resistance protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 125 |
| Acc36I | ACCTGC | 1 cut(s) | 2677 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1808 |
| AccI | GTMKAC | 2 cut(s) | 269, 2656 |
| AccII | CGCG | 1 cut(s) | 2737 |
| AccIII | TCCGGA | 2 cut(s) | 1881, 2902 |
| AciI | CCGC | 6 cut(s) | 52, 96, 373, 631, 2414, 2735 |
| AcoI | YGGCCR | 1 cut(s) | 1543 |
| AdeI | CACNNNGTG | 1 cut(s) | 2676 |
| AfaI | GTAC | 4 cut(s) | 221, 977, 1045, 1276 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 563, 791, 1808, 2277, 2628, 2629, 3181 |
| AflII | CTTAAG | 1 cut(s) | 1028 |
| AflIII | ACRYGT | 1 cut(s) | 2256 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1831 |
| AhlI | ACTAGT | 1 cut(s) | 170 |
| AjnI | CCWGG | 4 cut(s) | 129, 834, 1270, 1783 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1661, 1693 |
| Alw21I | GWGCWC | 4 cut(s) | 30, 3106, 3118, 3459 |
| Alw26I | GTCTC | 5 cut(s) | 621, 883, 1818, 2483, 3323 |
| Ama87I | CYCGRG | 2 cut(s) | 2155, 2610 |
| Aor13HI | TCCGGA | 2 cut(s) | 1881, 2902 |
| AoxI | GGCC | 8 cut(s) | 352, 434, 904, 1182, 1543, 1572, 1761, 2211 |
| ApeKI | GCWGC | 6 cut(s) | 334, 728, 1220, 1895, 2037, 3071 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 485, 517, 1610, 1642 |
| AseI | ATTAAT | 1 cut(s) | 2871 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 195, 1584 |
| AspLEI | GCGC | 3 cut(s) | 1895, 2042, 2739 |
| AsuC2I | CCSGG | 7 cut(s) | 1254, 1664, 2156, 2157, 2278, 2611, 2612 |
| AsuHPI | GGTGA | 4 cut(s) | 542, 851, 971, 1634 |
| AsuII | TTCGAA | 1 cut(s) | 739 |
| AsuNHI | GCTAGC | 2 cut(s) | 1414, 2986 |
| AvaI | CYCGRG | 2 cut(s) | 2155, 2610 |
| AvaII | GGWCC | 8 cut(s) | 493, 571, 648, 1256, 1315, 1690, 1934, 3351 |
| AxyI | CCTNAGG | 2 cut(s) | 603, 1395 |
| BamHI | GGATCC | 2 cut(s) | 1778, 2730 |
| BauI | CACGAG | 1 cut(s) | 3452 |
| BbsI | GAAGAC | 1 cut(s) | 2165 |
| Bbv12I | GWGCWC | 4 cut(s) | 30, 3106, 3118, 3459 |
| BbvCI | CCTCAGC | 1 cut(s) | 360 |
| BbvI | GCAGC | 6 cut(s) | 321, 715, 1207, 1882, 2024, 3083 |
| BceAI | ACGGC | 2 cut(s) | 1279, 1530 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2689, 2723 |
| BciT130I | CCWGG | 4 cut(s) | 131, 836, 1272, 1785 |
| BclI | TGATCA | 1 cut(s) | 2292 |
| BcnI | CCSGG | 7 cut(s) | 1254, 1664, 2156, 2157, 2278, 2611, 2612 |
| BcoDI | GTCTC | 5 cut(s) | 621, 883, 1818, 2483, 3323 |
| BcuI | ACTAGT | 1 cut(s) | 170 |
