TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 25 - 190 | 9.4e-49 | TIR domain |
| TIR_2 | PF13676 | 27 - 138 | 2.6e-16 | TIR domain |
| NB-ARC | PF00931 | 206 - 376 | 7.2e-20 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 445 - 516 | 9.2e-19 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 657 - 763 | 4.1e-08 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 729 |
| AatII | GACGTC | 1 cut(s) | 363 |
| Acc16I | TGCGCA | 2 cut(s) | 471, 1730 |
| Acc65I | GGTACC | 1 cut(s) | 2866 |
| AccB1I | GGYRCC | 2 cut(s) | 285, 2866 |
| AccII | CGCG | 2 cut(s) | 238, 407 |
| AciI | CCGC | 5 cut(s) | 138, 1182, 1667, 2433, 3555 |
| AcsI | RAATTY | 9 cut(s) | 609, 736, 1629, 1784, 1820, 1938, 1990, 2241, 3222 |
| AcuI | CTGAAG | 2 cut(s) | 2051, 3077 |
| AcvI | CACGTG | 1 cut(s) | 3434 |
| AcyI | GRCGYC | 1 cut(s) | 360 |
| AfaI | GTAC | 9 cut(s) | 930, 1173, 1602, 1661, 1761, 2259, 2669, 2868, 3180 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1142, 2810 |
| AflIII | ACRYGT | 3 cut(s) | 78, 3181, 3431 |
| AjiI | CACGTC | 2 cut(s) | 79, 3109 |
| AjnI | CCWGG | 7 cut(s) | 487, 1662, 1863, 2536, 2848, 2869, 3361 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2113, 2145 |
| AleI | CACNNNNGTG | 1 cut(s) | 1182 |
| Alw21I | GWGCWC | 1 cut(s) | 19 |
| Alw26I | GTCTC | 3 cut(s) | 165, 814, 2519 |
| Ama87I | CYCGRG | 1 cut(s) | 1678 |
| AoxI | GGCC | 4 cut(s) | 324, 1963, 2479, 2985 |
| ApaI | GGGCCC | 1 cut(s) | 2989 |
| ApeKI | GCWGC | 2 cut(s) | 32, 1890 |
| ApoI | RAATTY | 9 cut(s) | 609, 736, 1629, 1784, 1820, 1938, 1990, 2241, 3222 |
| AseI | ATTAAT | 1 cut(s) | 633 |
| AsiSI | GCGATCGC | 1 cut(s) | 405 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1785 |
| Asp718I | GGTACC | 1 cut(s) | 2866 |
| AspA2I | CCTAGG | 1 cut(s) | 2387 |
| AspLEI | GCGC | 2 cut(s) | 472, 1731 |
| AspS9I | GGNCC | 5 cut(s) | 1129, 2985, 2986, 3071, 3386 |
| AsuC2I | CCSGG | 1 cut(s) | 996 |
| AsuHPI | GGTGA | 5 cut(s) | 110, 119, 2645, 2800, 3325 |
| AvaI | CYCGRG | 1 cut(s) | 1678 |
| AvaII | GGWCC | 3 cut(s) | 1129, 3071, 3386 |
| AvrII | CCTAGG | 1 cut(s) | 2387 |
| BaeGI | GKGCMC | 2 cut(s) | 522, 2989 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2850, 2883 |
| BanI | GGYRCC | 2 cut(s) | 285, 2866 |
| BanII | GRGCYC | 2 cut(s) | 19, 2989 |
| BauI | CACGAG | 2 cut(s) | 419, 521 |
| BbrPI | CACGTG | 1 cut(s) | 3434 |
| BbsI | GAAGAC | 5 cut(s) | 108, 204, 343, 1916, 3465 |
| Bbv12I | GWGCWC | 1 cut(s) | 19 |
| BbvI | GCAGC | 2 cut(s) | 19, 1902 |
