Prupe.2G126400_v2.0.a1

TMV resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000036
Physical Location & Seq
Forward (+)
18366911 .. 18371938
5028 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G126400.1

Sequence Viewer

Length: 3531 bp
ATGGCACTTGTGAGAGCTCAGCAAACCTCCTCTAATTCTCGATATTCTCGTTATCACGTGTTTCTGAGTTTCAGAGGAGAAGACACTCGCAAGAATTTCACTGACCACCTCTGTAGGGCGTTTGTCAACGCAGGATTCCGCACTTTCCGAGACAACGATGAACTTGAGAGAGGAGAAGATATCAAGCCCGAACTGCGGAAAGCAATCAAACAGTCACGAACTTCTGTTATTGTTTTCTCAAAAGACTACGCGTCATCCCCATGGTGCCTTGACGAGCTTTTGATGATCCTTGAACGCAAGAGGATTTCAGCTGACCATGTCATTTTGCCTGTCTTCTACGATGTGGATCCATCCCATGTGAGGAAGCAGACAGGAAGTCTTGCAAAGGCATTTGCTAGGCACCAAAAAACTCAACCGCTTCAGAAGGTGACGGCATGGAGGGAGGCACTTGCAGAGGTTGCTTGTCTTGCAGGCATGGTCTTGCAAAATCAAGCTGATGGGTATGAGTCAAAGTTTATCGAGAAAATAATTAAGGTTATTGGAGACAAACTAAGTCGCACACCCTTAAGTGTTGGCCCCAACATGATTGGAATGCAATCTCGAGTGGAAAATATCAACTTATGGTTGCAGCAAGGATCAACCGATGTTGGCATACTTGTAATTTATGGGATAAGTGGAATAGGGAAGACAACCATAGCAAAGTATGTTTATAATTCAAACTTTCGAAGATTCAAAGGCAGCAGCTTCCTTGAAAACATCAAAGAAATTTCACAGCAACCCAATGGCTTAGTTCAAATACAAACACAACTTCTTTATGATATTTTGAATGGGAGAAAAGTGAAGATACACAGTGTTAGTCAAGGAGTAACTGAGATTGAAGATGCCATAAGTTCTAAACGGGTTCTCCTTGTTCTCGATGATGTGGATCATGAGGACCAATTAGATGCACTACTTCGCATGAAAGATCAATTTTGTCCAGGAAGTAAAATCATCATAACAACTAGGCGTGCAAGATTAAAGACTCATCTAGTTACTGAGGTACATGCAGTTGAATCTTTGGATCAAAACGAATCATTGGAGCTCTTTAGTTGGCACGCTTTTGGCCAGAACCATCCCGTTGAAGATCACATAGAATATTCGAAAAAAATAGTGGATCATTGTGGAGGTCTTCCATTAGCACTTAAAGTTTTAGGTTCATCTTTGTTGGGGGAAAGTATAGATGTATGGAAAAGTGCATTCGAGAAGTTAGAAGCTATTCCAAATGGTGAAATAATAAATAAGCTAAGAGTAAGCTACGACTCTTTGCAAGATGATAATGACCAAAACGTATTCCTCCATATTTCTTGTTTCTTTATTGGCAAGGACAAAGATTACATTGTTAAAATACTAGACGGATGTGAGTTCTTTACAAATGTTGCCATTCAAAATCTCATTGATAGATGTTTGGTGACAATCGATAGTTGTGACAAGGTCCAAATGCATGACTTGATTCGTGGAATGGGAAGAGAAATTGTTCGTCTAGAGTCAAAGGAGCCTTGGAAACGCAGTAGAGTATGGCGCAATAAGGATTCCTTCAAAATCCTGACAGAAAAGAATGGTACAGGAACAATTGAAGGTCTTGTCCTGGACATGCATATGCACCCTACAAACAGTCCCATATACTCAAATGAGAAAGTCTTGGAAACCAATGCATTTGGAAGGATGCGTGAACTAAAACTACTTCATCTTAGTCATGTACAACTTGACGGATGTTATGCAGAATTTTGTACTGAATTAAGATGGCTGTGTTGGGTTAAATTTCCTTTGGATTCTATACCCTCTGATTTTCCTTTGGGGAGCCTAATTGTTCTTGAAATGCAATACAGCAACTTGAGACAAGTCTGTCAAGGAACAAAATGTCTGCCGTTATTGAAGATCCTTGATCTCCGCCATTGTGATAGCCTTACTAATGCTACTGACTTCTCATGTTGCCCCAGTCTGGAGAAATTGATTCTCTTAGATTGTGAAAGCCTGGTTGAGGTCAACGAATCCATTGGAAACCTAGAGAGACTTGTTTACTTGAGTTTGGGGGACTGCAAAAATCTTAAGATGCTTCCTAAGAACATCCCCATGCTGAAATTACTTGAAACACTTATTGTATCTGGTTGCACCAATCTTAATGAGTTATCACTTGAGATGTTGAGCAACATGGAATCTCTGAGAGTGCTTGAGACAGATGGAATTCCGATAGGTGATGAACTCTGGCCAGGAAGAAGTTCACGTATCTTGAGTTCCTTGCCATGCTCTTTAGTATACTTAAGTCTCCAGGATTGCAATCTTTCAGATGATTCCTTCCCTAGGGATTTTAATAATCTATCCTCTTTGCAAAGACTAAATCTGGGGAACAATCCAATTCGTAGCCTACCAAATTGCATCCAAGGTTTAAGGGGGCTGAGTGAACTCTCTTTTTGGGAATGTAGGAGGCTCAAATCCCTTGTGGGGTTACCAAGAGTAGGCAACCTGAATGTGGAATGTTGTGTATTATTGAAGAAAATAGCATATCAATCCGGTCAATTCCGAAAACACGGTACCAAGTGCTTTTACAATGACAACCTAGTTGAATGGGAGAATAACTACAAGCTAGAGCCCATTGGAAGAGTTGATGTAGAAATTATCAACCTTTTGGGCTTGTGCAAATTGGAATCCATGGCACCCATTCGGATTCGAAAACCATACCAGTCACAAATTGATGATGATCGTTGTCCCGTCCAGGGACTGTACGAACGTGGTATATTCAGCACATTTTTTGCTGGGAATGAGGTTCCAGGCCAGTTCAGCCACAAAAGTACAAAGTCATCAATATCTTTTGTTGTGCCTTTACTTCCTAATCACAGAATCGGAGGCTTGAAGGTCTTTGCTGTCTATACAAAACAGGCCAATGATTCTCCTTGGGCTTTACCTGGGCCATTGATTACTAGAGTCAGAAATAAGAGCAAGGGTCTGAAGTGGATCTATGCCCCTTCACACTGCGGCATTCCTGCTGAAGGAGAAGACATGATATGGTTAAGCCATTGGAAGTTGGAGGAGGAGGTTCACTTAGATGGTGGCGATGAAGTGCTTGTTTCCGTAATTATGGAACCTTGGCTTCAGGTAAAGGAGTTCGGCATCCAGCTTTTGCAGCCCCTGCAAGAAGAGAGTCATAATAATATGACGAGTGCCCAACACAAAACCATTGATCCGTATTATGCTGCATGTGCCACGAGTGGAGATTCGGATGAATATAAGCCAGGAGTATACTTGCTCTCGCGCAGAAGTGTTCCAATAAAAGATCCGATTTGGTTCAATAAGATCCTTGGGGACTCTGATGAAGAAGACAAAGAAGAAGAGCAACAGGATGGTCATACAATTGCAGCAGCCAAGACCGACGGCAATATTAACTCCAGAGGCCTCCTCTGTGGCTGGAAGGTGCTCATCACCGCCGTTTGCTTCTTTCTCACGCTTCTCTTATCACTCCTCTTCTTCACTTTCTCACAAAAAGAAGGGATAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

1177

Amino Acids

133.23

Weight (kDa)

6.28

Isoelectric Point (pI)

45.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57630 AT1G72930 AT5G38344
fragaria_vesca FvH4_1g27020 FvH4_2g00931 FvH4_2g17330 FvH4_2g17330 FvH4_2g17340 FvH4_2g17350 FvH4_2g20690 FvH4_5g15301 FvH4_5g34194 FvH4_5g38530 FvH4_5g38740 FvH4_5g38740 FvH4_5g38740 FvH4_6g03800 FvH4_7g09791 FvH4_7g09800 FvH4_7g09800 FvH4_7g10510 FvH4_7g10520 FvH4_7g10520 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750
malus_domestica MD02G1217100.v1.1 MD02G1217200.v1.1 MD02G1217400.v1.1 MD02G1217600.v1.1 MD02G1264800.v1.1 MD02G1264900.v1.1 MD02G1302100.v1.1 MD04G1010700.v1.1 MD05G1006800.v1.1 MD05G1140100.v1.1 MD05G1140200.v1.1 MD05G1152200.v1.1 MD07G1073500.v1.1 MD07G1101700.v1.1 MD07G1102200.v1.1 MD07G1103200.v1.1 MD07G1112300.v1.1 MD08G1018200.v1.1 MD08G1018400.v1.1 MD08G1018800.v1.1 MD08G1019000.v1.1 MD08G1019100.v1.1 MD08G1019200.v1.1 MD08G1019300.v1.1 MD08G1019400.v1.1 MD08G1019600.v1.1 MD08G1019900.v1.1 MD08G1020000.v1.1 MD08G1020200.v1.1 MD08G1020500.v1.1 MD08G1020700.v1.1 MD08G1020800.v1.1 MD08G1040700.v1.1 MD11G1112400.v1.1 MD12G1068600.v1.1 MD12G1193200.v1.1 MD13G1050600.v1.1 MD15G1374900.v1.1 MD15G1375100.v1.1 MD15G1416500.v1.1 MD17G1072500.v1.1 MD17G1274200.v1.1 MD17G1274900.v1.1
prunus_persica Prupe.2G121000_v2.0.a1 Prupe.2G121000_v2.0.a1 Prupe.2G125800_v2.0.a1 Prupe.2G126000_v2.0.a1 Prupe.2G126100_v2.0.a1 Prupe.2G126200_v2.0.a1 Prupe.2G126300_v2.0.a1 Prupe.2G126400_v2.0.a1 Prupe.2G126500_v2.0.a1 Prupe.2G126600_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126800_v2.0.a1 Prupe.2G126900_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G135500_v2.0.a1 Prupe.2G135600_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.3G009800_v2.0.a1 Prupe.3G010200_v2.0.a1 Prupe.3G131000_v2.0.a1 Prupe.4G260800_v2.0.a1 Prupe.4G260900_v2.0.a1 Prupe.6G083100_v2.0.a1 Prupe.6G083200_v2.0.a1 Prupe.6G083400_v2.0.a1 Prupe.6G132100_v2.0.a1 Prupe.8G184900_v2.0.a1 Prupe.8G185200_v2.0.a1 Prupe.8G185300_v2.0.a1
pyrus_communis pycom02g17870 pycom02g17880 pycom02g19520 pycom02g22610 pycom02g22630 pycom02g22680 pycom05g13540 pycom05g14680 pycom07g04880 pycom07g04890 pycom07g05690 pycom07g05710 pycom07g05720 pycom07g05750 pycom07g05780 pycom07g06300 pycom07g08320 pycom07g08330 pycom07g08350 pycom07g08360 pycom07g08370 pycom07g08410 pycom07g08420 pycom07g08430 pycom07g08440 pycom07g08470 pycom07g08480 pycom07g08520 pycom07g08550 pycom07g08560 pycom07g08640 pycom07g08660 pycom07g08670 pycom07g08680 pycom07g08690 pycom07g08720 pycom07g08730 pycom07g08790 pycom07g08800 pycom07g08810 pycom07g08860 pycom07g08890 pycom07g09720 pycom08g01590 pycom08g01600 pycom08g01620 pycom08g01630 pycom08g01640 pycom10g12630 pycom15g16490 pycom17g07200 pycom17g07210 pycom17g07220 pycom17g11730 pycom17g11740 pycom17g27340 pycom17g27380