| BfaI | CTAG | 6 cut(s) | 9, 171, 972, 1415, 1568, 2987 |
| BfmI | CTRYAG | 2 cut(s) | 1221, 3003 |
| BfrI | CTTAAG | 1 cut(s) | 1028 |
| BfuAI | ACCTGC | 1 cut(s) | 2677 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 370, 1190 |
| BglII | AGATCT | 1 cut(s) | 418 |
| BisI | GCNGC | 6 cut(s) | 335, 729, 1221, 1896, 2038, 3072 |
| BlpI | GCTNAGC | 1 cut(s) | 2514 |
| BlsI | GCNGC | 6 cut(s) | 336, 730, 1222, 1897, 2039, 3073 |
| Bme18I | GGWCC | 8 cut(s) | 493, 571, 648, 1256, 1315, 1690, 1934, 3351 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1831 |
| BmeT110I | CYCGRG | 2 cut(s) | 2155, 2610 |
| BmiI | GGNNCC | 6 cut(s) | 227, 905, 1257, 1780, 2617, 2732 |
| BmrI | ACTGGG | 3 cut(s) | 910, 1303, 2682 |
| BmsI | GCATC | 8 cut(s) | 844, 1009, 2035, 2615, 3090, 3157, 3414, 3475 |
| BmtI | GCTAGC | 2 cut(s) | 1418, 2990 |
| BmuI | ACTGGG | 3 cut(s) | 910, 1303, 2682 |
| BoxI | GACNNNNGTC | 1 cut(s) | 542 |
| BpiI | GAAGAC | 1 cut(s) | 2165 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3173, 3205 |
| BpmI | CTGGAG | 1 cut(s) | 2766 |
| Bpu10I | CCTNAGC | 2 cut(s) | 360, 3066 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2514 |
| Bpu14I | TTCGAA | 1 cut(s) | 739 |
| BpuEI | CTTGAG | 5 cut(s) | 14, 525, 929, 1580, 2088 |
| BpuMI | CCSGG | 7 cut(s) | 1254, 1664, 2156, 2157, 2278, 2611, 2612 |
| BsaI | GGTCTC | 1 cut(s) | 1818 |
| BsaWI | WCCGGW | 3 cut(s) | 1881, 2902, 3348 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 599, 629 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 563, 791, 1808, 2277, 2628, 2629, 3181 |
| Bse21I | CCTNAGG | 2 cut(s) | 603, 1395 |
| Bse3DI | GCAATG | 3 cut(s) | 211, 2313, 3237 |
| BseAI | TCCGGA | 2 cut(s) | 1881, 2902 |
| BseBI | CCWGG | 4 cut(s) | 131, 836, 1272, 1785 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 563, 791, 1808, 2277, 2628, 2629, 3181 |
| BseMI | GCAATG | 3 cut(s) | 211, 2313, 3237 |
| BseMII | CTCAG | 6 cut(s) | 374, 429, 1504, 2259, 2388, 3485 |
| BseRI | GAGGAG | 3 cut(s) | 2091, 2843, 3066 |
| BseXI | GCAGC | 6 cut(s) | 321, 715, 1207, 1882, 2024, 3083 |
| BseYI | CCCAGC | 2 cut(s) | 1410, 1719 |
| BsgI | GTGCAG | 1 cut(s) | 3154 |
| Bsh1236I | CGCG | 1 cut(s) | 2737 |
| BshFI | GGCC | 8 cut(s) | 354, 436, 906, 1184, 1545, 1574, 1763, 2213 |
| BsiHKAI | GWGCWC | 4 cut(s) | 30, 3106, 3118, 3459 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2155, 2610 |
| BsiSI | CCGG | 8 cut(s) | 1253, 1663, 1882, 2156, 2277, 2611, 2903, 3349 |
