MD08G1019400.v1.1

NB-ARC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000036
Physical Location & Seq
Forward (+)
1438725 .. 1441246
2522 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1019400.v1.1.491

Sequence Viewer

Length: 1908 bp
ATGCATGACATGATTCGTGCTATGGGAAGAGAAATTGTTCGCCAAGAATCAGAAGAGCTTGAGGAACGGAGTAGATTATGGCGCCATAAGGATTCTTTCCAAGTATTGAGGAAAAAGAATGGTACAAAAAAAATCCAAGGTCTTGTCCTGGATATGCGTAATCATCCTGCAAACAGTCCAATAAACACAAATGAGATAGTCTTGGAAACCAATGCATTTGCAAGGATGTGTAATTTACAACTACTCCATCTTAGTCATGTACGACTGGATGGATGTTATGCAGATTTCCCTACAGGATTAAGATGGGTGTGTTGGCTTGAATATCCTTTGGATTCTATACCAATTGATTTTCCTTTGGAGAACGTAATTGTTCTTGAAATGCAATACAGTAGCTTGAGACAAGTATGCAAAGGAACAAAATTTCTTCCATCGTTGAAGATCCTTGACGTCAGCCATTCTCATGGCCTTAGTGAAACCATTGACTTCTCACTTTTCCCCAATCTAGAGGAACTGATTCTTGTAGATTGCACAAGCCTGAAGAATGTTCATGAATCCATTGGAAACCTAGAGCGACTCGTGTACTTGAATATGAAGGATTGCAAGAATCTTAGGAAGCTTCCGAAGAACATGTGCATGCTTAAATCACTTGAAACGCTCATTTTATCTGGTTGCTCAAATCTTGATGAGTTTCCCTTGGAGATGATGAAGAAGATGGAGTCTCTGAAAGTTCTTGAGACAGATGGAATTCCAATAAGTGAATTGTGGCCAGAAAGAAGTTCAACTATCTTGAGTTCTTTTCCACGCTCTTTAGTAGAGTTAAGTCTGAAGGGATGCAATCTTTCTGATGATGTCTTTCCTACGGATTTAAGTAATTTATCCTACTTGCGAGGACTACATTTAGATGAGAATCCAATTTGCAGTCTGCCAGTTTTCATCAAAGGTTTGAGGAGGATCGATAAACTCTCTTTCAAGGGTTGTGATAGGCTTGAATCGCTTGTGGGGTTGCCGGAAGTACACCAAATAATGAGTATAGTCAGATGCATATCATTAAAAAAAATAACTTTTCATTCCCCTGGGCAACATCATCTATCACGTGTAATTTACAATGACAACCGGAATCTTGTTGAGGCGGAGTGTTTTTACAAGTTAGAGCCTATTGATAGAGTTGATGTGGAAATGATCAAACTTTTGGGCTTGTGCAACTTGGAATCCATGCCAGCTGTTCGAATGCATCATCCACTCACAAACTGGGATCTAATAGACGTCCCCGTCCAGGGACTGTATCAACATGGTATATTCAGCACCTTTTTTGTTAGGAATGAGGTTCCAGGCCTGTTCAGCTATAAAAGTACCAAGTCCTCGATATCTTTTATTGTCCCTTTACTACTTGCTAGTCACAGAATTCGAGGCTTAAACATCTTTGCTACCTATGCAAAGGAAAATTCAAATAATTATTCTACTGGACCTATTATTGCTCCAATAATGATCAAAGTGAGAAACAAGAGTAAGGGTCTGAAGTTGATCTATGACCCTGAGTTCTACGGAATTCCAGGTGACGGAGAAAATATGATATGGTTGAGCCATTGGATGATGGAGAATAAAACAATATTACAATGTGGAGATGAAGTGGTGGTTTCGGTAATAACCGGACCACGTGACATGTTTTGGGTAAAGGAGTTTGGTGTCGACCTTGTGCAAGAGCACCAAGACAAGATGAGTACCCAACACAACACCAAATCCGATCCTAATTATCCATTTGTTATCGGTGGAGATTTGAAGATGTTTGAGCGCAGACCGGGAATATACTTCCTTGGCAATTATGCAAGAAAAGATATTGATGACATTGATATCCTCACCATGGCCTCTGATGAAGAAGACACAAGTATACAAAGAAAGACAAGAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

636

Amino Acids

72.83

Weight (kDa)

6.31

Isoelectric Point (pI)