rosa_chinensis RchiOBHm_Chr1g0342571 RchiOBHm_Chr1g0346231 RchiOBHm_Chr1g0346831 RchiOBHm_Chr1g0346891 RchiOBHm_Chr1g0348311 RchiOBHm_Chr1g0348321 RchiOBHm_Chr1g0348331 RchiOBHm_Chr1g0348361 RchiOBHm_Chr1g0348371 RchiOBHm_Chr1g0348381 RchiOBHm_Chr1g0348401 RchiOBHm_Chr1g0348411 RchiOBHm_Chr1g0348421 RchiOBHm_Chr1g0348431 RchiOBHm_Chr2g0130881 RchiOBHm_Chr3g0487331 RchiOBHm_Chr5g0060371 RchiOBHm_Chr6g0246491 RchiOBHm_Chr6g0246871 RchiOBHm_Chr6g0250311 RchiOBHm_Chr6g0250781 RchiOBHm_Chr6g0251431 RchiOBHm_Chr6g0281871 RchiOBHm_Chr6g0281881 RchiOBHm_Chr6g0281931 RchiOBHm_Chr6g0281941 RchiOBHm_Chr6g0281951 RchiOBHm_Chr6g0281971 RchiOBHm_Chr6g0281981 RchiOBHm_Chr7g0240541 RchiOBHm_Chr7g0240631 RchiOBHm_Chr7g0240671
rosa_laevigata RLG00000000627 RLG00000000631 RLG00000000641 RLG00000000645 RLG00000000652 RLG00000000662 RLG00000000663 RLG00000000667 RLG00000000670 RLG00000000702 RLG00000001216 RLG00000001219 RLG00000007678 RLG00000012923 RLG00000012996 RLG00000013243 RLG00000017513 RLG00000017514 RLG00000020936 RLG00000022755 RLG00000023013 RLG00000028646 RLG00000028654 RLG00000028662 RLG00000028665 RLG00000028667 RLG00000028711 RLG00000028714 RLG00000028716 RLG00000028770 RLG00000028771 RLG00000028773 RLG00000028778 RLG00000028798 RLG00000028809 RLG00000028813 RLG00000029334 RLG00000030003 RLG00000033910 RLG00000034358 RLG00000035430
rosa_multiflora Rmu_co8031134.1_g000001 Rmu_co8092796.1_g000001 Rmu_co8130156.1_g000001 Rmu_co8325323.1_g000001 Rmu_co8424083.1_g000002 Rmu_sc0000008.1_g000003 Rmu_sc0000008.1_g000011 Rmu_sc0000008.1_g000015 Rmu_sc0000008.1_g000020 Rmu_sc0000091.1_g000015 Rmu_sc0000091.1_g000018 Rmu_sc0000091.1_g000029 Rmu_sc0000091.1_g000031 Rmu_sc0000391.1_g000004 Rmu_sc0001070.1_g000030 Rmu_sc0001293.1_g000016 Rmu_sc0001674.1_g000006 Rmu_sc0001731.1_g000002 Rmu_sc0001731.1_g000003 Rmu_sc0001731.1_g000005 Rmu_sc0001911.1_g000029 Rmu_sc0001913.1_g000038 Rmu_sc0001955.1_g000025 Rmu_sc0001992.1_g000022 Rmu_sc0001992.1_g000028 Rmu_sc0001992.1_g000031 Rmu_sc0002517.1_g000013 Rmu_sc0002517.1_g000017 Rmu_sc0002551.1_g000022 Rmu_sc0002551.1_g000029 Rmu_sc0002551.1_g000038 Rmu_sc0002705.1_g000015 Rmu_sc0002705.1_g000016 Rmu_sc0002882.1_g000055 Rmu_sc0003232.1_g000027 Rmu_sc0003363.1_g000037 Rmu_sc0003600.1_g000054 Rmu_sc0003918.1_g000011 Rmu_sc0004395.1_g000011 Rmu_sc0005071.1_g000004 Rmu_sc0005255.1_g000018 Rmu_sc0005327.1_g000004 Rmu_sc0005597.1_g000007 Rmu_sc0007060.1_g000007 Rmu_sc0007310.1_g000003 Rmu_sc0007383.1_g000014 Rmu_sc0007799.1_g000003 Rmu_sc0008477.1_g000016 Rmu_sc0010151.1_g000009 Rmu_sc0011217.1_g000005 Rmu_sc0016269.1_g000006 Rmu_sc0021495.1_g000001 Rmu_sc0027364.1_g000001 Rmu_sc0029432.1_g000001 Rmu_sc0041386.1_g000001 Rmu_ssc0000126.1_g000023 Rmu_ssc0000126.1_g000027