| BslFI | GGGAC | 6 cut(s) | 131, 1269, 1819, 2061, 2127, 2735 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 563, 791, 1808, 2277, 2628, 2629, 3181 |
| BsmAI | GTCTC | 5 cut(s) | 621, 883, 1818, 2483, 3323 |
| BsmFI | GGGAC | 6 cut(s) | 131, 1269, 1819, 2061, 2127, 2735 |
| BsmI | GAATGC | 2 cut(s) | 1532, 2418 |
| BsnI | GGCC | 8 cut(s) | 354, 436, 906, 1184, 1545, 1574, 1763, 2213 |
| Bso31I | GGTCTC | 1 cut(s) | 1818 |
| BsoBI | CYCGRG | 2 cut(s) | 2155, 2610 |
| Bsp119I | TTCGAA | 1 cut(s) | 739 |
| Bsp1286I | GDGCHC | 4 cut(s) | 30, 3106, 3118, 3459 |
| Bsp13I | TCCGGA | 2 cut(s) | 1881, 2902 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2514 |
| Bsp19I | CCATGG | 1 cut(s) | 955 |
| BspACI | CCGC | 6 cut(s) | 52, 96, 373, 631, 2414, 2735 |
| BspANI | GGCC | 8 cut(s) | 354, 436, 906, 1184, 1545, 1574, 1763, 2213 |
| BspCNI | CTCAG | 6 cut(s) | 373, 428, 1503, 2258, 2387, 3484 |
| BspEI | TCCGGA | 2 cut(s) | 1881, 2902 |
| BspFNI | CGCG | 1 cut(s) | 2737 |
| BspHI | TCATGA | 2 cut(s) | 2289, 3482 |
| BspLI | GGNNCC | 6 cut(s) | 227, 905, 1257, 1780, 2617, 2732 |
| BspMAI | CTGCAG | 2 cut(s) | 1225, 3007 |
| BspMI | ACCTGC | 1 cut(s) | 2677 |
| BspOI | GCTAGC | 2 cut(s) | 1418, 2990 |
| BspQI | GCTCTTC | 1 cut(s) | 2511 |
| BspT104I | TTCGAA | 1 cut(s) | 739 |
| BspTI | CTTAAG | 1 cut(s) | 1028 |
| BspTNI | GGTCTC | 1 cut(s) | 1818 |
| BsrDI | GCAATG | 3 cut(s) | 211, 2313, 3237 |
| BssNAI | GTATAC | 1 cut(s) | 270 |
| BssSI | CACGAG | 1 cut(s) | 3452 |
| BssT1I | CCWWGG | 6 cut(s) | 296, 368, 430, 955, 2196, 3224 |
| Bst1107I | GTATAC | 1 cut(s) | 270 |
| Bst2BI | CACGAG | 1 cut(s) | 3452 |
| Bst2UI | CCWGG | 4 cut(s) | 131, 836, 1272, 1785 |
| Bst4CI | ACNGT | 6 cut(s) | 497, 1138, 1584, 1622, 1833, 2576 |
| Bst6I | CTCTTC | 2 cut(s) | 2511, 3321 |
| BstAFI | CTTAAG | 1 cut(s) | 1028 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2318 |
| BstBI | TTCGAA | 1 cut(s) | 739 |
| BstC8I | GCNNGC | 6 cut(s) | 951, 1191, 1416, 2416, 2988, 3102 |
| BstDSI | CCRYGG | 4 cut(s) | 955, 1158, 1167, 1807 |
| BstEII | GGTNACC | 2 cut(s) | 959, 1162 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3179 |
| BstFNI | CGCG | 1 cut(s) | 2737 |
| BstHHI | GCGC | 3 cut(s) | 1895, 2042, 2739 |
| BstMAI | GTCTC | 5 cut(s) | 621, 883, 1818, 2483, 3323 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 370, 1190, 2318, 2444, 2510, 2882, 3071, 3454, 3463 |