| BccI | CCATC | 8 cut(s) | 233, 376, 644, 1140, 1787, 1797, 1936, 2668 |
| BceAI | ACGGC | 2 cut(s) | 339, 3100 |
| BciT130I | CCWGG | 7 cut(s) | 489, 1664, 1865, 2538, 2850, 2871, 3363 |
| BciVI | GTATCC | 2 cut(s) | 1563, 2548 |
| BclI | TGATCA | 2 cut(s) | 124, 2706 |
| BcnI | CCSGG | 1 cut(s) | 996 |
| BcoDI | GTCTC | 3 cut(s) | 165, 814, 2519 |
| BfaI | CTAG | 6 cut(s) | 1020, 1409, 1959, 2133, 2261, 2388 |
| BfmI | CTRYAG | 2 cut(s) | 2268, 3477 |
| BfuI | GTATCC | 2 cut(s) | 1563, 2548 |
| BglII | AGATCT | 3 cut(s) | 481, 2470, 2623 |
| BisI | GCNGC | 2 cut(s) | 33, 1891 |
| BlnI | CCTAGG | 1 cut(s) | 2387 |
| BlsI | GCNGC | 2 cut(s) | 34, 1892 |
| BmcAI | AGTACT | 1 cut(s) | 2259 |
| Bme1390I | CCNGG | 8 cut(s) | 489, 996, 1664, 1865, 2538, 2850, 2871, 3363 |
| Bme18I | GGWCC | 3 cut(s) | 1129, 3071, 3386 |
| BmeT110I | CYCGRG | 1 cut(s) | 1678 |
| BmgBI | CACGTC | 2 cut(s) | 79, 3109 |
| BmgT120I | GGNCC | 5 cut(s) | 1129, 2985, 2986, 3071, 3386 |
| BmiI | GGNNCC | 7 cut(s) | 287, 796, 1216, 2746, 2868, 2945, 2987 |
| BmrFI | CCNGG | 8 cut(s) | 489, 996, 1664, 1865, 2538, 2850, 2871, 3363 |
| BmrI | ACTGGG | 1 cut(s) | 2983 |
| BmsI | GCATC | 9 cut(s) | 966, 1488, 1510, 1588, 1716, 2368, 3492, 3518, 3549 |
| BmuI | ACTGGG | 1 cut(s) | 2983 |
| BpiI | GAAGAC | 5 cut(s) | 108, 204, 343, 1916, 3465 |
| BpmI | CTGGAG | 3 cut(s) | 236, 800, 1730 |
| BpuEI | CTTGAG | 3 cut(s) | 106, 2158, 2238 |
| BpuMI | CCSGG | 1 cut(s) | 996 |
| BsaAI | YACGTR | 1 cut(s) | 3434 |
| BsaBI | GATNNNNATC | 1 cut(s) | 942 |
| BsaHI | GRCGYC | 1 cut(s) | 360 |
| BsaJI | CCNNGG | 5 cut(s) | 1209, 2387, 2739, 2862, 2947 |
| BsaWI | WCCGGW | 1 cut(s) | 146 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1142, 2810 |
| Bse118I | RCCGGY | 1 cut(s) | 346 |
| Bse1I | ACTGG | 3 cut(s) | 2192, 2989, 3020 |
| Bse3DI | GCAATG | 3 cut(s) | 711, 2285, 2411 |
| Bse8I | GATNNNNATC | 1 cut(s) | 942 |
| BseBI | CCWGG | 7 cut(s) | 489, 1664, 1865, 2538, 2850, 2871, 3363 |
| BseDI | CCNNGG | 5 cut(s) | 1209, 2387, 2739, 2862, 2947 |
| BseJI | GATNNNNATC | 1 cut(s) | 942 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1142, 2810 |
| BseMI | GCAATG | 3 cut(s) | 711, 2285, 2411 |
| BseMII | CTCAG | 4 cut(s) | 77, 1295, 1940, 2953 |
| BseNI | ACTGG | 3 cut(s) | 2192, 2989, 3020 |
| BseRI | GAGGAG | 2 cut(s) | 207, 575 |
| BseSI | GKGCMC | 2 cut(s) | 522, 2989 |
| BseXI | GCAGC | 2 cut(s) | 19, 1902 |
| BsgI | GTGCAG | 2 cut(s) | 2317, 2828 |
| Bsh1236I | CGCG | 2 cut(s) | 238, 407 |
| Bsh1285I | CGRYCG | 1 cut(s) | 405 |
