TMV resistance protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 959 |
| AarI | CACCTGC | 1 cut(s) | 462 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1034 |
| Acc36I | ACCTGC | 1 cut(s) | 462 |
| AccB1I | GGYRCC | 2 cut(s) | 474, 971 |
| AccII | CGCG | 2 cut(s) | 267, 1050 |
| AciI | CCGC | 7 cut(s) | 265, 267, 480, 1041, 1140, 1143, 1220 |
| AclI | AACGTT | 1 cut(s) | 597 |
| AclWI | GGATC | 1 cut(s) | 386 |
| AcoI | YGGCCR | 2 cut(s) | 184, 628 |
| AcuI | CTGAAG | 2 cut(s) | 120, 918 |
| AfaI | GTAC | 3 cut(s) | 275, 539, 718 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 484, 485, 486, 559, 588, 621, 1179 |
| AgsI | TTSAA | 7 cut(s) | 160, 447, 790, 886, 1111, 1159, 1306 |
| AjnI | CCWGG | 2 cut(s) | 761, 1254 |
| AleI | CACNNNNGTG | 1 cut(s) | 1325 |
| AluBI | AGCT | 4 cut(s) | 212, 227, 242, 578 |
| AluI | AGCT | 4 cut(s) | 212, 227, 242, 578 |
| Alw26I | GTCTC | 2 cut(s) | 52, 70 |
| AlwI | GGATC | 1 cut(s) | 386 |
| AoxI | GGCC | 4 cut(s) | 184, 318, 628, 1251 |
| ApeKI | GCWGC | 1 cut(s) | 5 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 598, 736 |
| AspLEI | GCGC | 1 cut(s) | 1050 |
| AspS9I | GGNCC | 2 cut(s) | 91, 1252 |
| AsuC2I | CCSGG | 1 cut(s) | 589 |
| AsuHPI | GGTGA | 7 cut(s) | 76, 92, 102, 164, 809, 1102, 1195 |
| AvaII | GGWCC | 1 cut(s) | 91 |
| BaeGI | GKGCMC | 1 cut(s) | 479 |
| BalI | TGGCCA | 1 cut(s) | 630 |
| BanI | GGYRCC | 2 cut(s) | 474, 971 |
| BbsI | GAAGAC | 1 cut(s) | 1298 |
| BbvI | GCAGC | 1 cut(s) | 17 |
| BccI | CCATC | 4 cut(s) | 154, 329, 722, 1003 |
| BceAI | ACGGC | 1 cut(s) | 542 |
| BciT130I | CCWGG | 2 cut(s) | 763, 1256 |
| BciVI | GTATCC | 1 cut(s) | 556 |
| BcnI | CCSGG | 1 cut(s) | 589 |
| BcoDI | GTCTC | 2 cut(s) | 52, 70 |
| BfaI | CTAG | 4 cut(s) | 11, 575, 942, 1013 |
| BfmI | CTRYAG | 1 cut(s) | 723 |
| BfuAI | ACCTGC | 1 cut(s) | 462 |
| BfuI | GTATCC | 1 cut(s) | 556 |
| BisI | GCNGC | 3 cut(s) | 6, 268, 1141 |
| BlpI | GCTNAGC | 1 cut(s) | 228 |
| BlsI | GCNGC | 3 cut(s) | 7, 269, 1142 |
| Bme1390I | CCNGG | 3 cut(s) | 589, 763, 1256 |
| Bme18I | GGWCC | 1 cut(s) | 91 |
| BmgT120I | GGNCC | 2 cut(s) | 91, 1252 |
| BmiI | GGNNCC | 5 cut(s) | 476, 646, 973, 993, 1230 |
| BmrFI | CCNGG | 3 cut(s) | 589, 763, 1256 |
| BmsI | GCATC | 1 cut(s) | 947 |
| BpiI | GAAGAC | 1 cut(s) | 1298 |
| BpmI | CTGGAG | 1 cut(s) | 1010 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 228 |
| BpuMI | CCSGG | 1 cut(s) | 589 |
| BsaI | GGTCTC | 1 cut(s) | 70 |
| BsaJI | CCNNGG | 7 cut(s) | 87, 265, 483, 558, 762, 1254, 1323 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 484, 485, 486, 559, 588, 621, 1179 |
| Bse118I | RCCGGY | 1 cut(s) | 332 |
| Bse1I | ACTGG | 2 cut(s) | 646, 993 |
| Bse3DI | GCAATG | 1 cut(s) | 436 |
| BseBI | CCWGG | 2 cut(s) | 763, 1256 |