rosa_roxburghii Rroxscaffold_1G00006130 Rroxscaffold_1G00023320 Rroxscaffold_1G00038770 Rroxscaffold_2G00119800 Rroxscaffold_2G00121860 Rroxscaffold_3G00219780 Rroxscaffold_3G00219890 Rroxscaffold_4G00306740 Rroxscaffold_4G00306820 Rroxscaffold_4G00307000 Rroxscaffold_4G00307010 Rroxscaffold_4G00307020 Rroxscaffold_4G00308030 Rroxscaffold_4G00308070 Rroxscaffold_4G00308450 Rroxscaffold_4G00308460 Rroxscaffold_4G00315320 Rroxscaffold_5G00352470 Rroxscaffold_5G00371420 Rroxscaffold_6G00392300 Rroxscaffold_6G00394870 Rroxscaffold_6G00394890 Rroxscaffold_7G00186700 Rroxscaffold_7G00194980 Rroxscaffold_7G00216840
rosa_rugosa Rorug01G0076100 Rorug01G0128100 Rorug01G0149000.1 Rorug01G0149500.1 Rorug01G0180000 Rorug01G0180100 Rorug01G0182900 Rorug01G0184000 Rorug01G0184100 Rorug01G0184300 Rorug01G0184600 Rorug01G0184700 Rorug01G0184700 Rorug01G0184900 Rorug01G0185000 Rorug01G0185100 Rorug01G0189300 Rorug01G0194100 Rorug01G0194100 Rorug01G0194200 Rorug01G0194400 Rorug01G0194400 Rorug01G0194500 Rorug02G0090400 Rorug02G0090400 Rorug03G0233000 Rorug03G0233100 Rorug05G0178600 Rorug05G0178700 Rorug05G0579200 Rorug06G0144100 Rorug06G0144300 Rorug06G0144300 Rorug06G0179300 Rorug06G0208800 Rorug07G0323500 Rorug07G0337000
rosa_samantha Rh1AG046100 Rh1AG201400 Rh1AG201800 Rh1AG202100 Rh1AG202600 Rh1AG211500 Rh1AG211800 Rh1AG212200 Rh1AG212500 Rh1AG212600 Rh1AG214200 Rh1BG168000 Rh1BG168300 Rh1BG168500 Rh1BG177900 Rh1BG178200 Rh1BG178300 Rh1BG178800 Rh1BG178900 Rh1CG080900 Rh1CG183300 Rh1CG186300 Rh1CG186700 Rh1CG187000 Rh1CG187300 Rh1CG193400 Rh1CG195800 Rh1CG196000 Rh1CG196100 Rh1CG196400 Rh1CG196500 Rh1CG196800 Rh1CG198800 Rh1CG442600 Rh1DG086200 Rh1DG155400 Rh1DG156200 Rh1DG194000 Rh1DG194300 Rh1DG194900 Rh1DG197000 Rh1DG198800 Rh1DG199000 Rh1DG199200 Rh1DG202000 Rh1DG203900 Rh1DG207600 Rh1DG207900 Rh1DG208000 Rh1DG208500 Rh1DG208600 Rh1DG208700 Rh3CG339100 Rh5AG106500 Rh5AG264800 Rh5AG265300 Rh5CG302800 Rh5DG277900 Rh6AG257600 Rh6AG257700 Rh6BG260500 Rh6BG260700 Rh6CG259600 Rh6CG259700 Rh6DG252100 Rh7DG126900
rosa_wichuraiana Rw0G005780 Rw0G007540 Rw0G007550 Rw0G007560 Rw0G009390 Rw1G016900 Rw1G016930 Rw1G016940 Rw1G016970 Rw1G017860 Rw1G017890 Rw1G017900 Rw1G017910 Rw1G017920 Rw1G017960 Rw1G017970 Rw1G017980 Rw1G018150 Rw4G000830 Rw5G009290 Rw5G018950 Rw5G024850 Rw5G024870 Rw5G040460 Rw6G022290 Rw7G041020 Rw7G041200 Rw7G041360 Rw7G041450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 711
AasI GACNNNNNNGTC 1 cut(s) 1881
Acc65I GGTACC 1 cut(s) 2567
AccB1I GGYRCC 4 cut(s) 264, 399, 2567, 2689
AccI GTMKAC 2 cut(s) 2292, 3273
AccII CGCG 2 cut(s) 251, 3286
AciI CCGC 6 cut(s) 139, 196, 416, 1927, 3009, 3456
AcoI YGGCCR 2 cut(s) 1102, 2243
AcsI RAATTY 5 cut(s) 94, 765, 1760, 1796, 2220
AcuI CTGAAG 4 cut(s) 404, 3002, 3042, 3110
AcvI CACGTG 1 cut(s) 58
AfaI GTAC 7 cut(s) 1041, 1600, 1737, 1768, 2569, 2759, 2827
AflII CTTAAG 3 cut(s) 565, 2084, 2296
AflIII ACRYGT 2 cut(s) 57, 249
AhdI GACNNNNNGTC 2 cut(s) 250, 375
AjnI CCWGG 9 cut(s) 976, 1623, 2010, 2245, 2304, 2748, 2803, 2938, 3265
Alw21I GWGCWC 3 cut(s) 19, 1083, 3450
Alw26I GTCTC 6 cut(s) 144, 537, 1867, 2041, 2204, 2306
AlwNI CAGNNNCTG 2 cut(s) 2755, 3163
Ama87I CYCGRG 1 cut(s) 600
AoxI GGCC 7 cut(s) 574, 1102, 2243, 2806, 2913, 2942, 3424
ApeKI GCWGC 7 cut(s) 628, 738, 741, 3157, 3227, 3389, 3392
ApoI RAATTY 5 cut(s) 94, 765, 1760, 1796, 2220