| BshFI | GGCC | 4 cut(s) | 326, 1965, 2481, 2987 |
| BshNI | GGYRCC | 2 cut(s) | 285, 2866 |
| BsiEI | CGRYCG | 1 cut(s) | 405 |
| BsiHKAI | GWGCWC | 1 cut(s) | 19 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1678 |
| BsiSI | CCGG | 3 cut(s) | 147, 347, 995 |
| BslFI | GGGAC | 3 cut(s) | 2312, 2999, 3509 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1142, 2810 |
| BsmAI | GTCTC | 3 cut(s) | 165, 814, 2519 |
| BsmBI | CGTCTC | 1 cut(s) | 165 |
| BsmFI | GGGAC | 3 cut(s) | 2312, 2999, 3509 |
| BsmI | GAATGC | 4 cut(s) | 454, 1421, 1440, 3087 |
| BsnI | GGCC | 4 cut(s) | 326, 1965, 2481, 2987 |
| BsoBI | CYCGRG | 1 cut(s) | 1678 |
| Bsp120I | GGGCCC | 1 cut(s) | 2985 |
| Bsp1286I | GDGCHC | 3 cut(s) | 19, 522, 2989 |
| Bsp1407I | TGTACA | 1 cut(s) | 1759 |
| Bsp19I | CCATGG | 1 cut(s) | 2739 |
| Bsp68I | TCGCGA | 1 cut(s) | 238 |
| BspACI | CCGC | 5 cut(s) | 138, 1182, 1667, 2433, 3555 |
| BspANI | GGCC | 4 cut(s) | 326, 1965, 2481, 2987 |
| BspCNI | CTCAG | 4 cut(s) | 76, 1296, 1941, 2952 |
| BspFNI | CGCG | 2 cut(s) | 238, 407 |
| BspHI | TCATGA | 1 cut(s) | 613 |
| BspLI | GGNNCC | 7 cut(s) | 287, 796, 1216, 2746, 2868, 2945, 2987 |
| BspMAI | CTGCAG | 1 cut(s) | 3481 |
| BspQI | GCTCTTC | 1 cut(s) | 1206 |
| BspT107I | GGYRCC | 2 cut(s) | 285, 2866 |
| BsrDI | GCAATG | 3 cut(s) | 711, 2285, 2411 |
| BsrFI | RCCGGY | 1 cut(s) | 346 |
| BsrGI | TGTACA | 1 cut(s) | 1759 |
| BsrI | ACTGG | 3 cut(s) | 2192, 2989, 3020 |
| BssAI | RCCGGY | 1 cut(s) | 346 |
| BssECI | CCNNGG | 5 cut(s) | 1209, 2387, 2739, 2862, 2947 |
| BssNI | GRCGYC | 1 cut(s) | 360 |
| BssSI | CACGAG | 2 cut(s) | 419, 521 |
| BssT1I | CCWWGG | 3 cut(s) | 1209, 2387, 2739 |
| Bst2BI | CACGAG | 2 cut(s) | 419, 521 |
| Bst2UI | CCWGG | 7 cut(s) | 489, 1664, 1865, 2538, 2850, 2871, 3363 |
| Bst4CI | ACNGT | 4 cut(s) | 2567, 2794, 2920, 3383 |
| Bst6I | CTCTTC | 5 cut(s) | 280, 422, 1206, 1519, 2683 |
| BstACI | GRCGYC | 1 cut(s) | 360 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2815 |
| BstAUI | TGTACA | 1 cut(s) | 1759 |
| BstBAI | YACGTR | 1 cut(s) | 3434 |
| BstC8I | GCNNGC | 3 cut(s) | 1116, 2032, 3507 |
| BstDSI | CCRYGG | 1 cut(s) | 2739 |
| BstEII | GGTNACC | 1 cut(s) | 1468 |
| BstFNI | CGCG | 2 cut(s) | 238, 407 |
| BstHHI | GCGC | 2 cut(s) | 472, 1731 |
| BstMAI | GTCTC | 3 cut(s) | 165, 814, 2519 |
| BstMCI | CGRYCG | 1 cut(s) | 405 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 476, 1049, 2815, 3258 |
| BstNI | CCWGG | 7 cut(s) | 489, 1664, 1865, 2538, 2850, 2871, 3363 |
