut(s) | 304 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 30, 467, 952, 1025, 2182, 2500, 2610, 2997 |
| BstNI | CCWGG | 4 cut(s) | 1533, 2123, 2449, 2850 |
| BstNSI | RCATGY | 2 cut(s) | 1004, 1094 |
| BstPI | GGTNACC | 1 cut(s) | 1444 |
| BstSCI | CCNGG | 6 cut(s) | 298, 970, 1531, 2121, 2447, 2848 |
| BstSFI | CTRYAG | 4 cut(s) | 1560, 1861, 2066, 3001 |
| BstSLI | GKGCMC | 1 cut(s) | 504 |
| BstUI | CGCG | 1 cut(s) | 236 |
| BstV1I | GCAGC | 5 cut(s) | 165, 455, 753, 2987, 3009 |
| BstV2I | GAAGAC | 4 cut(s) | 72, 83, 692, 1157 |
| BstX2I | RGATCY | 6 cut(s) | 14, 291, 346, 463, 1528, 2794 |
| BstYI | RGATCY | 6 cut(s) | 14, 291, 346, 463, 1528, 2794 |
| BstZI | CGGCCG | 1 cut(s) | 301 |
| BsuI | GTATCC | 1 cut(s) | 2775 |
| BsuRI | GGCC | 2 cut(s) | 303, 2613 |
| BtgI | CCRYGG | 2 cut(s) | 2630, 3061 |
| BtsCI | GGATG | 7 cut(s) | 239, 967, 1397, 1555, 1636, 1707, 1754 |
| BtsI | GCAGTG | 3 cut(s) | 446, 693, 948 |
| BtsIMutI | CAGTG | 9 cut(s) | 446, 693, 948, 1070, 1413, 1743, 1795, 1953, 2381 |
| BveI | ACCTGC | 2 cut(s) | 2586, 2884 |
| Cac8I | GCNNGC | 2 cut(s) | 1002, 1092 |
| CciI | TCATGA | 1 cut(s) | 1269 |
| CfoI | GCGC | 3 cut(s) | 183, 282, 885 |
| Cfr10I | RCCGGY | 1 cut(s) | 328 |
| Cfr13I | GGNCC | 2 cut(s) | 928, 1915 |
| CseI | GACGC | 2 cut(s) | 225, 568 |
| Csp6I | GTAC | 8 cut(s) | 97, 1148, 1673, 1736, 1800, 2004, 2241, 2635 |
| CspAI | ACCGGT | 1 cut(s) | 328 |
| CviQI | GTAC | 8 cut(s) | 97, 1148, 1673, 1736, 1800, 2004, 2241, 2635 |
| DraI | TTTAAA | 1 cut(s) | 717 |
| DriI | GACNNNNNGTC | 2 cut(s) | 235, 375 |
| EaeI | YGGCCR | 1 cut(s) | 301 |
| EagI | CGGCCG | 1 cut(s) | 301 |
| Eam1104I | CTCTTC | 2 cut(s) | 1085, 2955 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 235, 375 |
| EarI | CTCTTC | 2 cut(s) | 1085, 2955 |
| EclXI | CGGCCG | 1 cut(s) | 301 |
| Eco130I | CCWWGG | 5 cut(s) | 863, 2357, 2630, 2650, 3061 |
| Eco147I | AGGCCT | 1 cut(s) | 2613 |
| Eco24I | GRGCYC | 2 cut(s) | 2253, 2365 |
| Eco31I | GGTCTC | 2 cut(s) | 300, 2447 |
| Eco47I | GGWCC | 2 cut(s) | 928, 1915 |
| Eco52I | CGGCCG | 1 cut(s) | 301 |
| Eco57I | CTGAAG | 6 cut(s) | 39, 115, 192, 1066, 1094, 2198 |
| Eco88I | CYCGRG | 1 cut(s) | 600 |
| Eco91I | GGTNACC | 1 cut(s) | 1444 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1116 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1915 |
| EcoO65I | GGTNACC | 1 cut(s) | 1444 |