41.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_13 PF23286 141 - 229 2.4e-06 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 159 - 247 4.6e-07 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57630 AT1G72930 AT5G38344
fragaria_vesca FvH4_1g27020 FvH4_2g00931 FvH4_2g17330 FvH4_2g17330 FvH4_2g17340 FvH4_2g17350 FvH4_2g20690 FvH4_5g15301 FvH4_5g34194 FvH4_5g38530 FvH4_5g38740 FvH4_5g38740 FvH4_5g38740 FvH4_6g03800 FvH4_7g09791 FvH4_7g09800 FvH4_7g09800 FvH4_7g10510 FvH4_7g10520 FvH4_7g10520 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750 FvH4_7g10750
malus_domestica MD02G1217100.v1.1 MD02G1217200.v1.1 MD02G1217400.v1.1 MD02G1217600.v1.1 MD02G1264800.v1.1 MD02G1264900.v1.1 MD02G1302100.v1.1 MD04G1010700.v1.1 MD05G1006800.v1.1 MD05G1140100.v1.1 MD05G1140200.v1.1 MD05G1152200.v1.1 MD07G1073500.v1.1 MD07G1101700.v1.1 MD07G1102200.v1.1 MD07G1103200.v1.1 MD07G1112300.v1.1 MD08G1018200.v1.1 MD08G1018400.v1.1 MD08G1018800.v1.1 MD08G1019000.v1.1 MD08G1019100.v1.1 MD08G1019200.v1.1 MD08G1019300.v1.1 MD08G1019400.v1.1 MD08G1019600.v1.1 MD08G1019900.v1.1 MD08G1020000.v1.1 MD08G1020200.v1.1 MD08G1020500.v1.1 MD08G1020700.v1.1 MD08G1020800.v1.1 MD08G1040700.v1.1 MD11G1112400.v1.1 MD12G1068600.v1.1 MD12G1193200.v1.1 MD13G1050600.v1.1 MD15G1374900.v1.1 MD15G1375100.v1.1 MD15G1416500.v1.1 MD17G1072500.v1.1 MD17G1274200.v1.1 MD17G1274900.v1.1
prunus_persica Prupe.2G121000_v2.0.a1 Prupe.2G121000_v2.0.a1 Prupe.2G125800_v2.0.a1 Prupe.2G126000_v2.0.a1 Prupe.2G126100_v2.0.a1 Prupe.2G126200_v2.0.a1 Prupe.2G126300_v2.0.a1 Prupe.2G126400_v2.0.a1 Prupe.2G126500_v2.0.a1 Prupe.2G126600_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126700_v2.0.a1 Prupe.2G126800_v2.0.a1 Prupe.2G126900_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G127000_v2.0.a1 Prupe.2G135500_v2.0.a1 Prupe.2G135600_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.2G135700_v2.0.a1 Prupe.3G009800_v2.0.a1 Prupe.3G010200_v2.0.a1 Prupe.3G131000_v2.0.a1 Prupe.4G260800_v2.0.a1 Prupe.4G260900_v2.0.a1 Prupe.6G083100_v2.0.a1 Prupe.6G083200_v2.0.a1 Prupe.6G083400_v2.0.a1 Prupe.6G132100_v2.0.a1 Prupe.8G184900_v2.0.a1 Prupe.8G185200_v2.0.a1 Prupe.8G185300_v2.0.a1
pyrus_communis pycom02g17870 pycom02g17880 pycom02g19520 pycom02g22610 pycom02g22630 pycom02g22680 pycom05g13540 pycom05g14680 pycom07g04880 pycom07g04890 pycom07g05690 pycom07g05710 pycom07g05720 pycom07g05750 pycom07g05780 pycom07g06300 pycom07g08320 pycom07g08330 pycom07g08350 pycom07g08360 pycom07g08370 pycom07g08410 pycom07g08420 pycom07g08430 pycom07g08440 pycom07g08470 pycom07g08480 pycom07g08520 pycom07g08550 pycom07g08560 pycom07g08640 pycom07g08660 pycom07g08670 pycom07g08680 pycom07g08690 pycom07g08720 pycom07g08730 pycom07g08790 pycom07g08800 pycom07g08810 pycom07g08860 pycom07g08890 pycom07g09720 pycom08g01590 pycom08g01600 pycom08g01620 pycom08g01630 pycom08g01640 pycom10g12630 pycom15g16490 pycom17g07200 pycom17g07210 pycom17g07220 pycom17g11730 pycom17g11740 pycom17g27340 pycom17g27380
