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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1992 |
| AccB1I | GGYRCC | 1 cut(s) | 276 |
| AccI | GTMKAC | 3 cut(s) | 936, 1564, 1896 |
| AclI | AACGTT | 1 cut(s) | 864 |
| AclWI | GGATC | 3 cut(s) | 292, 353, 655 |
| AcoI | YGGCCR | 1 cut(s) | 1117 |
| AcsI | RAATTY | 2 cut(s) | 730, 1811 |
| AfaI | GTAC | 4 cut(s) | 858, 963, 1615, 1752 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 372, 1136 |
| AflII | CTTAAG | 1 cut(s) | 1099 |
| AflIII | ACRYGT | 1 cut(s) | 1747 |
| AjiI | CACGTC | 1 cut(s) | 1748 |
| AjnI | CCWGG | 2 cut(s) | 199, 1119 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1235, 1267, 1620, 1652 |
| Alw21I | GWGCWC | 1 cut(s) | 1098 |
| Alw26I | GTCTC | 1 cut(s) | 1679 |
| AlwI | GGATC | 3 cut(s) | 292, 353, 655 |
| AoxI | GGCC | 1 cut(s) | 1117 |
| ApeKI | GCWGC | 1 cut(s) | 753 |
| ApoI | RAATTY | 2 cut(s) | 730, 1811 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1343 |
| AspLEI | GCGC | 1 cut(s) | 92 |
| AspS9I | GGNCC | 4 cut(s) | 325, 946, 1054, 1123 |
| AsuC2I | CCSGG | 1 cut(s) | 990 |
| AsuHPI | GGTGA | 5 cut(s) | 451, 559, 566, 1235, 1474 |
| AsuII | TTCGAA | 1 cut(s) | 251 |
| AvaII | GGWCC | 4 cut(s) | 325, 946, 1054, 1123 |
| BalI | TGGCCA | 1 cut(s) | 1119 |
| BanI | GGYRCC | 1 cut(s) | 276 |
| BanII | GRGCYC | 1 cut(s) | 1098 |
| BauI | CACGAG | 1 cut(s) | 413 |
| BbsI | GAAGAC | 2 cut(s) | 337, 704 |
| Bbv12I | GWGCWC | 1 cut(s) | 1098 |
| BbvI | GCAGC | 1 cut(s) | 765 |
| BccI | CCATC | 8 cut(s) | 370, 441, 481, 638, 1134, 1400, 1746, 1788 |
| BceAI | ACGGC | 2 cut(s) | 795, 1769 |
| BciT130I | CCWGG | 2 cut(s) | 201, 1121 |
| BciVI | GTATCC | 1 cut(s) | 1710 |
| BcnI | CCSGG | 1 cut(s) | 990 |
| BcoDI | GTCTC | 1 cut(s) | 1679 |
| BfaI | CTAG | 7 cut(s) | 408, 479, 906, 953, 1163, 1403, 1535 |
| BfmI | CTRYAG | 2 cut(s) | 206, 1782 |
| BfrI | CTTAAG | 1 cut(s) | 1099 |
| BfuI | GTATCC | 1 cut(s) | 1710 |
| BisI | GCNGC | 1 cut(s) | 754 |
| BlsI | GCNGC | 1 cut(s) | 755 |
| BmcAI | AGTACT | 1 cut(s) | 963 |
| Bme1390I | CCNGG | 3 cut(s) | 201, 990, 1121 |
| Bme18I | GGWCC | 4 cut(s) | 325, 946, 1054, 1123 |
| BmgBI | CACGTC | 1 cut(s) | 1748 |
| BmgT120I | GGNCC | 4 cut(s) | 325, 946, 1054, 1123 |
| BmiI | GGNNCC | 1 cut(s) | 278 |
| BmrFI | CCNGG | 3 cut(s) | 201, 990, 1121 |
| BmsI | GCATC | 5 cut(s) | 272, 946, 1445, 1663, 1936 |
| BpiI | GAAGAC | 2 cut(s) | 337, 704 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 442, 474 |
| BpmI | CTGGAG | 1 cut(s) | 1778 |
| Bpu14I | TTCGAA | 1 cut(s) | 251 |
| BpuEI | CTTGAG | 4 cut(s) | 6, 97, 197, 598 |
| BpuMI | CCSGG | 1 cut(s) | 990 |
| BsaBI | GATNNNNATC | 2 cut(s) | 357, 602 |
| BsaJI | CCNNGG | 2 cut(s) | 321, 1627 |