| EcoRI | GAATTC | 2 cut(s) | 591, 1397 |
| EcoRII | CCWGG | 4 cut(s) | 1531, 2121, 2447, 2848 |
| EcoT14I | CCWWGG | 5 cut(s) | 863, 2357, 2630, 2650, 3061 |
| EcoT22I | ATGCAT | 3 cut(s) | 1479, 1632, 2418 |
| EcoT38I | GRGCYC | 2 cut(s) | 2253, 2365 |
| ErhI | CCWWGG | 5 cut(s) | 863, 2357, 2630, 2650, 3061 |
| FaqI | GGGAC | 3 cut(s) | 337, 2830, 2948 |
| FauNDI | CATATG | 1 cut(s) | 620 |
| FbaI | TGATCA | 2 cut(s) | 2673, 2977 |
| Fnu4HI | GCNGC | 5 cut(s) | 179, 444, 742, 2998, 3001 |
| FokI | GGATG | 7 cut(s) | 226, 954, 1404, 1542, 1623, 1714, 1761 |
| FriOI | GRGCYC | 2 cut(s) | 2253, 2365 |
| Fsp4HI | GCNGC | 5 cut(s) | 179, 444, 742, 2998, 3001 |
| FspI | TGCGCA | 1 cut(s) | 182 |
| GlaI | GCGC | 3 cut(s) | 182, 281, 884 |
| GluI | GCNGC | 5 cut(s) | 179, 444, 742, 2998, 3001 |
| GsaI | CCCAGC | 1 cut(s) | 1821 |
| GsuI | CTGGAG | 2 cut(s) | 1706, 2756 |
| HaeIII | GGCC | 2 cut(s) | 303, 2613 |
| HapII | CCGG | 4 cut(s) | 117, 300, 329, 971 |
| HgaI | GACGC | 2 cut(s) | 225, 568 |
| HhaI | GCGC | 3 cut(s) | 183, 282, 885 |
| Hin1I | GRCGYC | 1 cut(s) | 560 |
| Hin6I | GCGC | 3 cut(s) | 181, 280, 883 |
| HinP1I | GCGC | 3 cut(s) | 181, 280, 883 |
| HincII | GTYRAC | 3 cut(s) | 112, 430, 1940 |
| HindII | GTYRAC | 3 cut(s) | 112, 430, 1940 |
| HindIII | AAGCTT | 2 cut(s) | 2008, 2090 |
| HpaII | CCGG | 4 cut(s) | 117, 300, 329, 971 |
| HphI | GGTGA | 7 cut(s) | 76, 1274, 2437, 2539, 2675, 2854, 2987 |
| Hpy166II | GTNNAC | 8 cut(s) | 99, 112, 430, 709, 1150, 1940, 2056, 2530 |
| Hpy8I | GTNNAC | 8 cut(s) | 99, 112, 430, 709, 1150, 1940, 2056, 2530 |
| HpyCH4III | ACNGT | 4 cut(s) | 535, 1408, 1799, 2477 |
| HpyCH4IV | ACGT | 1 cut(s) | 1540 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 30, 467, 952, 1025, 2182, 2500, 2610, 2997 |
| HpySE526I | ACGT | 1 cut(s) | 1540 |
| Hsp92I | GRCGYC | 1 cut(s) | 560 |
| HspAI | GCGC | 3 cut(s) | 181, 280, 883 |
| Ksp22I | TGATCA | 2 cut(s) | 2673, 2977 |
| LguI | GCTCTTC | 1 cut(s) | 1085 |
| LmnI | GCTCC | 4 cut(s) | 259, 580, 772, 1725 |
| Lsp1109I | GCAGC | 5 cut(s) | 165, 455, 753, 2987, 3009 |
| MaeII | ACGT | 1 cut(s) | 1540 |
| MaeIII | GTNAC | 6 cut(s) | 480, 529, 1121, 1444, 1490, 2586 |
| MflI | RGATCY | 6 cut(s) | 14, 291, 346, 463, 1528, 2794 |
| MhlI | GDGCHC | 5 cut(s) | 504, 2150, 2253, 2365, 2780 |
| MluI | ACGCGT | 1 cut(s) | 234 |
| MlyI | GAGTC | 7 cut(s) | 114, 1061, 1289, 1529, 1559, 1786, 2930 |