| BseDI | CCNNGG | 7 cut(s) | 87, 265, 483, 558, 762, 1254, 1323 |
| BseGI | GGATG | 1 cut(s) | 146 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 484, 485, 486, 559, 588, 621, 1179 |
| BseMI | GCAATG | 1 cut(s) | 436 |
| BseMII | CTCAG | 4 cut(s) | 205, 234, 242, 1076 |
| BseNI | ACTGG | 2 cut(s) | 646, 993 |
| BseSI | GKGCMC | 1 cut(s) | 479 |
| BseX3I | CGGCCG | 1 cut(s) | 184 |
| BseXI | GCAGC | 1 cut(s) | 17 |
| Bsh1236I | CGCG | 2 cut(s) | 267, 1050 |
| Bsh1285I | CGRYCG | 1 cut(s) | 187 |
| BshFI | GGCC | 4 cut(s) | 186, 320, 630, 1253 |
| BshNI | GGYRCC | 2 cut(s) | 474, 971 |
| BsiEI | CGRYCG | 1 cut(s) | 187 |
| BsiSI | CCGG | 5 cut(s) | 333, 588, 816, 969, 1217 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 484, 485, 486, 559, 588, 621, 1179 |
| BsmAI | GTCTC | 2 cut(s) | 52, 70 |
| BsmI | GAATGC | 1 cut(s) | 169 |
| BsnI | GGCC | 4 cut(s) | 186, 320, 630, 1253 |
| Bso31I | GGTCTC | 1 cut(s) | 70 |
| Bsp1286I | GDGCHC | 1 cut(s) | 479 |
| Bsp143I | GATC | 2 cut(s) | 312, 391 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 228 |
| BspACI | CCGC | 7 cut(s) | 265, 267, 480, 1041, 1140, 1143, 1220 |
| BspANI | GGCC | 4 cut(s) | 186, 320, 630, 1253 |
| BspCNI | CTCAG | 4 cut(s) | 204, 235, 241, 1075 |
| BspFNI | CGCG | 2 cut(s) | 267, 1050 |
| BspLI | GGNNCC | 5 cut(s) | 476, 646, 973, 993, 1230 |
| BspMI | ACCTGC | 1 cut(s) | 462 |
| BspPI | GGATC | 1 cut(s) | 386 |
| BspQI | GCTCTTC | 1 cut(s) | 448 |
| BspT107I | GGYRCC | 2 cut(s) | 474, 971 |
| BspTNI | GGTCTC | 1 cut(s) | 70 |
| BsrDI | GCAATG | 1 cut(s) | 436 |
| BsrFI | RCCGGY | 1 cut(s) | 332 |
| BsrI | ACTGG | 2 cut(s) | 646, 993 |
| BssAI | RCCGGY | 1 cut(s) | 332 |
| BssECI | CCNNGG | 7 cut(s) | 87, 265, 483, 558, 762, 1254, 1323 |
| BssMI | GATC | 2 cut(s) | 312, 391 |
| BssT1I | CCWWGG | 2 cut(s) | 483, 1323 |
| Bst2UI | CCWGG | 2 cut(s) | 763, 1256 |
| Bst4CI | ACNGT | 5 cut(s) | 88, 104, 176, 1129, 1297 |
| Bst6I | CTCTTC | 2 cut(s) | 223, 448 |
| BstC8I | GCNNGC | 2 cut(s) | 362, 508 |
| BstDEI | CTNAG | 6 cut(s) | 191, 228, 243, 748, 1062, 1267 |
| BstDSI | CCRYGG | 3 cut(s) | 87, 265, 558 |
| BstEII | GGTNACC | 1 cut(s) | 770 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1177 |
| BstF5I | GGATG | 1 cut(s) | 146 |
| BstFNI | CGCG | 2 cut(s) | 267, 1050 |
| BstHHI | GCGC | 1 cut(s) | 1050 |
| BstKTI | GATC | 2 cut(s) | 315, 394 |
| BstMAI | GTCTC | 2 cut(s) | 52, 70 |
| BstMBI | GATC | 2 cut(s) | 312, 391 |
| BstMCI | CGRYCG | 1 cut(s) | 187 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 11, 20, 192, 267, 361, 1047 |
| BstNI | CCWGG | 2 cut(s) | 763, 1256 |
| BstPI | GGTNACC | 1 cut(s) | 770 |
| BstSCI | CCNGG | 3 cut(s) | 587, 761, 1254 |
| BstSFI | CTRYAG | 1 cut(s) | 723 |