| BsaWI | WCCGGW | 1 cut(s) | 1335 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1719, 1749 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 372, 1136 |
| Bse1I | ACTGG | 1 cut(s) | 341 |
| Bse3DI | GCAATG | 2 cut(s) | 705, 1353 |
| Bse8I | GATNNNNATC | 2 cut(s) | 357, 602 |
| BseBI | CCWGG | 2 cut(s) | 201, 1121 |
| BseDI | CCNNGG | 2 cut(s) | 321, 1627 |
| BseJI | GATNNNNATC | 2 cut(s) | 357, 602 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 372, 1136 |
| BseMI | GCAATG | 2 cut(s) | 705, 1353 |
| BseMII | CTCAG | 4 cut(s) | 437, 1064, 1289, 1877 |
| BseNI | ACTGG | 1 cut(s) | 341 |
| BseRI | GAGGAG | 1 cut(s) | 198 |
| BseXI | GCAGC | 1 cut(s) | 765 |
| BshFI | GGCC | 1 cut(s) | 1119 |
| BshNI | GGYRCC | 1 cut(s) | 276 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1098 |
| BsiSI | CCGG | 2 cut(s) | 990, 1336 |
| BslFI | GGGAC | 1 cut(s) | 1391 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 372, 1136 |
| BsmAI | GTCTC | 1 cut(s) | 1679 |
| BsmFI | GGGAC | 1 cut(s) | 1391 |
| BsmI | GAATGC | 1 cut(s) | 1434 |
| BsnI | GGCC | 1 cut(s) | 1119 |
| Bsp119I | TTCGAA | 1 cut(s) | 251 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1098 |
| Bsp143I | GATC | 6 cut(s) | 297, 358, 475, 647, 976, 1498 |
| BspANI | GGCC | 1 cut(s) | 1119 |
| BspCNI | CTCAG | 4 cut(s) | 436, 1063, 1290, 1878 |
| BspHI | TCATGA | 2 cut(s) | 294, 1287 |
| BspLI | GGNNCC | 1 cut(s) | 278 |
| BspPI | GGATC | 3 cut(s) | 292, 353, 655 |
| BspQI | GCTCTTC | 2 cut(s) | 1200, 1539 |
| BspT104I | TTCGAA | 1 cut(s) | 251 |
| BspT107I | GGYRCC | 1 cut(s) | 276 |
| BspTI | CTTAAG | 1 cut(s) | 1099 |
| BsrDI | GCAATG | 2 cut(s) | 705, 1353 |
| BsrI | ACTGG | 1 cut(s) | 341 |
| BssECI | CCNNGG | 2 cut(s) | 321, 1627 |
| BssMI | GATC | 6 cut(s) | 297, 358, 475, 647, 976, 1498 |
| BssSI | CACGAG | 1 cut(s) | 413 |
| BssT1I | CCWWGG | 1 cut(s) | 1627 |
| Bst2BI | CACGAG | 1 cut(s) | 413 |
| Bst2UI | CCWGG | 2 cut(s) | 201, 1121 |
| Bst4CI | ACNGT | 6 cut(s) | 62, 225, 439, 1316, 1429, 1667 |
| Bst6I | CTCTTC | 4 cut(s) | 904, 1200, 1513, 1539 |
| BstAFI | CTTAAG | 1 cut(s) | 1099 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 470 |
| BstBI | TTCGAA | 1 cut(s) | 251 |
| BstC8I | GCNNGC | 2 cut(s) | 1106, 1110 |
| BstDEI | CTNAG | 6 cut(s) | 423, 1050, 1298, 1550, 1742, 1886 |
| BstEII | GGTNACC | 1 cut(s) | 56 |
| BstHHI | GCGC | 1 cut(s) | 92 |
| BstKTI | GATC | 6 cut(s) | 300, 361, 478, 650, 979, 1501 |
| BstMAI | GTCTC | 1 cut(s) | 1679 |
| BstMBI | GATC | 6 cut(s) | 297, 358, 475, 647, 976, 1498 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 470, 479 |
| BstNI | CCWGG | 2 cut(s) | 201, 1121 |
| BstNSI | RCATGY | 3 cut(s) | 1112, 1495, 1648 |
| BstPI | GGTNACC | 1 cut(s) | 56 |