rosa_chinensis RchiOBHm_Chr1g0342571 RchiOBHm_Chr1g0346231 RchiOBHm_Chr1g0346831 RchiOBHm_Chr1g0346891 RchiOBHm_Chr1g0348311 RchiOBHm_Chr1g0348321 RchiOBHm_Chr1g0348331 RchiOBHm_Chr1g0348361 RchiOBHm_Chr1g0348371 RchiOBHm_Chr1g0348381 RchiOBHm_Chr1g0348401 RchiOBHm_Chr1g0348411 RchiOBHm_Chr1g0348421 RchiOBHm_Chr1g0348431 RchiOBHm_Chr2g0130881 RchiOBHm_Chr3g0487331 RchiOBHm_Chr5g0060371 RchiOBHm_Chr6g0246491 RchiOBHm_Chr6g0246871 RchiOBHm_Chr6g0250311 RchiOBHm_Chr6g0250781 RchiOBHm_Chr6g0251431 RchiOBHm_Chr6g0281871 RchiOBHm_Chr6g0281881 RchiOBHm_Chr6g0281931 RchiOBHm_Chr6g0281941 RchiOBHm_Chr6g0281951 RchiOBHm_Chr6g0281971 RchiOBHm_Chr6g0281981 RchiOBHm_Chr7g0240541 RchiOBHm_Chr7g0240631 RchiOBHm_Chr7g0240671
rosa_laevigata RLG00000000627 RLG00000000631 RLG00000000641 RLG00000000645 RLG00000000652 RLG00000000662 RLG00000000663 RLG00000000667 RLG00000000670 RLG00000000702 RLG00000001216 RLG00000001219 RLG00000007678 RLG00000012923 RLG00000012996 RLG00000013243 RLG00000017513 RLG00000017514 RLG00000020936 RLG00000022755 RLG00000023013 RLG00000028646 RLG00000028654 RLG00000028662 RLG00000028665 RLG00000028667 RLG00000028711 RLG00000028714 RLG00000028716 RLG00000028770 RLG00000028771 RLG00000028773 RLG00000028778 RLG00000028798 RLG00000028809 RLG00000028813 RLG00000029334 RLG00000030003 RLG00000033910 RLG00000034358 RLG00000035430
rosa_multiflora Rmu_co8031134.1_g000001 Rmu_co8092796.1_g000001 Rmu_co8130156.1_g000001 Rmu_co8325323.1_g000001 Rmu_co8424083.1_g000002 Rmu_sc0000008.1_g000003 Rmu_sc0000008.1_g000011 Rmu_sc0000008.1_g000015 Rmu_sc0000008.1_g000020 Rmu_sc0000091.1_g000015 Rmu_sc0000091.1_g000018 Rmu_sc0000091.1_g000029 Rmu_sc0000091.1_g000031 Rmu_sc0000391.1_g000004 Rmu_sc0001070.1_g000030 Rmu_sc0001293.1_g000016 Rmu_sc0001674.1_g000006 Rmu_sc0001731.1_g000002 Rmu_sc0001731.1_g000003 Rmu_sc0001731.1_g000005 Rmu_sc0001911.1_g000029 Rmu_sc0001913.1_g000038 Rmu_sc0001955.1_g000025 Rmu_sc0001992.1_g000022 Rmu_sc0001992.1_g000028 Rmu_sc0001992.1_g000031 Rmu_sc0002517.1_g000013 Rmu_sc0002517.1_g000017 Rmu_sc0002551.1_g000022 Rmu_sc0002551.1_g000029 Rmu_sc0002551.1_g000038 Rmu_sc0002705.1_g000015 Rmu_sc0002705.1_g000016 Rmu_sc0002882.1_g000055 Rmu_sc0003232.1_g000027 Rmu_sc0003363.1_g000037 Rmu_sc0003600.1_g000054 Rmu_sc0003918.1_g000011 Rmu_sc0004395.1_g000011 Rmu_sc0005071.1_g000004 Rmu_sc0005255.1_g000018 Rmu_sc0005327.1_g000004 Rmu_sc0005597.1_g000007 Rmu_sc0007060.1_g000007 Rmu_sc0007310.1_g000003 Rmu_sc0007383.1_g000014 Rmu_sc0007799.1_g000003 Rmu_sc0008477.1_g000016 Rmu_sc0010151.1_g000009 Rmu_sc0011217.1_g000005 Rmu_sc0016269.1_g000006 Rmu_sc0021495.1_g000001 Rmu_sc0027364.1_g000001 Rmu_sc0029432.1_g000001 Rmu_sc0041386.1_g000001 Rmu_ssc0000126.1_g000023 Rmu_ssc0000126.1_g000027