| MmeI | TCCRAC | 5 cut(s) | 536, 568, 1357, 1769, 2496 |
| Mph1103I | ATGCAT | 3 cut(s) | 1479, 1632, 2418 |
| MroXI | GAANNNNTTC | 5 cut(s) | 80, 595, 1079, 1251, 1761 |
| MseI | TTAA | 9 cut(s) | 168, 566, 615, 716, 794, 1995, 2157, 2318, 2393 |
| MslI | CAYNNNNRTG | 3 cut(s) | 244, 315, 2108 |
| MspA1I | CMGCKG | 1 cut(s) | 3000 |
| MspCI | CTTAAG | 1 cut(s) | 565 |
| MspI | CCGG | 4 cut(s) | 117, 300, 329, 971 |
| MspR9I | CCNGG | 6 cut(s) | 300, 972, 1533, 2123, 2449, 2850 |
| Mva1269I | GAATGC | 2 cut(s) | 1021, 3020 |
| MvaI | CCWGG | 4 cut(s) | 1533, 2123, 2449, 2850 |
| MvnI | CGCG | 1 cut(s) | 236 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 30, 467, 952, 1025, 2182, 2500, 2610, 2997 |
| NciI | CCSGG | 2 cut(s) | 300, 972 |
| NcoI | CCATGG | 2 cut(s) | 2630, 3061 |
| NdeI | CATATG | 1 cut(s) | 620 |
| NlaIV | GGNNCC | 4 cut(s) | 251, 348, 1530, 2796 |
| NmeAIII | GCCGAG | 1 cut(s) | 329 |
| NmuCI | GTSAC | 2 cut(s) | 1490, 2586 |
| NsbI | TGCGCA | 1 cut(s) | 182 |
| NsiI | ATGCAT | 3 cut(s) | 1479, 1632, 2418 |
| NspI | RCATGY | 2 cut(s) | 1004, 1094 |
| PaeI | GCATGC | 2 cut(s) | 1004, 1094 |
| PaeR7I | CTCGAG | 1 cut(s) | 600 |
| PagI | TCATGA | 1 cut(s) | 1269 |
| PceI | AGGCCT | 1 cut(s) | 2613 |
| PciSI | GCTCTTC | 1 cut(s) | 1085 |
| PctI | GAATGC | 2 cut(s) | 1021, 3020 |
| PdmI | GAANNNNTTC | 5 cut(s) | 80, 595, 1079, 1251, 1761 |
| PfoI | TCCNGGA | 1 cut(s) | 970 |
| PinAI | ACCGGT | 1 cut(s) | 328 |
| PkrI | GCNGC | 5 cut(s) | 180, 445, 743, 2999, 3002 |
| PleI | GAGTC | 7 cut(s) | 114, 1061, 1289, 1528, 1559, 1786, 2930 |
| PpsI | GAGTC | 7 cut(s) | 114, 1061, 1289, 1528, 1559, 1786, 2930 |
| PpuMI | RGGWCCY | 1 cut(s) | 1915 |
| PsiI | TTATAA | 2 cut(s) | 1041, 2135 |
| Psp5II | RGGWCCY | 1 cut(s) | 1915 |
| Psp6I | CCWGG | 4 cut(s) | 1531, 2121, 2447, 2848 |
| PspEI | GGTNACC | 1 cut(s) | 1444 |
| PspFI | CCCAGC | 1 cut(s) | 1817 |
| PspGI | CCWGG | 4 cut(s) | 1531, 2121, 2447, 2848 |
| PspN4I | GGNNCC | 4 cut(s) | 251, 348, 1530, 2796 |
| PspPI | GGNCC | 2 cut(s) | 928, 1915 |
| PspPPI | RGGWCCY | 1 cut(s) | 1915 |
| PstI | CTGCAG | 1 cut(s) | 3005 |
| PsuI | RGATCY | 6 cut(s) | 14, 291, 346, 463, 1528, 2794 |
| PvuII | CAGCTG | 1 cut(s) | 3000 |
| RsaI | GTAC | 8 cut(s) | 98, 1149, 1674, 1737, 1801, 2005, 2242, 2636 |
| RsaNI | GTAC | 8 cut(s) | 97, 1148, 1673, 1736, 1800, 2004, 2241, 2635 |
| RseI | CAYNNNNRTG | 3 cut(s) | 244, 315, 2108 |