| BstSCI | CCNGG | 3 cut(s) | 199, 988, 1119 |
| BstSFI | CTRYAG | 2 cut(s) | 206, 1782 |
| BstV1I | GCAGC | 1 cut(s) | 765 |
| BstV2I | GAAGAC | 2 cut(s) | 337, 704 |
| BsuI | GTATCC | 1 cut(s) | 1710 |
| BsuRI | GGCC | 1 cut(s) | 1119 |
| BtgZI | GCGATG | 1 cut(s) | 460 |
| BtrI | CACGTC | 1 cut(s) | 1748 |
| Cac8I | GCNNGC | 2 cut(s) | 1106, 1110 |
| CciI | TCATGA | 2 cut(s) | 294, 1287 |
| CfoI | GCGC | 1 cut(s) | 92 |
| Cfr13I | GGNCC | 4 cut(s) | 325, 946, 1054, 1123 |
| Csp6I | GTAC | 4 cut(s) | 857, 962, 1614, 1751 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1340, 1375 |
| CviAII | CATG | 9 cut(s) | 295, 368, 1109, 1144, 1288, 1331, 1492, 1645, 1649 |
| CviQI | GTAC | 4 cut(s) | 857, 962, 1614, 1751 |
| DdeI | CTNAG | 6 cut(s) | 423, 1050, 1298, 1550, 1742, 1886 |
| DpnI | GATC | 6 cut(s) | 299, 360, 477, 649, 978, 1500 |
| DpnII | GATC | 6 cut(s) | 297, 358, 475, 647, 976, 1498 |
| EaeI | YGGCCR | 1 cut(s) | 1117 |
| Eam1104I | CTCTTC | 4 cut(s) | 904, 1200, 1513, 1539 |
| EarI | CTCTTC | 4 cut(s) | 904, 1200, 1513, 1539 |
| Ecl136II | GAGCTC | 1 cut(s) | 1096 |
| Eco130I | CCWWGG | 1 cut(s) | 1627 |
| Eco24I | GRGCYC | 1 cut(s) | 1098 |
| Eco32I | GATATC | 1 cut(s) | 193 |
| Eco47I | GGWCC | 4 cut(s) | 325, 946, 1054, 1123 |
| Eco53kI | GAGCTC | 1 cut(s) | 1096 |
| Eco91I | GGTNACC | 1 cut(s) | 56 |
| EcoICRI | GAGCTC | 1 cut(s) | 1096 |
| EcoO65I | GGTNACC | 1 cut(s) | 56 |
| EcoRII | CCWGG | 2 cut(s) | 199, 1119 |
| EcoRV | GATATC | 1 cut(s) | 193 |
| EcoT14I | CCWWGG | 1 cut(s) | 1627 |
| EcoT22I | ATGCAT | 3 cut(s) | 1114, 1650, 1708 |
| EcoT38I | GRGCYC | 1 cut(s) | 1098 |
| ErhI | CCWWGG | 1 cut(s) | 1627 |
| FaeI | CATG | 9 cut(s) | 298, 371, 1112, 1147, 1291, 1334, 1495, 1648, 1652 |
| FaqI | GGGAC | 1 cut(s) | 1391 |
| FatI | CATG | 9 cut(s) | 294, 367, 1108, 1143, 1287, 1330, 1491, 1644, 1648 |
| FauNDI | CATATG | 2 cut(s) | 942, 1985 |
| FblI | GTMKAC | 3 cut(s) | 936, 1564, 1896 |
| Fnu4HI | GCNGC | 1 cut(s) | 754 |
| FriOI | GRGCYC | 1 cut(s) | 1098 |
| Fsp4HI | GCNGC | 1 cut(s) | 754 |
| FspBI | CTAG | 7 cut(s) | 408, 479, 906, 953, 1163, 1403, 1535 |
| GlaI | GCGC | 1 cut(s) | 91 |
| GluI | GCNGC | 1 cut(s) | 754 |
| GsuI | CTGGAG | 1 cut(s) | 1778 |
| HaeIII | GGCC | 1 cut(s) | 1119 |
| HapII | CCGG | 2 cut(s) | 990, 1336 |
| HhaI | GCGC | 1 cut(s) | 92 |
| Hin1II | CATG | 9 cut(s) | 298, 371, 1112, 1147, 1291, 1334, 1495, 1648, 1652 |
| Hin6I | GCGC | 1 cut(s) | 90 |
| HinP1I | GCGC | 1 cut(s) | 90 |
| HincII | GTYRAC | 1 cut(s) | 1974 |
| HindII | GTYRAC | 1 cut(s) | 1974 |
| HinfI | GANTC | 9 cut(s) | 38, 518, 603, 615, 1085, 1538, 1583, 1823, 1967 |
| HpaII | CCGG | 2 cut(s) | 990, 1336 |
| HphI | GGTGA | 5 cut(s) | 451, 559, 566, 1235, 1474 |