Asp700I GAANNNNTTC 3 cut(s) 1254, 1512, 2254
Asp718I GGTACC 1 cut(s) 2567
AspA2I CCTAGG 1 cut(s) 2336
AspLEI GCGC 2 cut(s) 1560, 3288
AspS9I GGNCC 4 cut(s) 575, 934, 1471, 2942
AsuHPI GGTGA 5 cut(s) 439, 1277, 1459, 2243, 3445
AsuII TTCGAA 3 cut(s) 724, 1139, 2704
AvaI CYCGRG 1 cut(s) 600
AvaII GGWCC 2 cut(s) 934, 1471
AvrII CCTAGG 1 cut(s) 2336
BaeGI GKGCMC 1 cut(s) 3199
BalI TGGCCA 2 cut(s) 1104, 2245
BamHI GGATCC 1 cut(s) 346
BanI GGYRCC 4 cut(s) 264, 399, 2567, 2689
BanII GRGCYC 3 cut(s) 19, 1083, 2628
BauI CACGAG 1 cut(s) 3238
BbrPI CACGTG 1 cut(s) 58
BbsI GAAGAC 6 cut(s) 87, 325, 692, 1160, 3036, 3357
Bbv12I GWGCWC 3 cut(s) 19, 1083, 3450
BbvI GCAGC 7 cut(s) 640, 750, 753, 3169, 3214, 3401, 3404
BccI CCATC 7 cut(s) 358, 491, 1119, 1773, 2210, 3074, 3368
BceAI ACGGC 4 cut(s) 447, 1888, 3421, 3443
BciT130I CCWGG 9 cut(s) 978, 1625, 2012, 2247, 2306, 2750, 2805, 2940, 3267
BcoDI GTCTC 6 cut(s) 144, 537, 1867, 2041, 2204, 2306
BfmI CTRYAG 1 cut(s) 112
BfrI CTTAAG 3 cut(s) 565, 2084, 2296
BisI GCNGC 8 cut(s) 629, 739, 742, 3010, 3158, 3228, 3390, 3393
BlnI CCTAGG 1 cut(s) 2336
BlpI GCTNAGC 1 cut(s) 18
BlsI GCNGC 8 cut(s) 630, 740, 743, 3011, 3159, 3229, 3391, 3394
Bme1390I CCNGG 9 cut(s) 978, 1625, 2012, 2247, 2306, 2750, 2805, 2940, 3267
Bme18I GGWCC 2 cut(s) 934, 1471
BmeRI GACNNNNNGTC 2 cut(s) 250, 375
BmeT110I CYCGRG 1 cut(s) 600
BmgT120I GGNCC 4 cut(s) 575, 934, 1471, 2942
BmrFI CCNGG 9 cut(s) 978, 1625, 2012, 2247, 2306, 2750, 2805, 2940, 3267
BmrI ACTGGG 1 cut(s) 1968
BmsI GCATC 6 cut(s) 871, 934, 1692, 2079, 2421, 3153
BmuI ACTGGG 1 cut(s) 1968
BpiI GAAGAC 6 cut(s) 87, 325, 692, 1160, 3036, 3357
BplI GAGNNNNNCTC 2 cut(s) 3414, 3446
BpmI CTGGAG 3 cut(s) 2000, 2288, 3403
Bpu1102I GCTNAGC 1 cut(s) 18
Bpu14I TTCGAA 3 cut(s) 724, 1139, 2704
BpuEI CTTGAG 6 cut(s) 185, 1891, 2080, 2192, 2228, 2287
Bsa29I ATCGAT 1 cut(s) 1455
BsaAI YACGTR 2 cut(s) 58, 2261
BsaBI GATNNNNATC 4 cut(s) 345, 924, 2313, 2733
BsaWI WCCGGW 1 cut(s) 2546
BsaXI ACNNNNNCTCC 2 cut(s) 888, 918
Bse1I ACTGG 3 cut(s) 1974, 2716, 2809
Bse8I GATNNNNATC 4 cut(s) 345, 924, 2313, 2733
BseBI CCWGG 9 cut(s) 978, 1625, 2012, 2247, 2306, 2750, 2805, 2940, 3267
BseCI ATCGAT 1 cut(s) 1455
BseJI GATNNNNATC 4 cut(s) 345, 924, 2313, 2733
BseMII CTCAG 6 cut(s) 32, 56, 861, 1026, 2189, 2423
BseNI ACTGG 3 cut(s) 1974, 2716, 2809
BseRI GAGGAG 7 cut(s) 19, 90, 186, 3077, 3080, 3419, 3482
BseSI GKGCMC 1 cut(s) 3199
BseXI GCAGC 7 cut(s) 640, 750, 753, 3169, 3214, 3401, 3404
BseYI CCCAGC 1 cut(s) 2789
Bsh1236I CGCG 2 cut(s) 251, 3286
BshFI GGCC 7 cut(s) 576, 1104, 2245, 2808, 2915, 2944, 3426
BshNI GGYRCC 4 cut(s) 264, 399, 2567, 2689
BshVI ATCGAT 1 cut(s) 1455
BsiHKAI GWGCWC 3 cut(s) 19, 1083, 3450
BsiHKCI CYCGRG 1 cut(s) 600
BsiSI CCGG 1 cut(s) 2547
BslFI GGGAC 5 cut(s) 1638, 2084, 2727, 2766, 3350
BsmAI GTCTC 6 cut(s) 144, 537, 1867, 2041, 2204, 2306
BsmFI GGGAC 5 cut(s) 1638, 2084, 2727, 2766, 3350
BsmI GAATGC 3 cut(s) 597, 1235, 3012
BsnI GGCC 7 cut(s) 576, 1104, 2245, 2808, 2915, 2944, 3426
BsoBI CYCGRG 1 cut(s) 600
Bsp119I TTCGAA 3 cut(s) 724, 1139, 2704
Bsp1286I GDGCHC 5 cut(s) 19, 1083, 2628, 3199, 3450
Bsp1407I TGTACA 1 cut(s) 1735
Bsp1720I GCTNAGC 1 cut(s) 18