| BstSLI | GKGCMC | 1 cut(s) | 479 |
| BstUI | CGCG | 2 cut(s) | 267, 1050 |
| BstV1I | GCAGC | 1 cut(s) | 17 |
| BstV2I | GAAGAC | 1 cut(s) | 1298 |
| BstZI | CGGCCG | 1 cut(s) | 184 |
| BsuI | GTATCC | 1 cut(s) | 556 |
| BsuRI | GGCC | 4 cut(s) | 186, 320, 630, 1253 |
| BtgI | CCRYGG | 3 cut(s) | 87, 265, 558 |
| BtgZI | GCGATG | 1 cut(s) | 307 |
| BtsCI | GGATG | 1 cut(s) | 146 |
| BtsI | GCAGTG | 2 cut(s) | 343, 362 |
| BtsIMutI | CAGTG | 3 cut(s) | 343, 362, 456 |
| BveI | ACCTGC | 1 cut(s) | 462 |
| Cac8I | GCNNGC | 2 cut(s) | 362, 508 |
| CfoI | GCGC | 1 cut(s) | 1050 |
| Cfr10I | RCCGGY | 1 cut(s) | 332 |
| Cfr13I | GGNCC | 2 cut(s) | 91, 1252 |
| Cfr42I | CCGCGG | 1 cut(s) | 268 |
| CseI | GACGC | 1 cut(s) | 361 |
| Csp6I | GTAC | 3 cut(s) | 274, 538, 717 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 472, 507, 823, 858 |
| CviAII | CATG | 1 cut(s) | 280 |
| CviQI | GTAC | 3 cut(s) | 274, 538, 717 |
| DdeI | CTNAG | 6 cut(s) | 191, 228, 243, 748, 1062, 1267 |
| DpnI | GATC | 2 cut(s) | 314, 393 |
| DpnII | GATC | 2 cut(s) | 312, 391 |
| DraI | TTTAAA | 1 cut(s) | 201 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1034 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1034 |
| EaeI | YGGCCR | 2 cut(s) | 184, 628 |
| EagI | CGGCCG | 1 cut(s) | 184 |
| Eam1104I | CTCTTC | 2 cut(s) | 223, 448 |
| EarI | CTCTTC | 2 cut(s) | 223, 448 |
| EclXI | CGGCCG | 1 cut(s) | 184 |
| Eco130I | CCWWGG | 2 cut(s) | 483, 1323 |
| Eco31I | GGTCTC | 1 cut(s) | 70 |
| Eco47I | GGWCC | 1 cut(s) | 91 |
| Eco52I | CGGCCG | 1 cut(s) | 184 |
| Eco57I | CTGAAG | 2 cut(s) | 120, 918 |
| Eco91I | GGTNACC | 1 cut(s) | 770 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1177 |
| EcoO65I | GGTNACC | 1 cut(s) | 770 |
| EcoRII | CCWGG | 2 cut(s) | 761, 1254 |
| EcoT14I | CCWWGG | 2 cut(s) | 483, 1323 |
| ErhI | CCWWGG | 2 cut(s) | 483, 1323 |
| FaeI | CATG | 1 cut(s) | 283 |
| FaiI | YATR | 9 cut(s) | 281, 528, 617, 671, 725, 959, 1086, 1242, 1278 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 152, 184, 776, 808 |
| FatI | CATG | 1 cut(s) | 279 |
| FauI | CCCGC | 3 cut(s) | 487, 1034, 1136 |
| Fnu4HI | GCNGC | 3 cut(s) | 6, 268, 1141 |
| FokI | GGATG | 1 cut(s) | 133 |
| Fsp4HI | GCNGC | 3 cut(s) | 6, 268, 1141 |
| FspBI | CTAG | 4 cut(s) | 11, 575, 942, 1013 |
| GlaI | GCGC | 1 cut(s) | 1049 |
| GluI | GCNGC | 3 cut(s) | 6, 268, 1141 |
| GsuI | CTGGAG | 1 cut(s) | 1010 |
| HaeIII | GGCC | 4 cut(s) | 186, 320, 630, 1253 |
| HapII | CCGG | 5 cut(s) | 333, 588, 816, 969, 1217 |
| HgaI | GACGC | 1 cut(s) | 361 |
| HhaI | GCGC | 1 cut(s) | 1050 |
| Hin1II | CATG | 1 cut(s) | 283 |
| Hin6I | GCGC | 1 cut(s) | 1048 |
| HinP1I | GCGC | 1 cut(s) | 1048 |
| HincII | GTYRAC | 1 cut(s) | 1027 |
| HindII | GTYRAC | 1 cut(s) | 1027 |