| BstNSI | RCATGY | 5 cut(s) | 1118, 1368, 1654, 3081, 3185 |
| BstPI | GGTNACC | 1 cut(s) | 1468 |
| BstSCI | CCNGG | 8 cut(s) | 487, 994, 1662, 1863, 2536, 2848, 2869, 3361 |
| BstSFI | CTRYAG | 2 cut(s) | 2268, 3477 |
| BstSLI | GKGCMC | 2 cut(s) | 522, 2989 |
| BstUI | CGCG | 2 cut(s) | 238, 407 |
| BstV1I | GCAGC | 2 cut(s) | 19, 1902 |
| BstV2I | GAAGAC | 5 cut(s) | 108, 204, 343, 1916, 3465 |
| BstX2I | RGATCY | 6 cut(s) | 481, 2425, 2470, 2623, 3063, 3280 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1184, 1961, 2996 |
| BstYI | RGATCY | 6 cut(s) | 481, 2425, 2470, 2623, 3063, 3280 |
| BsuI | GTATCC | 2 cut(s) | 1563, 2548 |
| BsuRI | GGCC | 4 cut(s) | 326, 1965, 2481, 2987 |
| BtgI | CCRYGG | 1 cut(s) | 2739 |
| BtgZI | GCGATG | 1 cut(s) | 3174 |
| BtrI | CACGTC | 2 cut(s) | 79, 3109 |
| BtsIMutI | CAGTG | 2 cut(s) | 120, 2199 |
| BtuMI | TCGCGA | 1 cut(s) | 238 |
| Cac8I | GCNNGC | 3 cut(s) | 1116, 2032, 3507 |
| CciI | TCATGA | 1 cut(s) | 613 |
| CfoI | GCGC | 2 cut(s) | 472, 1731 |
| Cfr10I | RCCGGY | 1 cut(s) | 346 |
| Cfr13I | GGNCC | 5 cut(s) | 1129, 2985, 2986, 3071, 3386 |
| Csp6I | GTAC | 9 cut(s) | 929, 1172, 1601, 1660, 1760, 2258, 2668, 2867, 3179 |
| CviQI | GTAC | 9 cut(s) | 929, 1172, 1601, 1660, 1760, 2258, 2668, 2867, 3179 |
| DraI | TTTAAA | 1 cut(s) | 1080 |
| Eam1104I | CTCTTC | 5 cut(s) | 280, 422, 1206, 1519, 2683 |
| EarI | CTCTTC | 5 cut(s) | 280, 422, 1206, 1519, 2683 |
| EciI | GGCGGA | 1 cut(s) | 1682 |
| Ecl136II | GAGCTC | 1 cut(s) | 17 |
| Eco130I | CCWWGG | 3 cut(s) | 1209, 2387, 2739 |
| Eco147I | AGGCCT | 1 cut(s) | 2481 |
| Eco24I | GRGCYC | 2 cut(s) | 19, 2989 |
| Eco47I | GGWCC | 3 cut(s) | 1129, 3071, 3386 |
| Eco53kI | GAGCTC | 1 cut(s) | 17 |
| Eco57I | CTGAAG | 2 cut(s) | 2051, 3077 |
| Eco72I | CACGTG | 1 cut(s) | 3434 |
| Eco88I | CYCGRG | 1 cut(s) | 1678 |
| Eco91I | GGTNACC | 1 cut(s) | 1468 |
| EcoICRI | GAGCTC | 1 cut(s) | 17 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2985 |
| EcoO65I | GGTNACC | 1 cut(s) | 1468 |
| EcoRI | GAATTC | 2 cut(s) | 609, 3222 |
| EcoRII | CCWGG | 7 cut(s) | 487, 1662, 1863, 2536, 2848, 2869, 3361 |
| EcoT14I | CCWWGG | 3 cut(s) | 1209, 2387, 2739 |
| EcoT22I | ATGCAT | 4 cut(s) | 454, 1503, 1717, 2383 |
| EcoT38I | GRGCYC | 2 cut(s) | 19, 2989 |
| ErhI | CCWWGG | 3 cut(s) | 1209, 2387, 2739 |
| Esp3I | CGTCTC | 1 cut(s) | 165 |
| FaqI | GGGAC | 3 cut(s) | 2312, 2999, 3509 |
| FauNDI | CATATG | 2 cut(s) | 948, 2057 |
| FbaI | TGATCA | 2 cut(s) | 124, 2706 |