Bsp19I CCATGG 2 cut(s) 260, 2685
BspACI CCGC 6 cut(s) 139, 196, 416, 1927, 3009, 3456
BspANI GGCC 7 cut(s) 576, 1104, 2245, 2808, 2915, 2944, 3426
BspCNI CTCAG 6 cut(s) 31, 57, 862, 1027, 2190, 2424
BspDI ATCGAT 1 cut(s) 1455
BspFNI CGCG 2 cut(s) 251, 3286
BspHI TCATGA 1 cut(s) 928
BspQI GCTCTTC 1 cut(s) 3357
BspT104I TTCGAA 3 cut(s) 724, 1139, 2704
BspT107I GGYRCC 4 cut(s) 264, 399, 2567, 2689
BspTI CTTAAG 3 cut(s) 565, 2084, 2296
BsrGI TGTACA 1 cut(s) 1735
BsrI ACTGG 3 cut(s) 1974, 2716, 2809
BssNAI GTATAC 2 cut(s) 2293, 3274
BssSI CACGAG 1 cut(s) 3238
BssT1I CCWWGG 8 cut(s) 260, 1535, 2336, 2416, 2685, 2927, 3119, 3331
Bst1107I GTATAC 2 cut(s) 2293, 3274
Bst2BI CACGAG 1 cut(s) 3238
Bst2UI CCWGG 9 cut(s) 978, 1625, 2012, 2247, 2306, 2750, 2805, 2940, 3267
Bst4CI ACNGT 5 cut(s) 213, 851, 1652, 2567, 2757
Bst6I CTCTTC 5 cut(s) 1498, 2629, 3165, 3357, 3500
BstAFI CTTAAG 3 cut(s) 565, 2084, 2296
BstAPI GCANNNNNTGC 2 cut(s) 458, 3163
BstAUI TGTACA 1 cut(s) 1735
BstBAI YACGTR 2 cut(s) 58, 2261
BstBI TTCGAA 3 cut(s) 724, 1139, 2704
BstC8I GCNNGC 3 cut(s) 472, 1008, 1095
BstDSI CCRYGG 2 cut(s) 260, 2685
BstEII GGTNACC 1 cut(s) 2481
BstENI CCTNNNNNAGG 3 cut(s) 2015, 2335, 3021
BstFNI CGCG 2 cut(s) 251, 3286
BstHHI GCGC 2 cut(s) 1560, 3288
BstMAI GTCTC 6 cut(s) 144, 537, 1867, 2041, 2204, 2306
BstMWI GCNNNNNNNGC 7 cut(s) 193, 458, 467, 2814, 3157, 3163, 3233
BstNI CCWGG 9 cut(s) 978, 1625, 2012, 2247, 2306, 2750, 2805, 2940, 3267
BstNSI RCATGY 3 cut(s) 1046, 1633, 3234
BstPI GGTNACC 1 cut(s) 2481
BstSCI CCNGG 9 cut(s) 976, 1623, 2010, 2245, 2304, 2748, 2803, 2938, 3265
BstSFI CTRYAG 1 cut(s) 112
BstSLI GKGCMC 1 cut(s) 3199
BstUI CGCG 2 cut(s) 251, 3286
BstV1I GCAGC 7 cut(s) 640, 750, 753, 3169, 3214, 3401, 3404
BstV2I GAAGAC 6 cut(s) 87, 325, 692, 1160, 3036, 3357
BstX2I RGATCY 5 cut(s) 346, 1914, 2988, 3307, 3327
BstYI RGATCY 5 cut(s) 346, 1914, 2988, 3307, 3327
BstZ17I GTATAC 2 cut(s) 2293, 3274
Bsu15I ATCGAT 1 cut(s) 1455
BsuRI GGCC 7 cut(s) 576, 1104, 2245, 2808, 2915, 2944, 3426
BsuTUI ATCGAT 1 cut(s) 1455
BtgI CCRYGG 2 cut(s) 260, 2685
BtgZI GCGATG 1 cut(s) 3102
BtsI GCAGTG 1 cut(s) 3004
BtsIMutI CAGTG 3 cut(s) 99, 856, 3004
Cac8I GCNNGC 3 cut(s) 472, 1008, 1095
CaiI CAGNNNCTG 2 cut(s) 2755, 3163
CciI TCATGA 1 cut(s) 928
CfoI GCGC 2 cut(s) 1560, 3288
Cfr13I GGNCC 4 cut(s) 575, 934, 1471, 2942
ClaI ATCGAT 1 cut(s) 1455
CseI GACGC 1 cut(s) 240
Csp6I GTAC 7 cut(s) 1040, 1599, 1736, 1767, 2568, 2758, 2826
CviQI GTAC 7 cut(s) 1040, 1599, 1736, 1767, 2568, 2758, 2826
DrdI GACNNNNNNGTC 1 cut(s) 1881
DriI GACNNNNNGTC 2 cut(s) 250, 375
DseDI GACNNNNNNGTC 1 cut(s) 1881
EaeI YGGCCR 2 cut(s) 1102, 2243
Eam1104I CTCTTC 5 cut(s) 1498, 2629, 3165, 3357, 3500
Eam1105I GACNNNNNGTC 2 cut(s) 250, 375
EarI CTCTTC 5 cut(s) 1498, 2629, 3165, 3357, 3500
EciI GGCGGA 1 cut(s) 1916
Ecl136II GAGCTC 2 cut(s) 17, 1081
Eco130I CCWWGG 8 cut(s) 260, 1535, 2336, 2416, 2685, 2927, 3119, 3331
Eco147I AGGCCT 1 cut(s) 3426
Eco24I GRGCYC 3 cut(s) 19, 1083, 2628
Eco32I GATATC 1 cut(s) 181
Eco47I GGWCC 2 cut(s) 934, 1471
Eco53kI GAGCTC 2 cut(s) 17, 1081
Eco57I CTGAAG 4 cut(s) 404, 3002, 3042, 3110
Eco72I CACGTG 1 cut(s) 58
Eco88I CYCGRG 1 cut(s) 600
Eco91I GGTNACC 1 cut(s) 2481