| Hpy188I | TCNGA | 7 cut(s) | 37, 86, 161, 221, 325, 773, 1543 |
| Hpy99I | CGWCG | 2 cut(s) | 54, 173 |
| HpyAV | CCTTC | 6 cut(s) | 740, 832, 866, 1130, 1368, 1954 |
| HpyCH4III | ACNGT | 6 cut(s) | 62, 225, 439, 1316, 1429, 1667 |
| HpyCH4IV | ACGT | 5 cut(s) | 155, 864, 1485, 1558, 1747 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 470, 479 |
| HpyF3I | CTNAG | 6 cut(s) | 423, 1050, 1298, 1550, 1742, 1886 |
| HpySE526I | ACGT | 5 cut(s) | 155, 864, 1485, 1558, 1747 |
| Hsp92II | CATG | 9 cut(s) | 298, 371, 1112, 1147, 1291, 1334, 1495, 1648, 1652 |
| HspAI | GCGC | 1 cut(s) | 90 |
| Kzo9I | GATC | 6 cut(s) | 297, 358, 475, 647, 976, 1498 |
| LguI | GCTCTTC | 2 cut(s) | 1200, 1539 |
| LmnI | GCTCC | 1 cut(s) | 1093 |
| Lsp1109I | GCAGC | 1 cut(s) | 765 |
| LweI | GCATC | 5 cut(s) | 272, 946, 1445, 1663, 1936 |
| MaeI | CTAG | 7 cut(s) | 408, 479, 906, 953, 1163, 1403, 1535 |
| MaeII | ACGT | 5 cut(s) | 155, 864, 1485, 1558, 1747 |
| MaeIII | GTNAC | 7 cut(s) | 56, 225, 554, 636, 1045, 1139, 1916 |
| MalI | GATC | 6 cut(s) | 299, 360, 477, 649, 978, 1500 |
| MboI | GATC | 6 cut(s) | 297, 358, 475, 647, 976, 1498 |
| MhlI | GDGCHC | 1 cut(s) | 1098 |
| MlsI | TGGCCA | 1 cut(s) | 1119 |
| MluNI | TGGCCA | 1 cut(s) | 1119 |
| MlyI | GAGTC | 2 cut(s) | 527, 609 |
| MmeI | TCCRAC | 3 cut(s) | 66, 244, 615 |
| Mox20I | TGGCCA | 1 cut(s) | 1119 |
| Mph1103I | ATGCAT | 3 cut(s) | 1114, 1650, 1708 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1343 |
| MscI | TGGCCA | 1 cut(s) | 1119 |
| MseI | TTAA | 5 cut(s) | 543, 1100, 1790, 1958, 1996 |
| MslI | CAYNNNNRTG | 2 cut(s) | 271, 1131 |
| Msp20I | TGGCCA | 1 cut(s) | 1119 |
| MspCI | CTTAAG | 1 cut(s) | 1099 |
| MspI | CCGG | 2 cut(s) | 990, 1336 |
| MspR9I | CCNGG | 3 cut(s) | 201, 990, 1121 |
| Mva1269I | GAATGC | 1 cut(s) | 1434 |
| MvaI | CCWGG | 2 cut(s) | 201, 1121 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 470, 479 |
| NciI | CCSGG | 1 cut(s) | 990 |
| NdeI | CATATG | 2 cut(s) | 942, 1985 |
| NdeII | GATC | 6 cut(s) | 297, 358, 475, 647, 976, 1498 |
| NlaIII | CATG | 9 cut(s) | 298, 371, 1112, 1147, 1291, 1334, 1495, 1648, 1652 |
| NlaIV | GGNNCC | 1 cut(s) | 278 |
| NmuCI | GTSAC | 2 cut(s) | 225, 554 |
| NsiI | ATGCAT | 3 cut(s) | 1114, 1650, 1708 |
| NspI | RCATGY | 3 cut(s) | 1112, 1495, 1648 |
| NspV | TTCGAA | 1 cut(s) | 251 |
| PaeI | GCATGC | 1 cut(s) | 1112 |
| PagI | TCATGA | 2 cut(s) | 294, 1287 |
| PciSI | GCTCTTC | 2 cut(s) | 1200, 1539 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 58 |
| PctI | GAATGC | 1 cut(s) | 1434 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1343 |
| PfeI | GAWTC | 7 cut(s) | 38, 603, 1085, 1538, 1583, 1823, 1967 |
| PfoI | TCCNGGA | 1 cut(s) | 988 |