rosa_roxburghii Rroxscaffold_1G00006130 Rroxscaffold_1G00023320 Rroxscaffold_1G00038770 Rroxscaffold_2G00119800 Rroxscaffold_2G00121860 Rroxscaffold_3G00219780 Rroxscaffold_3G00219890 Rroxscaffold_4G00306740 Rroxscaffold_4G00306820 Rroxscaffold_4G00307000 Rroxscaffold_4G00307010 Rroxscaffold_4G00307020 Rroxscaffold_4G00308030 Rroxscaffold_4G00308070 Rroxscaffold_4G00308450 Rroxscaffold_4G00308460 Rroxscaffold_4G00315320 Rroxscaffold_5G00352470 Rroxscaffold_5G00371420 Rroxscaffold_6G00392300 Rroxscaffold_6G00394870 Rroxscaffold_6G00394890 Rroxscaffold_7G00186700 Rroxscaffold_7G00194980 Rroxscaffold_7G00216840
rosa_rugosa Rorug01G0076100 Rorug01G0128100 Rorug01G0149000.1 Rorug01G0149500.1 Rorug01G0180000 Rorug01G0180100 Rorug01G0182900 Rorug01G0184000 Rorug01G0184100 Rorug01G0184300 Rorug01G0184600 Rorug01G0184700 Rorug01G0184700 Rorug01G0184900 Rorug01G0185000 Rorug01G0185100 Rorug01G0189300 Rorug01G0194100 Rorug01G0194100 Rorug01G0194200 Rorug01G0194400 Rorug01G0194400 Rorug01G0194500 Rorug02G0090400 Rorug02G0090400 Rorug03G0233000 Rorug03G0233100 Rorug05G0178600 Rorug05G0178700 Rorug05G0579200 Rorug06G0144100 Rorug06G0144300 Rorug06G0144300 Rorug06G0179300 Rorug06G0208800 Rorug07G0323500 Rorug07G0337000
rosa_samantha Rh1AG046100 Rh1AG201400 Rh1AG201800 Rh1AG202100 Rh1AG202600 Rh1AG211500 Rh1AG211800 Rh1AG212200 Rh1AG212500 Rh1AG212600 Rh1AG214200 Rh1BG168000 Rh1BG168300 Rh1BG168500 Rh1BG177900 Rh1BG178200 Rh1BG178300 Rh1BG178800 Rh1BG178900 Rh1CG080900 Rh1CG183300 Rh1CG186300 Rh1CG186700 Rh1CG187000 Rh1CG187300 Rh1CG193400 Rh1CG195800 Rh1CG196000 Rh1CG196100 Rh1CG196400 Rh1CG196500 Rh1CG196800 Rh1CG198800 Rh1CG442600 Rh1DG086200 Rh1DG155400 Rh1DG156200 Rh1DG194000 Rh1DG194300 Rh1DG194900 Rh1DG197000 Rh1DG198800 Rh1DG199000 Rh1DG199200 Rh1DG202000 Rh1DG203900 Rh1DG207600 Rh1DG207900 Rh1DG208000 Rh1DG208500 Rh1DG208600 Rh1DG208700 Rh3CG339100 Rh5AG106500 Rh5AG264800 Rh5AG265300 Rh5CG302800 Rh5DG277900 Rh6AG257600 Rh6AG257700 Rh6BG260500 Rh6BG260700 Rh6CG259600 Rh6CG259700 Rh6DG252100 Rh7DG126900
rosa_wichuraiana Rw0G005780 Rw0G007540 Rw0G007550 Rw0G007560 Rw0G009390 Rw1G016900 Rw1G016930 Rw1G016940 Rw1G016970 Rw1G017860 Rw1G017890 Rw1G017900 Rw1G017910 Rw1G017920 Rw1G017960 Rw1G017970 Rw1G017980 Rw1G018150 Rw4G000830 Rw5G009290 Rw5G018950 Rw5G024850 Rw5G024870 Rw5G040460 Rw6G022290 Rw7G041020 Rw7G041200 Rw7G041360 Rw7G041450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1268