| SapI | GCTCTTC | 1 cut(s) | 1085 |
| SaqAI | TTAA | 9 cut(s) | 168, 566, 615, 716, 794, 1995, 2157, 2318, 2393 |
| SatI | GCNGC | 5 cut(s) | 179, 444, 742, 2998, 3001 |
| Sau96I | GGNCC | 2 cut(s) | 928, 1915 |
| ScaI | AGTACT | 2 cut(s) | 1674, 2242 |
| SchI | GAGTC | 7 cut(s) | 114, 1061, 1289, 1529, 1559, 1786, 2930 |
| ScrFI | CCNGG | 6 cut(s) | 300, 972, 1533, 2123, 2449, 2850 |
| SduI | GDGCHC | 5 cut(s) | 504, 2150, 2253, 2365, 2780 |
| SfcI | CTRYAG | 4 cut(s) | 1560, 1861, 2066, 3001 |
| Sfr274I | CTCGAG | 1 cut(s) | 600 |
| SinI | GGWCC | 2 cut(s) | 928, 1915 |
| SlaI | CTCGAG | 1 cut(s) | 600 |
| SmiI | ATTTAAAT | 1 cut(s) | 717 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 244, 315, 2108 |
| SmlI | CTYRAG | 7 cut(s) | 49, 149, 254, 275, 565, 600, 749 |
| SmoI | CTYRAG | 7 cut(s) | 49, 149, 254, 275, 565, 600, 749 |
| SpeI | ACTAGT | 1 cut(s) | 2050 |
| SphI | GCATGC | 2 cut(s) | 1004, 1094 |
| SseBI | AGGCCT | 1 cut(s) | 2613 |
| SsiI | CCGC | 1 cut(s) | 1158 |
| StuI | AGGCCT | 1 cut(s) | 2613 |
| StyD4I | CCNGG | 6 cut(s) | 298, 970, 1531, 2121, 2447, 2848 |
| StyI | CCWWGG | 5 cut(s) | 863, 2357, 2630, 2650, 3061 |
| SwaI | ATTTAAAT | 1 cut(s) | 717 |
| TaaI | ACNGT | 4 cut(s) | 535, 1408, 1799, 2477 |
| TaiI | ACGT | 1 cut(s) | 1543 |
| TaqI | TCGA | 8 cut(s) | 39, 601, 732, 1062, 1202, 2454, 2872, 2882 |
| TatI | WGTACW | 7 cut(s) | 96, 1147, 1672, 1735, 1799, 2003, 2240 |
| Tru1I | TTAA | 9 cut(s) | 168, 566, 615, 716, 794, 1995, 2157, 2318, 2393 |
| Tru9I | TTAA | 9 cut(s) | 168, 566, 615, 716, 794, 1995, 2157, 2318, 2393 |
| TscAI | CASTG | 9 cut(s) | 453, 700, 948, 1077, 1413, 1750, 1802, 1960, 2388 |
| TseFI | GTSAC | 2 cut(s) | 1490, 2586 |
| TseI | GCWGC | 5 cut(s) | 178, 443, 741, 2997, 3000 |
| Tsp45I | GTSAC | 2 cut(s) | 1490, 2586 |
| TspGWI | ACGGA | 3 cut(s) | 339, 941, 1117 |
| TspRI | CASTG | 9 cut(s) | 453, 700, 948, 1077, 1413, 1750, 1802, 1960, 2388 |
| Vha464I | CTTAAG | 1 cut(s) | 565 |
| VpaK11BI | GGWCC | 2 cut(s) | 928, 1915 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1116 |
| XapI | RAATTY | 3 cut(s) | 591, 718, 1397 |
| XbaI | TCTAGA | 1 cut(s) | 1516 |
| XceI | RCATGY | 2 cut(s) | 1004, 1094 |
| XhoI | CTCGAG | 1 cut(s) | 600 |
| XmaJI | CCTAGG | 2 cut(s) | 863, 2357 |
| XmnI | GAANNNNTTC | 5 cut(s) | 80, 595, 1079, 1251, 1761 |
| ZrmI | AGTACT | 2 cut(s) | 1674, 2242 |
| Zsp2I | ATGCAT | 3 cut(s) | 1479, 1632, 2418 |