| Fnu4HI | GCNGC | 2 cut(s) | 33, 1891 |
| FriOI | GRGCYC | 2 cut(s) | 19, 2989 |
| Fsp4HI | GCNGC | 2 cut(s) | 33, 1891 |
| FspBI | CTAG | 6 cut(s) | 1020, 1409, 1959, 2133, 2261, 2388 |
| FspI | TGCGCA | 2 cut(s) | 471, 1730 |
| GlaI | GCGC | 2 cut(s) | 471, 1730 |
| GluI | GCNGC | 2 cut(s) | 33, 1891 |
| GsuI | CTGGAG | 3 cut(s) | 236, 800, 1730 |
| HaeIII | GGCC | 4 cut(s) | 326, 1965, 2481, 2987 |
| HapII | CCGG | 3 cut(s) | 147, 347, 995 |
| HhaI | GCGC | 2 cut(s) | 472, 1731 |
| Hin1I | GRCGYC | 1 cut(s) | 360 |
| Hin6I | GCGC | 2 cut(s) | 470, 1729 |
| HinP1I | GCGC | 2 cut(s) | 470, 1729 |
| HincII | GTYRAC | 1 cut(s) | 3189 |
| HindII | GTYRAC | 1 cut(s) | 3189 |
| HindIII | AAGCTT | 1 cut(s) | 2225 |
| HpaII | CCGG | 3 cut(s) | 147, 347, 995 |
| HphI | GGTGA | 5 cut(s) | 110, 119, 2645, 2800, 3325 |
| Hpy166II | GTNNAC | 5 cut(s) | 1187, 2080, 2197, 3189, 3386 |
| Hpy8I | GTNNAC | 5 cut(s) | 1187, 2080, 2197, 3189, 3386 |
| Hpy99I | CGWCG | 5 cut(s) | 80, 179, 296, 362, 365 |
| HpyCH4III | ACNGT | 4 cut(s) | 2567, 2794, 2920, 3383 |
| HpyCH4IV | ACGT | 5 cut(s) | 78, 360, 1564, 3108, 3433 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 476, 1049, 2815, 3258 |
| HpySE526I | ACGT | 5 cut(s) | 78, 360, 1564, 3108, 3433 |
| Hsp92I | GRCGYC | 1 cut(s) | 360 |
| HspAI | GCGC | 2 cut(s) | 470, 1729 |
| KpnI | GGTACC | 1 cut(s) | 2870 |
| Ksp22I | TGATCA | 2 cut(s) | 124, 2706 |
| LguI | GCTCTTC | 1 cut(s) | 1206 |
| LmnI | GCTCC | 5 cut(s) | 149, 248, 393, 2121, 2744 |
| Lsp1109I | GCAGC | 2 cut(s) | 19, 1902 |
| LweI | GCATC | 9 cut(s) | 966, 1488, 1510, 1588, 1716, 2368, 3492, 3518, 3549 |
| MaeI | CTAG | 6 cut(s) | 1020, 1409, 1959, 2133, 2261, 2388 |
| MaeII | ACGT | 5 cut(s) | 78, 360, 1564, 3108, 3433 |
| MfeI | CAATTG | 3 cut(s) | 1431, 2682, 3146 |
| MflI | RGATCY | 6 cut(s) | 481, 2425, 2470, 2623, 3063, 3280 |
| MhlI | GDGCHC | 3 cut(s) | 19, 522, 2989 |
| MlyI | GAGTC | 7 cut(s) | 533, 630, 1313, 1841, 2359, 2744, 3455 |
| MmeI | TCCRAC | 2 cut(s) | 253, 3378 |
| Mph1103I | ATGCAT | 4 cut(s) | 454, 1503, 1717, 2383 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1785 |
| MslI | CAYNNNNRTG | 6 cut(s) | 1182, 1655, 1959, 2753, 2823, 3306 |
| MspA1I | CMGCKG | 2 cut(s) | 1182, 1303 |
| MspI | CCGG | 3 cut(s) | 147, 347, 995 |
| MspR9I | CCNGG | 8 cut(s) | 489, 996, 1664, 1865, 2538, 2850, 2871, 3363 |
| MunI | CAATTG | 3 cut(s) | 1431, 2682, 3146 |
| Mva1269I | GAATGC | 4 cut(s) | 454, 1421, 1440, 3087 |
| MvaI | CCWGG | 7 cut(s) | 489, 1664, 1865, 2538, 2850, 2871, 3363 |