EcoICRI GAGCTC 2 cut(s) 17, 1081
EcoNI CCTNNNNNAGG 3 cut(s) 2015, 2335, 3021
EcoO65I GGTNACC 1 cut(s) 2481
EcoRI GAATTC 1 cut(s) 2220
EcoRII CCWGG 9 cut(s) 976, 1623, 2010, 2245, 2304, 2748, 2803, 2938, 3265
EcoRV GATATC 1 cut(s) 181
EcoT14I CCWWGG 8 cut(s) 260, 1535, 2336, 2416, 2685, 2927, 3119, 3331
EcoT22I ATGCAT 3 cut(s) 1482, 1635, 1693
EcoT38I GRGCYC 3 cut(s) 19, 1083, 2628
ErhI CCWWGG 8 cut(s) 260, 1535, 2336, 2416, 2685, 2927, 3119, 3331
FalI AAGNNNNNCTT 2 cut(s) 1556, 1588
FaqI GGGAC 5 cut(s) 1638, 2084, 2727, 2766, 3350
FauNDI CATATG 1 cut(s) 1635
FblI GTMKAC 2 cut(s) 2292, 3273
Fnu4HI GCNGC 8 cut(s) 629, 739, 742, 3010, 3158, 3228, 3390, 3393
FriOI GRGCYC 3 cut(s) 19, 1083, 2628
Fsp4HI GCNGC 8 cut(s) 629, 739, 742, 3010, 3158, 3228, 3390, 3393
GlaI GCGC 2 cut(s) 1559, 3287
GluI GCNGC 8 cut(s) 629, 739, 742, 3010, 3158, 3228, 3390, 3393
GsaI CCCAGC 1 cut(s) 2793
GsuI CTGGAG 3 cut(s) 2000, 2288, 3403
HaeIII GGCC 7 cut(s) 576, 1104, 2245, 2808, 2915, 2944, 3426
HapII CCGG 1 cut(s) 2547
HgaI GACGC 1 cut(s) 240
HhaI GCGC 2 cut(s) 1560, 3288
Hin6I GCGC 2 cut(s) 1558, 3286
HinP1I GCGC 2 cut(s) 1558, 3286
HincII GTYRAC 2 cut(s) 127, 2023
HindII GTYRAC 2 cut(s) 127, 2023
HpaII CCGG 1 cut(s) 2547
HphI GGTGA 5 cut(s) 439, 1277, 1459, 2243, 3445
Hpy166II GTNNAC 9 cut(s) 127, 1709, 2023, 2056, 2258, 2293, 2438, 3073, 3274
Hpy8I GTNNAC 9 cut(s) 127, 1709, 2023, 2056, 2258, 2293, 2438, 3073, 3274
Hpy99I CGWCG 1 cut(s) 3407
HpyCH4III ACNGT 5 cut(s) 213, 851, 1652, 2567, 2757
HpyCH4IV ACGT 4 cut(s) 57, 1326, 2260, 2764
HpyF10VI GCNNNNNNNGC 7 cut(s) 193, 458, 467, 2814, 3157, 3163, 3233
HpySE526I ACGT 4 cut(s) 57, 1326, 2260, 2764
HspAI GCGC 2 cut(s) 1558, 3286
KpnI GGTACC 1 cut(s) 2571
LguI GCTCTTC 1 cut(s) 3357
LmnI GCTCC 3 cut(s) 1078, 1531, 1836
Lsp1109I GCAGC 7 cut(s) 640, 750, 753, 3169, 3214, 3401, 3404
LweI GCATC 6 cut(s) 871, 934, 1692, 2079, 2421, 3153
MaeII ACGT 4 cut(s) 57, 1326, 2260, 2764
MaeIII GTNAC 8 cut(s) 213, 427, 865, 1030, 1447, 1463, 2481, 2718
MfeI CAATTG 2 cut(s) 1608, 3384
MflI RGATCY 5 cut(s) 346, 1914, 2988, 3307, 3327
MhlI GDGCHC 5 cut(s) 19, 1083, 2628, 3199, 3450
MlsI TGGCCA 2 cut(s) 1104, 2245
MluI ACGCGT 1 cut(s) 249
MluNI TGGCCA 2 cut(s) 1104, 2245
MlyI GAGTC 7 cut(s) 515, 1015, 1292, 1532, 2967, 3184, 3332
MmeI TCCRAC 1 cut(s) 3039
Mox20I TGGCCA 2 cut(s) 1104, 2245
Mph1103I ATGCAT 3 cut(s) 1482, 1635, 1693
MroXI GAANNNNTTC 3 cut(s) 1254, 1512, 2254
MscI TGGCCA 2 cut(s) 1104, 2245
MslI CAYNNNNRTG 4 cut(s) 259, 1634, 2108, 3078
Msp20I TGGCCA 2 cut(s) 1104, 2245
MspA1I CMGCKG 1 cut(s) 311
MspCI CTTAAG 3 cut(s) 565, 2084, 2296
MspI CCGG 1 cut(s) 2547
MspR9I CCNGG 9 cut(s) 978, 1625, 2012, 2247, 2306, 2750, 2805, 2940, 3267
MunI CAATTG 2 cut(s) 1608, 3384
Mva1269I GAATGC 3 cut(s) 597, 1235, 3012
MvaI CCWGG 9 cut(s) 978, 1625, 2012, 2247, 2306, 2750, 2805, 2940, 3267
MvnI CGCG 2 cut(s) 251, 3286
MwoI GCNNNNNNNGC 7 cut(s) 193, 458, 467, 2814, 3157, 3163, 3233
NcoI CCATGG 2 cut(s) 260, 2685
NdeI CATATG 1 cut(s) 1635
NmuCI GTSAC 5 cut(s) 213, 427, 1447, 1463, 2718
NsiI ATGCAT 3 cut(s) 1482, 1635, 1693
NspI RCATGY 3 cut(s) 1046, 1633, 3234
NspV TTCGAA 3 cut(s) 724, 1139, 2704
PaeR7I CTCGAG 1 cut(s) 600