| BstNI | CCWGG | 4 cut(s) | 131, 836, 1272, 1785 |
| BstNSI | RCATGY | 1 cut(s) | 2260 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 542 |
| BstPI | GGTNACC | 2 cut(s) | 959, 1162 |
| BstSFI | CTRYAG | 2 cut(s) | 1221, 3003 |
| BstUI | CGCG | 1 cut(s) | 2737 |
| BstV1I | GCAGC | 6 cut(s) | 321, 715, 1207, 1882, 2024, 3083 |
| BstV2I | GAAGAC | 1 cut(s) | 2165 |
| BstX2I | RGATCY | 4 cut(s) | 418, 1613, 1778, 2730 |
| BstYI | RGATCY | 4 cut(s) | 418, 1613, 1778, 2730 |
| BstZ17I | GTATAC | 1 cut(s) | 270 |
| Bsu36I | CCTNAGG | 2 cut(s) | 603, 1395 |
| BsuRI | GGCC | 8 cut(s) | 354, 436, 906, 1184, 1545, 1574, 1763, 2213 |
| BtgI | CCRYGG | 4 cut(s) | 955, 1158, 1167, 1807 |
| BtgZI | GCGATG | 1 cut(s) | 1700 |
| BtsI | GCAGTG | 2 cut(s) | 199, 3443 |
| BtsIMutI | CAGTG | 7 cut(s) | 30, 199, 898, 1829, 1920, 2670, 3443 |
| BveI | ACCTGC | 1 cut(s) | 2677 |
| Cac8I | GCNNGC | 6 cut(s) | 951, 1191, 1416, 2416, 2988, 3102 |
| CciI | TCATGA | 2 cut(s) | 2289, 3482 |
| CfoI | GCGC | 3 cut(s) | 1895, 2042, 2739 |
| Cfr9I | CCCGGG | 2 cut(s) | 2155, 2610 |
| Csp6I | GTAC | 4 cut(s) | 220, 976, 1044, 1275 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1363, 1398 |
| CviQI | GTAC | 4 cut(s) | 220, 976, 1044, 1275 |
| DraI | TTTAAA | 1 cut(s) | 2341 |
| DraIII | CACNNNGTG | 1 cut(s) | 2676 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 125 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1831 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 125 |
| EaeI | YGGCCR | 1 cut(s) | 1543 |
| Eam1104I | CTCTTC | 2 cut(s) | 2511, 3321 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1831 |
| EarI | CTCTTC | 2 cut(s) | 2511, 3321 |
| EciI | GGCGGA | 1 cut(s) | 388 |
| Eco130I | CCWWGG | 6 cut(s) | 296, 368, 430, 955, 2196, 3224 |
| Eco31I | GGTCTC | 1 cut(s) | 1818 |
| Eco47I | GGWCC | 8 cut(s) | 493, 571, 648, 1256, 1315, 1690, 1934, 3351 |
| Eco81I | CCTNAGG | 2 cut(s) | 603, 1395 |
| Eco88I | CYCGRG | 2 cut(s) | 2155, 2610 |
| Eco91I | GGTNACC | 2 cut(s) | 959, 1162 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3179 |
| EcoO109I | RGGNCCY | 1 cut(s) | 904 |
| EcoO65I | GGTNACC | 2 cut(s) | 959, 1162 |
| EcoRI | GAATTC | 1 cut(s) | 822 |
| EcoRII | CCWGG | 4 cut(s) | 129, 834, 1270, 1783 |
| EcoT14I | CCWWGG | 6 cut(s) | 296, 368, 430, 955, 2196, 3224 |
| EcoT22I | ATGCAT | 1 cut(s) | 1002 |
| ErhI | CCWWGG | 6 cut(s) | 296, 368, 430, 955, 2196, 3224 |