| PkrI | GCNGC | 1 cut(s) | 755 |
| PleI | GAGTC | 2 cut(s) | 526, 609 |
| PpsI | GAGTC | 2 cut(s) | 526, 609 |
| PsiI | TTATAA | 1 cut(s) | 1992 |
| Psp124BI | GAGCTC | 1 cut(s) | 1098 |
| Psp1406I | AACGTT | 1 cut(s) | 864 |
| Psp6I | CCWGG | 2 cut(s) | 199, 1119 |
| PspEI | GGTNACC | 1 cut(s) | 56 |
| PspGI | CCWGG | 2 cut(s) | 199, 1119 |
| PspN4I | GGNNCC | 1 cut(s) | 278 |
| PspPI | GGNCC | 4 cut(s) | 325, 946, 1054, 1123 |
| RsaI | GTAC | 4 cut(s) | 858, 963, 1615, 1752 |
| RsaNI | GTAC | 4 cut(s) | 857, 962, 1614, 1751 |
| RseI | CAYNNNNRTG | 2 cut(s) | 271, 1131 |
| SacI | GAGCTC | 1 cut(s) | 1098 |
| SapI | GCTCTTC | 2 cut(s) | 1200, 1539 |
| SaqAI | TTAA | 5 cut(s) | 543, 1100, 1790, 1958, 1996 |
| SatI | GCNGC | 1 cut(s) | 754 |
| Sau3AI | GATC | 6 cut(s) | 297, 358, 475, 647, 976, 1498 |
| Sau96I | GGNCC | 4 cut(s) | 325, 946, 1054, 1123 |
| ScaI | AGTACT | 1 cut(s) | 963 |
| SchI | GAGTC | 2 cut(s) | 527, 609 |
| ScrFI | CCNGG | 3 cut(s) | 201, 990, 1121 |
| SduI | GDGCHC | 1 cut(s) | 1098 |
| SfaNI | GCATC | 5 cut(s) | 272, 946, 1445, 1663, 1936 |
| SfcI | CTRYAG | 2 cut(s) | 206, 1782 |
| SfuI | TTCGAA | 1 cut(s) | 251 |
| SinI | GGWCC | 4 cut(s) | 325, 946, 1054, 1123 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 271, 1131 |
| SmlI | CTYRAG | 5 cut(s) | 21, 76, 176, 577, 1099 |
| SmoI | CTYRAG | 5 cut(s) | 21, 76, 176, 577, 1099 |
| SphI | GCATGC | 1 cut(s) | 1112 |
| SspI | AATATT | 2 cut(s) | 257, 1151 |
| SspMI | CTAG | 7 cut(s) | 408, 479, 906, 953, 1163, 1403, 1535 |
| SstI | GAGCTC | 1 cut(s) | 1098 |
| StyD4I | CCNGG | 3 cut(s) | 199, 988, 1119 |
| StyI | CCWWGG | 1 cut(s) | 1627 |
| TaaI | ACNGT | 6 cut(s) | 62, 225, 439, 1316, 1429, 1667 |
| TaiI | ACGT | 5 cut(s) | 158, 867, 1488, 1561, 1750 |
| TaqI | TCGA | 3 cut(s) | 251, 357, 613 |
| TaqII | GACCGA | 1 cut(s) | 1206 |
| TatI | WGTACW | 2 cut(s) | 856, 961 |
| TfiI | GAWTC | 7 cut(s) | 38, 603, 1085, 1538, 1583, 1823, 1967 |
| Tru1I | TTAA | 5 cut(s) | 543, 1100, 1790, 1958, 1996 |
| Tru9I | TTAA | 5 cut(s) | 543, 1100, 1790, 1958, 1996 |
| TseFI | GTSAC | 2 cut(s) | 225, 554 |
| TseI | GCWGC | 1 cut(s) | 753 |
| Tsp45I | GTSAC | 2 cut(s) | 225, 554 |
| TspDTI | ATGAA | 4 cut(s) | 516, 986, 1098, 1304 |
| TspGWI | ACGGA | 1 cut(s) | 982 |
| Vha464I | CTTAAG | 1 cut(s) | 1099 |
| VpaK11BI | GGWCC | 4 cut(s) | 325, 946, 1054, 1123 |
| XapI | RAATTY | 2 cut(s) | 730, 1811 |
| XbaI | TCTAGA | 1 cut(s) | 905 |
| XceI | RCATGY | 3 cut(s) | 1112, 1495, 1648 |
| XmiI | GTMKAC | 3 cut(s) | 936, 1564, 1896 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1343 |
| XspI | CTAG | 7 cut(s) | 408, 479, 906, 953, 1163, 1403, 1535 |
| ZrmI | AGTACT | 1 cut(s) | 963 |
| Zsp2I | ATGCAT | 3 cut(s) | 1114, 1650, 1708 |