| MvnI | CGCG | 2 cut(s) | 238, 407 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 476, 1049, 2815, 3258 |
| NciI | CCSGG | 1 cut(s) | 996 |
| NcoI | CCATGG | 1 cut(s) | 2739 |
| NdeI | CATATG | 2 cut(s) | 948, 2057 |
| NlaIV | GGNNCC | 7 cut(s) | 287, 796, 1216, 2746, 2868, 2945, 2987 |
| NmuCI | GTSAC | 5 cut(s) | 1514, 2595, 2788, 3095, 3355 |
| NruI | TCGCGA | 1 cut(s) | 238 |
| NsbI | TGCGCA | 2 cut(s) | 471, 1730 |
| NsiI | ATGCAT | 4 cut(s) | 454, 1503, 1717, 2383 |
| NspI | RCATGY | 5 cut(s) | 1118, 1368, 1654, 3081, 3185 |
| OliI | CACNNNNGTG | 1 cut(s) | 1182 |
| PaeI | GCATGC | 1 cut(s) | 1118 |
| PaeR7I | CTCGAG | 1 cut(s) | 1678 |
| PagI | TCATGA | 1 cut(s) | 613 |
| PceI | AGGCCT | 1 cut(s) | 2481 |
| PciI | ACATGT | 1 cut(s) | 3181 |
| PciSI | GCTCTTC | 1 cut(s) | 1206 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 166 |
| PctI | GAATGC | 4 cut(s) | 454, 1421, 1440, 3087 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1785 |
| PflFI | GACNNNGTC | 1 cut(s) | 3011 |
| PfoI | TCCNGGA | 3 cut(s) | 487, 994, 2848 |
| PkrI | GCNGC | 2 cut(s) | 34, 1892 |
| Ple19I | CGATCG | 1 cut(s) | 405 |
| PleI | GAGTC | 7 cut(s) | 532, 629, 1313, 1840, 2358, 2743, 3455 |
| PmaCI | CACGTG | 1 cut(s) | 3434 |
| PmlI | CACGTG | 1 cut(s) | 3434 |
| PpsI | GAGTC | 7 cut(s) | 532, 629, 1313, 1840, 2358, 2743, 3455 |
| Ppu21I | YACGTR | 1 cut(s) | 3434 |
| PscI | ACATGT | 1 cut(s) | 3181 |
| PshBI | ATTAAT | 1 cut(s) | 633 |
| PsiI | TTATAA | 1 cut(s) | 729 |
| Psp124BI | GAGCTC | 1 cut(s) | 19 |
| Psp6I | CCWGG | 7 cut(s) | 487, 1662, 1863, 2536, 2848, 2869, 3361 |
| PspCI | CACGTG | 1 cut(s) | 3434 |
| PspEI | GGTNACC | 1 cut(s) | 1468 |
| PspGI | CCWGG | 7 cut(s) | 487, 1662, 1863, 2536, 2848, 2869, 3361 |
| PspN4I | GGNNCC | 7 cut(s) | 287, 796, 1216, 2746, 2868, 2945, 2987 |
| PspOMI | GGGCCC | 1 cut(s) | 2985 |
| PspPI | GGNCC | 5 cut(s) | 1129, 2985, 2986, 3071, 3386 |
| PspXI | VCTCGAGB | 1 cut(s) | 1678 |
| PstI | CTGCAG | 1 cut(s) | 3481 |
| PsuI | RGATCY | 6 cut(s) | 481, 2425, 2470, 2623, 3063, 3280 |
| PsyI | GACNNNGTC | 1 cut(s) | 3011 |
| PvuI | CGATCG | 1 cut(s) | 405 |
| PvuII | CAGCTG | 1 cut(s) | 1303 |
| RgaI | GCGATCGC | 1 cut(s) | 405 |
| RruI | TCGCGA | 1 cut(s) | 238 |
| RsaI | GTAC | 9 cut(s) | 930, 1173, 1602, 1661, 1761, 2259, 2669, 2868, 3180 |
| RsaNI | GTAC | 9 cut(s) | 929, 1172, 1601, 1660, 1760, 2258, 2668, 2867, 3179 |
| RseI | CAYNNNNRTG | 6 cut(s) | 1182, 1655, 1959, 2753, 2823, 3306 |
| SacI | GAGCTC | 1 cut(s) | 19 |