| FaqI | GGGAC | 6 cut(s) | 131, 1269, 1819, 2061, 2127, 2735 |
| FauI | CCCGC | 2 cut(s) | 2407, 2742 |
| FauNDI | CATATG | 1 cut(s) | 1128 |
| FbaI | TGATCA | 1 cut(s) | 2292 |
| FblI | GTMKAC | 2 cut(s) | 269, 2656 |
| Fnu4HI | GCNGC | 6 cut(s) | 335, 729, 1221, 1896, 2038, 3072 |
| Fsp4HI | GCNGC | 6 cut(s) | 335, 729, 1221, 1896, 2038, 3072 |
| FspBI | CTAG | 6 cut(s) | 9, 171, 972, 1415, 1568, 2987 |
| GlaI | GCGC | 3 cut(s) | 1894, 2041, 2738 |
| GluI | GCNGC | 6 cut(s) | 335, 729, 1221, 1896, 2038, 3072 |
| GsaI | CCCAGC | 2 cut(s) | 1414, 1723 |
| GsuI | CTGGAG | 1 cut(s) | 2766 |
| HaeIII | GGCC | 8 cut(s) | 354, 436, 906, 1184, 1545, 1574, 1763, 2213 |
| HapII | CCGG | 8 cut(s) | 1253, 1663, 1882, 2156, 2277, 2611, 2903, 3349 |
| HhaI | GCGC | 3 cut(s) | 1895, 2042, 2739 |
| Hin6I | GCGC | 3 cut(s) | 1893, 2040, 2737 |
| HinP1I | GCGC | 3 cut(s) | 1893, 2040, 2737 |
| HincII | GTYRAC | 4 cut(s) | 668, 1053, 2113, 2657 |
| HindII | GTYRAC | 4 cut(s) | 668, 1053, 2113, 2657 |
| HindIII | AAGCTT | 2 cut(s) | 1110, 1653 |
| HpaI | GTTAAC | 1 cut(s) | 1053 |
| HpaII | CCGG | 8 cut(s) | 1253, 1663, 1882, 2156, 2277, 2611, 2903, 3349 |
| HphI | GGTGA | 4 cut(s) | 542, 851, 971, 1634 |
| Hpy166II | GTNNAC | 8 cut(s) | 270, 668, 1053, 1814, 2113, 2262, 2657, 3441 |
| Hpy8I | GTNNAC | 8 cut(s) | 270, 668, 1053, 1814, 2113, 2262, 2657, 3441 |
| Hpy99I | CGWCG | 1 cut(s) | 1008 |
| HpyAV | CCTTC | 9 cut(s) | 563, 746, 1515, 1703, 2358, 2645, 2750, 2754, 2758 |
| HpyCH4III | ACNGT | 6 cut(s) | 497, 1138, 1584, 1622, 1833, 2576 |
| HpyCH4IV | ACGT | 1 cut(s) | 487 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 370, 1190, 2318, 2444, 2510, 2882, 3071, 3454, 3463 |
| HpySE526I | ACGT | 1 cut(s) | 487 |
| HspAI | GCGC | 3 cut(s) | 1893, 2040, 2737 |
| Kpn2I | TCCGGA | 2 cut(s) | 1881, 2902 |
| Ksp22I | TGATCA | 1 cut(s) | 2292 |
| KspAI | GTTAAC | 1 cut(s) | 1053 |
| LguI | GCTCTTC | 1 cut(s) | 2511 |
| LmnI | GCTCC | 1 cut(s) | 3079 |
| Lsp1109I | GCAGC | 6 cut(s) | 321, 715, 1207, 1882, 2024, 3083 |
| LweI | GCATC | 8 cut(s) | 844, 1009, 2035, 2615, 3090, 3157, 3414, 3475 |
| MaeI | CTAG | 6 cut(s) | 9, 171, 972, 1415, 1568, 2987 |
| MaeII | ACGT | 1 cut(s) | 487 |
| MaeIII | GTNAC | 4 cut(s) | 959, 1162, 1744, 1753 |
| MfeI | CAATTG | 3 cut(s) | 1434, 1999, 3198 |
| MflI | RGATCY | 4 cut(s) | 418, 1613, 1778, 2730 |
| MhlI | GDGCHC | 4 cut(s) | 30, 3106, 3118, 3459 |