| HinfI | GANTC | 9 cut(s) | 97, 107, 189, 245, 662, 695, 965, 1058, 1093 |
| HpaII | CCGG | 5 cut(s) | 333, 588, 816, 969, 1217 |
| HphI | GGTGA | 7 cut(s) | 76, 92, 102, 164, 809, 1102, 1195 |
| Hpy166II | GTNNAC | 7 cut(s) | 91, 249, 523, 540, 834, 1027, 1054 |
| Hpy188I | TCNGA | 5 cut(s) | 52, 139, 296, 548, 1065 |
| Hpy188III | TCNNGA | 2 cut(s) | 607, 877 |
| Hpy8I | GTNNAC | 7 cut(s) | 91, 249, 523, 540, 834, 1027, 1054 |
| Hpy99I | CGWCG | 2 cut(s) | 695, 1193 |
| HpyAV | CCTTC | 8 cut(s) | 133, 144, 190, 761, 877, 880, 1242, 1312 |
| HpyCH4III | ACNGT | 5 cut(s) | 88, 104, 176, 1129, 1297 |
| HpyCH4IV | ACGT | 4 cut(s) | 597, 906, 1248, 1281 |
| HpyCH4V | TGCA | 4 cut(s) | 29, 456, 1132, 1320 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 11, 20, 192, 267, 361, 1047 |
| HpyF3I | CTNAG | 6 cut(s) | 191, 228, 243, 748, 1062, 1267 |
| HpySE526I | ACGT | 4 cut(s) | 597, 906, 1248, 1281 |
| Hsp92II | CATG | 1 cut(s) | 283 |
| HspAI | GCGC | 1 cut(s) | 1048 |
| KspI | CCGCGG | 1 cut(s) | 268 |
| Kzo9I | GATC | 2 cut(s) | 312, 391 |
| LguI | GCTCTTC | 1 cut(s) | 448 |
| LmnI | GCTCC | 3 cut(s) | 991, 1045, 1219 |
| Lsp1109I | GCAGC | 1 cut(s) | 17 |
| LweI | GCATC | 1 cut(s) | 947 |
| MaeI | CTAG | 4 cut(s) | 11, 575, 942, 1013 |
| MaeII | ACGT | 4 cut(s) | 597, 906, 1248, 1281 |
| MaeIII | GTNAC | 5 cut(s) | 104, 338, 696, 770, 797 |
| MalI | GATC | 2 cut(s) | 314, 393 |
| MboI | GATC | 2 cut(s) | 312, 391 |
| MboII | GAAGA | 9 cut(s) | 29, 172, 210, 435, 862, 865, 924, 1300, 1303 |
| MfeI | CAATTG | 1 cut(s) | 710 |
| MhlI | GDGCHC | 1 cut(s) | 479 |
| MlsI | TGGCCA | 1 cut(s) | 630 |
| MluCI | AATT | 2 cut(s) | 373, 710 |
| MluNI | TGGCCA | 1 cut(s) | 630 |
| MlyI | GAGTC | 8 cut(s) | 101, 183, 254, 671, 704, 959, 1052, 1102 |
| MnlI | CCTC | 8 cut(s) | 71, 123, 287, 312, 353, 418, 677, 1186 |
| Mox20I | TGGCCA | 1 cut(s) | 630 |
| MroXI | GAANNNNTTC | 2 cut(s) | 598, 736 |
| MscI | TGGCCA | 1 cut(s) | 630 |
| MseI | TTAA | 4 cut(s) | 200, 254, 372, 1284 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1325 |
| Msp20I | TGGCCA | 1 cut(s) | 630 |
| MspA1I | CMGCKG | 2 cut(s) | 267, 1140 |
| MspI | CCGG | 5 cut(s) | 333, 588, 816, 969, 1217 |
| MspR9I | CCNGG | 3 cut(s) | 589, 763, 1256 |
| MunI | CAATTG | 1 cut(s) | 710 |
| Mva1269I | GAATGC | 1 cut(s) | 169 |
| MvaI | CCWGG | 2 cut(s) | 763, 1256 |
| MvnI | CGCG | 2 cut(s) | 267, 1050 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 11, 20, 192, 267, 361, 1047 |
| NciI | CCSGG | 1 cut(s) | 589 |
| NdeII | GATC | 2 cut(s) | 312, 391 |
| NlaIII | CATG | 1 cut(s) | 283 |
| NlaIV | GGNNCC | 5 cut(s) | 476, 646, 973, 993, 1230 |
| NmuCI | GTSAC | 4 cut(s) | 104, 338, 696, 797 |
| OliI | CACNNNNGTG | 1 cut(s) | 1325 |
| PaqCI | CACCTGC | 1 cut(s) | 462 |