PagI TCATGA 1 cut(s) 928
PceI AGGCCT 1 cut(s) 3426
PciSI GCTCTTC 1 cut(s) 3357
PcsI WCGNNNNNNNCGW 1 cut(s) 46
PctI GAATGC 3 cut(s) 597, 1235, 3012
PdmI GAANNNNTTC 3 cut(s) 1254, 1512, 2254
PflFI GACNNNGTC 2 cut(s) 317, 1469
PfoI TCCNGGA 3 cut(s) 976, 1623, 2304
PkrI GCNGC 8 cut(s) 630, 740, 743, 3011, 3159, 3229, 3391, 3394
PleI GAGTC 7 cut(s) 514, 1015, 1292, 1531, 2966, 3183, 3332
PmaCI CACGTG 1 cut(s) 58
PmlI CACGTG 1 cut(s) 58
PpsI GAGTC 7 cut(s) 514, 1015, 1292, 1531, 2966, 3183, 3332
Ppu21I YACGTR 2 cut(s) 58, 2261
PsiI TTATAA 1 cut(s) 711
Psp124BI GAGCTC 2 cut(s) 19, 1083
Psp6I CCWGG 9 cut(s) 976, 1623, 2010, 2245, 2304, 2748, 2803, 2938, 3265
PspCI CACGTG 1 cut(s) 58
PspEI GGTNACC 1 cut(s) 2481
PspFI CCCAGC 1 cut(s) 2789
PspGI CCWGG 9 cut(s) 976, 1623, 2010, 2245, 2304, 2748, 2803, 2938, 3265
PspPI GGNCC 4 cut(s) 575, 934, 1471, 2942
PsrI GAACNNNNNNTAC 4 cut(s) 1701, 1733, 2254, 2286
PstNI CAGNNNCTG 2 cut(s) 2755, 3163
PsuI RGATCY 5 cut(s) 346, 1914, 2988, 3307, 3327
PsyI GACNNNGTC 2 cut(s) 317, 1469
PvuII CAGCTG 1 cut(s) 311
RsaI GTAC 7 cut(s) 1041, 1600, 1737, 1768, 2569, 2759, 2827
RsaNI GTAC 7 cut(s) 1040, 1599, 1736, 1767, 2568, 2758, 2826
RseI CAYNNNNRTG 4 cut(s) 259, 1634, 2108, 3078
SacI GAGCTC 2 cut(s) 19, 1083
SapI GCTCTTC 1 cut(s) 3357
SatI GCNGC 8 cut(s) 629, 739, 742, 3010, 3158, 3228, 3390, 3393
Sau96I GGNCC 4 cut(s) 575, 934, 1471, 2942
SchI GAGTC 7 cut(s) 515, 1015, 1292, 1532, 2967, 3184, 3332
ScrFI CCNGG 9 cut(s) 978, 1625, 2012, 2247, 2306, 2750, 2805, 2940, 3267
SduI GDGCHC 5 cut(s) 19, 1083, 2628, 3199, 3450
SfaNI GCATC 6 cut(s) 871, 934, 1692, 2079, 2421, 3153
SfcI CTRYAG 1 cut(s) 112
Sfr274I CTCGAG 1 cut(s) 600
SfuI TTCGAA 3 cut(s) 724, 1139, 2704
SinI GGWCC 2 cut(s) 934, 1471
SlaI CTCGAG 1 cut(s) 600
SmiMI CAYNNNNRTG 4 cut(s) 259, 1634, 2108, 3078
SseBI AGGCCT 1 cut(s) 3426
SsiI CCGC 6 cut(s) 139, 196, 416, 1927, 3009, 3456
SspI AATATT 2 cut(s) 1136, 3412
SstI GAGCTC 2 cut(s) 19, 1083
StuI AGGCCT 1 cut(s) 3426
StyD4I CCNGG 9 cut(s) 976, 1623, 2010, 2245, 2304, 2748, 2803, 2938, 3265
StyI CCWWGG 8 cut(s) 260, 1535, 2336, 2416, 2685, 2927, 3119, 3331
TaaI ACNGT 5 cut(s) 213, 851, 1652, 2567, 2757
TaiI ACGT 4 cut(s) 60, 1329, 2263, 2767
TaqI TCGA 9 cut(s) 40, 519, 601, 724, 915, 1139, 1239, 1455, 2704
TaqII GACCGA 1 cut(s) 3416
TatI WGTACW 3 cut(s) 1735, 1766, 2825
TauI GCSGC 1 cut(s) 3012
TscAI CASTG 3 cut(s) 106, 856, 3011
TseFI GTSAC 5 cut(s) 213, 427, 1447, 1463, 2718
TseI GCWGC 7 cut(s) 628, 738, 741, 3157, 3227, 3389, 3392
Tsp45I GTSAC 5 cut(s) 213, 427, 1447, 1463, 2718
TspDTI ATGAA 8 cut(s) 174, 974, 1185, 1712, 2250, 3105, 3270, 3360
TspGWI ACGGA 4 cut(s) 1407, 1761, 3094, 3207
TspRI CASTG 3 cut(s) 106, 856, 3011
Tth111I GACNNNGTC 2 cut(s) 317, 1469
Vha464I CTTAAG 3 cut(s) 565, 2084, 2296
VpaK11BI GGWCC 2 cut(s) 934, 1471
XagI CCTNNNNNAGG 3 cut(s) 2015, 2335, 3021
XapI RAATTY 5 cut(s) 94, 765, 1760, 1796, 2220
XbaI TCTAGA 1 cut(s) 1519
XceI RCATGY 3 cut(s) 1046, 1633, 3234
XhoI CTCGAG 1 cut(s) 600
XmaJI CCTAGG 1 cut(s) 2336
XmiI GTMKAC 2 cut(s) 2292, 3273
XmnI GAANNNNTTC 3 cut(s) 1254, 1512, 2254
Zsp2I ATGCAT 3 cut(s) 1482, 1635, 1693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.