| MlyI | GAGTC | 6 cut(s) | 532, 833, 1482, 1961, 2149, 2831 |
| MmeI | TCCRAC | 5 cut(s) | 104, 708, 986, 1142, 2504 |
| Mph1103I | ATGCAT | 1 cut(s) | 1002 |
| MroI | TCCGGA | 2 cut(s) | 1881, 2902 |
| MroXI | GAANNNNTTC | 2 cut(s) | 195, 1584 |
| MslI | CAYNNNNRTG | 5 cut(s) | 66, 204, 1172, 1568, 2123 |
| MspCI | CTTAAG | 1 cut(s) | 1028 |
| MspI | CCGG | 8 cut(s) | 1253, 1663, 1882, 2156, 2277, 2611, 2903, 3349 |
| MunI | CAATTG | 3 cut(s) | 1434, 1999, 3198 |
| Mva1269I | GAATGC | 2 cut(s) | 1532, 2418 |
| MvaI | CCWGG | 4 cut(s) | 131, 836, 1272, 1785 |
| MvnI | CGCG | 1 cut(s) | 2737 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 370, 1190, 2318, 2444, 2510, 2882, 3071, 3454, 3463 |
| NciI | CCSGG | 7 cut(s) | 1254, 1664, 2156, 2157, 2278, 2611, 2612 |
| NcoI | CCATGG | 1 cut(s) | 955 |
| NdeI | CATATG | 1 cut(s) | 1128 |
| NheI | GCTAGC | 2 cut(s) | 1414, 2986 |
| NlaIV | GGNNCC | 6 cut(s) | 227, 905, 1257, 1780, 2617, 2732 |
| NmeAIII | GCCGAG | 1 cut(s) | 3442 |
| NmuCI | GTSAC | 2 cut(s) | 959, 1753 |
| NsiI | ATGCAT | 1 cut(s) | 1002 |
| NspI | RCATGY | 1 cut(s) | 2260 |
| NspV | TTCGAA | 1 cut(s) | 739 |
| PagI | TCATGA | 2 cut(s) | 2289, 3482 |
| PciI | ACATGT | 1 cut(s) | 2256 |
| PciSI | GCTCTTC | 1 cut(s) | 2511 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 493 |
| PctI | GAATGC | 2 cut(s) | 1532, 2418 |
| PdmI | GAANNNNTTC | 2 cut(s) | 195, 1584 |
| PfeI | GAWTC | 9 cut(s) | 238, 1018, 1360, 1552, 2915, 2972, 3138, 3426, 3433 |
| PflFI | GACNNNGTC | 1 cut(s) | 2840 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1808 |
| PfoI | TCCNGGA | 2 cut(s) | 834, 1252 |
| PkrI | GCNGC | 6 cut(s) | 336, 730, 1222, 1897, 2039, 3073 |
| PleI | GAGTC | 6 cut(s) | 532, 833, 1482, 1961, 2148, 2831 |
| PpsI | GAGTC | 6 cut(s) | 532, 833, 1482, 1961, 2148, 2831 |
| PscI | ACATGT | 1 cut(s) | 2256 |
| PshAI | GACNNNNGTC | 1 cut(s) | 542 |
| PshBI | ATTAAT | 1 cut(s) | 2871 |
| Psp6I | CCWGG | 4 cut(s) | 129, 834, 1270, 1783 |
| PspEI | GGTNACC | 2 cut(s) | 959, 1162 |
| PspFI | CCCAGC | 2 cut(s) | 1410, 1719 |
| PspGI | CCWGG | 4 cut(s) | 129, 834, 1270, 1783 |
| PspN4I | GGNNCC | 6 cut(s) | 227, 905, 1257, 1780, 2617, 2732 |
| PstI | CTGCAG | 2 cut(s) | 1225, 3007 |
| PsuI | RGATCY | 4 cut(s) | 418, 1613, 1778, 2730 |
| PsyI | GACNNNGTC | 1 cut(s) | 2840 |
| RsaI | GTAC | 4 cut(s) | 221, 977, 1045, 1276 |
| RsaNI | GTAC | 4 cut(s) | 220, 976, 1044, 1275 |
| RseI | CAYNNNNRTG | 5 cut(s) | 66, 204, 1172, 1568, 2123 |