| SapI | GCTCTTC | 1 cut(s) | 1206 |
| SatI | GCNGC | 2 cut(s) | 33, 1891 |
| Sau96I | GGNCC | 5 cut(s) | 1129, 2985, 2986, 3071, 3386 |
| ScaI | AGTACT | 1 cut(s) | 2259 |
| SchI | GAGTC | 7 cut(s) | 533, 630, 1313, 1841, 2359, 2744, 3455 |
| ScrFI | CCNGG | 8 cut(s) | 489, 996, 1664, 1865, 2538, 2850, 2871, 3363 |
| SduI | GDGCHC | 3 cut(s) | 19, 522, 2989 |
| SfaAI | GCGATCGC | 1 cut(s) | 405 |
| SfaNI | GCATC | 9 cut(s) | 966, 1488, 1510, 1588, 1716, 2368, 3492, 3518, 3549 |
| SfcI | CTRYAG | 2 cut(s) | 2268, 3477 |
| Sfr274I | CTCGAG | 1 cut(s) | 1678 |
| SgfI | GCGATCGC | 1 cut(s) | 405 |
| SinI | GGWCC | 3 cut(s) | 1129, 3071, 3386 |
| SlaI | CTCGAG | 1 cut(s) | 1678 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 1182, 1655, 1959, 2753, 2823, 3306 |
| SmlI | CTYRAG | 4 cut(s) | 85, 1678, 2173, 2253 |
| SmoI | CTYRAG | 4 cut(s) | 85, 1678, 2173, 2253 |
| SphI | GCATGC | 1 cut(s) | 1118 |
| SseBI | AGGCCT | 1 cut(s) | 2481 |
| SsiI | CCGC | 5 cut(s) | 138, 1182, 1667, 2433, 3555 |
| SspI | AATATT | 4 cut(s) | 631, 2089, 2663, 3325 |
| SspMI | CTAG | 6 cut(s) | 1020, 1409, 1959, 2133, 2261, 2388 |
| SstI | GAGCTC | 1 cut(s) | 19 |
| StuI | AGGCCT | 1 cut(s) | 2481 |
| StyD4I | CCNGG | 8 cut(s) | 487, 994, 1662, 1863, 2536, 2848, 2869, 3361 |
| StyI | CCWWGG | 3 cut(s) | 1209, 2387, 2739 |
| TaaI | ACNGT | 4 cut(s) | 2567, 2794, 2920, 3383 |
| TaiI | ACGT | 5 cut(s) | 81, 363, 1567, 3111, 3436 |
| TaqI | TCGA | 7 cut(s) | 291, 363, 619, 624, 933, 1679, 2484 |
| TaqII | GACCGA | 1 cut(s) | 3088 |
| TatI | WGTACW | 5 cut(s) | 928, 1600, 1759, 2257, 3178 |
| TscAI | CASTG | 2 cut(s) | 127, 2199 |
| TseFI | GTSAC | 5 cut(s) | 1514, 2595, 2788, 3095, 3355 |
| TseI | GCWGC | 2 cut(s) | 32, 1890 |
| Tsp45I | GTSAC | 5 cut(s) | 1514, 2595, 2788, 3095, 3355 |
| TspGWI | ACGGA | 1 cut(s) | 235 |
| TspRI | CASTG | 2 cut(s) | 127, 2199 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3011 |
| VpaK11BI | GGWCC | 3 cut(s) | 1129, 3071, 3386 |
| VspI | ATTAAT | 1 cut(s) | 633 |
| XapI | RAATTY | 9 cut(s) | 609, 736, 1629, 1784, 1820, 1938, 1990, 2241, 3222 |
| XceI | RCATGY | 5 cut(s) | 1118, 1368, 1654, 3081, 3185 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3131 |
| XhoI | CTCGAG | 1 cut(s) | 1678 |
| XmaJI | CCTAGG | 1 cut(s) | 2387 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1785 |
| XspI | CTAG | 6 cut(s) | 1020, 1409, 1959, 2133, 2261, 2388 |
| ZraI | GACGTC | 1 cut(s) | 361 |
| ZrmI | AGTACT | 1 cut(s) | 2259 |
| Zsp2I | ATGCAT | 4 cut(s) | 454, 1503, 1717, 2383 |