| PciSI | GCTCTTC | 1 cut(s) | 448 |
| PctI | GAATGC | 1 cut(s) | 169 |
| PdmI | GAANNNNTTC | 2 cut(s) | 598, 736 |
| PfeI | GAWTC | 1 cut(s) | 97 |
| PflFI | GACNNNGTC | 1 cut(s) | 1297 |
| PkrI | GCNGC | 3 cut(s) | 7, 269, 1142 |
| PleI | GAGTC | 8 cut(s) | 101, 183, 253, 670, 703, 959, 1052, 1101 |
| PpsI | GAGTC | 8 cut(s) | 101, 183, 253, 670, 703, 959, 1052, 1101 |
| PsiI | TTATAA | 1 cut(s) | 959 |
| Psp1406I | AACGTT | 1 cut(s) | 597 |
| Psp6I | CCWGG | 2 cut(s) | 761, 1254 |
| PspEI | GGTNACC | 1 cut(s) | 770 |
| PspGI | CCWGG | 2 cut(s) | 761, 1254 |
| PspN4I | GGNNCC | 5 cut(s) | 476, 646, 973, 993, 1230 |
| PspPI | GGNCC | 2 cut(s) | 91, 1252 |
| PsyI | GACNNNGTC | 1 cut(s) | 1297 |
| RsaI | GTAC | 3 cut(s) | 275, 539, 718 |
| RsaNI | GTAC | 3 cut(s) | 274, 538, 717 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1325 |
| SacII | CCGCGG | 1 cut(s) | 268 |
| SapI | GCTCTTC | 1 cut(s) | 448 |
| SaqAI | TTAA | 4 cut(s) | 200, 254, 372, 1284 |
| SatI | GCNGC | 3 cut(s) | 6, 268, 1141 |
| Sau3AI | GATC | 2 cut(s) | 312, 391 |
| Sau96I | GGNCC | 2 cut(s) | 91, 1252 |
| SchI | GAGTC | 8 cut(s) | 101, 183, 254, 671, 704, 959, 1052, 1102 |
| ScrFI | CCNGG | 3 cut(s) | 589, 763, 1256 |
| SduI | GDGCHC | 1 cut(s) | 479 |
| SfaNI | GCATC | 1 cut(s) | 947 |
| SfcI | CTRYAG | 1 cut(s) | 723 |
| Sfr303I | CCGCGG | 1 cut(s) | 268 |
| SgrBI | CCGCGG | 1 cut(s) | 268 |
| SinI | GGWCC | 1 cut(s) | 91 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1325 |
| Sse9I | AATT | 2 cut(s) | 373, 710 |
| SsiI | CCGC | 7 cut(s) | 265, 267, 480, 1041, 1140, 1143, 1220 |
| SspI | AATATT | 1 cut(s) | 1123 |
| SspMI | CTAG | 4 cut(s) | 11, 575, 942, 1013 |
| StyD4I | CCNGG | 3 cut(s) | 587, 761, 1254 |
| StyI | CCWWGG | 2 cut(s) | 483, 1323 |
| TaaI | ACNGT | 5 cut(s) | 88, 104, 176, 1129, 1297 |
| TaiI | ACGT | 4 cut(s) | 600, 909, 1251, 1284 |
| TaqI | TCGA | 5 cut(s) | 311, 402, 846, 963, 1007 |
| TaqII | GACCGA | 1 cut(s) | 52 |
| TasI | AATT | 2 cut(s) | 373, 710 |
| TatI | WGTACW | 1 cut(s) | 537 |
| TauI | GCSGC | 2 cut(s) | 270, 1143 |
| TfiI | GAWTC | 1 cut(s) | 97 |
| Tru1I | TTAA | 4 cut(s) | 200, 254, 372, 1284 |
| Tru9I | TTAA | 4 cut(s) | 200, 254, 372, 1284 |
| TscAI | CASTG | 3 cut(s) | 343, 362, 463 |
| TseFI | GTSAC | 4 cut(s) | 104, 338, 696, 797 |
| TseI | GCWGC | 1 cut(s) | 5 |
| Tsp45I | GTSAC | 4 cut(s) | 104, 338, 696, 797 |
| TspDTI | ATGAA | 2 cut(s) | 46, 425 |
| TspRI | CASTG | 3 cut(s) | 343, 362, 463 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1297 |
| VpaK11BI | GGWCC | 1 cut(s) | 91 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1177 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 638 |
| XmnI | GAANNNNTTC | 2 cut(s) | 598, 736 |
| XspI | CTAG | 4 cut(s) | 11, 575, 942, 1013 |