| SalI | GTCGAC | 1 cut(s) | 2655 |
| SapI | GCTCTTC | 1 cut(s) | 2511 |
| SatI | GCNGC | 6 cut(s) | 335, 729, 1221, 1896, 2038, 3072 |
| SbfI | CCTGCAGG | 1 cut(s) | 3007 |
| SchI | GAGTC | 6 cut(s) | 532, 833, 1482, 1961, 2149, 2831 |
| SdaI | CCTGCAGG | 1 cut(s) | 3007 |
| SduI | GDGCHC | 4 cut(s) | 30, 3106, 3118, 3459 |
| SfaNI | GCATC | 8 cut(s) | 844, 1009, 2035, 2615, 3090, 3157, 3414, 3475 |
| SfcI | CTRYAG | 2 cut(s) | 1221, 3003 |
| SfuI | TTCGAA | 1 cut(s) | 739 |
| SinI | GGWCC | 8 cut(s) | 493, 571, 648, 1256, 1315, 1690, 1934, 3351 |
| SmaI | CCCGGG | 2 cut(s) | 2157, 2612 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 66, 204, 1172, 1568, 2123 |
| SmlI | CTYRAG | 6 cut(s) | 29, 540, 908, 1028, 1595, 2103 |
| SmoI | CTYRAG | 6 cut(s) | 29, 540, 908, 1028, 1595, 2103 |
| SpeI | ACTAGT | 1 cut(s) | 170 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 3007 |
| SsiI | CCGC | 6 cut(s) | 52, 96, 373, 631, 2414, 2735 |
| SspI | AATATT | 1 cut(s) | 2230 |
| SspMI | CTAG | 6 cut(s) | 9, 171, 972, 1415, 1568, 2987 |
| StyI | CCWWGG | 6 cut(s) | 296, 368, 430, 955, 2196, 3224 |
| TaaI | ACNGT | 6 cut(s) | 497, 1138, 1584, 1622, 1833, 2576 |
| TaiI | ACGT | 1 cut(s) | 490 |
| TaqI | TCGA | 6 cut(s) | 739, 820, 2191, 2601, 2656, 2709 |
| TaqII | GACCGA | 1 cut(s) | 2949 |
| TfiI | GAWTC | 9 cut(s) | 238, 1018, 1360, 1552, 2915, 2972, 3138, 3426, 3433 |
| TscAI | CASTG | 7 cut(s) | 30, 206, 905, 1836, 1920, 2677, 3450 |
| TseFI | GTSAC | 2 cut(s) | 959, 1753 |
| TseI | GCWGC | 6 cut(s) | 334, 728, 1220, 1895, 2037, 3071 |
| Tsp45I | GTSAC | 2 cut(s) | 959, 1753 |
| TspGWI | ACGGA | 1 cut(s) | 1184 |
| TspMI | CCCGGG | 2 cut(s) | 2155, 2610 |
| TspRI | CASTG | 7 cut(s) | 30, 206, 905, 1836, 1920, 2677, 3450 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2840 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1808 |
| Vha464I | CTTAAG | 1 cut(s) | 1028 |
| VpaK11BI | GGWCC | 8 cut(s) | 493, 571, 648, 1256, 1315, 1690, 1934, 3351 |
| VspI | ATTAAT | 1 cut(s) | 2871 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3179 |
| XceI | RCATGY | 1 cut(s) | 2260 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 444, 2550, 2631 |
| XmaI | CCCGGG | 2 cut(s) | 2155, 2610 |
| XmiI | GTMKAC | 2 cut(s) | 269, 2656 |
| XmnI | GAANNNNTTC | 2 cut(s) | 195, 1584 |
| XspI | CTAG | 6 cut(s) | 9, 171, 972, 1415, 1568, 2987 |
| Zsp2I | ATGCAT | 1 cut(s) | 1002 |