AatII GACGTC 2 cut(s) 450, 1266
AccB1I GGYRCC 1 cut(s) 81
AccI GTMKAC 2 cut(s) 1686, 1885
AciI CCGC 1 cut(s) 1130
AclWI GGATC 4 cut(s) 433, 959, 1260, 1736
AcoI YGGCCR 1 cut(s) 764
AcsI RAATTY 5 cut(s) 419, 744, 1401, 1441, 1545
AcuI CTGAAG 3 cut(s) 557, 845, 1535
AcvI CACGTG 2 cut(s) 1094, 1655
AcyI GRCGYC 3 cut(s) 82, 447, 1263
AfaI GTAC 6 cut(s) 124, 261, 581, 1014, 1351, 1720
AfiI CCNNNNNNNGG 4 cut(s) 1273, 1274, 1556, 1858
AflIII ACRYGT 3 cut(s) 627, 1093, 1659
AjnI CCWGG 5 cut(s) 147, 1072, 1272, 1327, 1549
AluBI AGCT 5 cut(s) 58, 393, 616, 1220, 1341
AluI AGCT 5 cut(s) 58, 393, 616, 1220, 1341
Alw21I GWGCWC 1 cut(s) 1704
Alw26I GTCTC 3 cut(s) 391, 723, 728
AlwI GGATC 4 cut(s) 433, 959, 1260, 1736
AlwNI CAGNNNCTG 1 cut(s) 1279
AoxI GGCC 4 cut(s) 463, 764, 1330, 1860
ApoI RAATTY 5 cut(s) 419, 744, 1401, 1441, 1545
Asp700I GAANNNNTTC 2 cut(s) 36, 513
AspLEI GCGC 2 cut(s) 84, 1791
AspS9I GGNCC 2 cut(s) 1463, 1649
AsuC2I CCSGG 1 cut(s) 1797
AsuHPI GGTGA 2 cut(s) 1565, 1846
AsuII TTCGAA 1 cut(s) 1225
AvaII GGWCC 2 cut(s) 1463, 1649
BalI TGGCCA 1 cut(s) 766
BanI GGYRCC 1 cut(s) 81
BauI CACGAG 1 cut(s) 575
BbrPI CACGTG 2 cut(s) 1094, 1655
BbsI GAAGAC 1 cut(s) 1881
Bbv12I GWGCWC 1 cut(s) 1704
BccI CCATC 7 cut(s) 255, 263, 297, 436, 706, 734, 1585
BciT130I CCWGG 5 cut(s) 149, 1074, 1274, 1329, 1551
BclI TGATCA 2 cut(s) 1179, 1485
BcnI CCSGG 1 cut(s) 1797
BcoDI GTCTC 3 cut(s) 391, 723, 728
BfaI CTAG 3 cut(s) 503, 566, 1392
BfmI CTRYAG 1 cut(s) 291
BfoI RGCGCY 1 cut(s) 85
Bme1390I CCNGG 6 cut(s) 149, 1074, 1274, 1329, 1551, 1797
Bme18I GGWCC 2 cut(s) 1463, 1649
BmgT120I GGNCC 2 cut(s) 1463, 1649
BmiI GGNNCC 2 cut(s) 83, 1326
BmrFI CCNGG 6 cut(s) 149, 1074, 1274, 1329, 1551, 1797
BmrI ACTGGG 1 cut(s) 1258
BmsI GCATC 3 cut(s) 821, 1028, 1240
BmuI ACTGGG 1 cut(s) 1258
BpiI GAAGAC 1 cut(s) 1881
Bpu14I TTCGAA 1 cut(s) 1225
BpuEI CTTGAG 4 cut(s) 80, 415, 752, 808
BpuMI CCSGG 1 cut(s) 1797
Bsa29I ATCGAT 1 cut(s) 954
BsaAI YACGTR 2 cut(s) 1094, 1655
BsaBI GATNNNNATC 2 cut(s) 906, 1042
BsaHI GRCGYC 3 cut(s) 82, 447, 1263
BsaJI CCNNGG 7 cut(s) 136, 693, 1072, 1073, 1273, 1810, 1857
BsaWI WCCGGW 2 cut(s) 1113, 1646
BsaXI ACNNNNNCTCC 4 cut(s) 228, 258, 1611, 1641
Bsc4I CCNNNNNNNGG 4 cut(s) 1273, 1274, 1556, 1858
Bse1I ACTGG 4 cut(s) 270, 926, 1253, 1465
Bse8I GATNNNNATC 2 cut(s) 906, 1042
BseBI CCWGG 5 cut(s) 149, 1074, 1274, 1329, 1551
BseCI ATCGAT 1 cut(s) 954
BseDI CCNNGG 7 cut(s) 136, 693, 1072, 1073, 1273, 1810, 1857
BseGI GGATG 7 cut(s) 163, 231, 274, 278, 836, 1234, 1593
BseJI GATNNNNATC 2 cut(s) 906, 1042
BseLI CCNNNNNNNGG 4 cut(s) 1273, 1274, 1556, 1858
BseMII CTCAG 1 cut(s) 1524
BseNI ACTGG 4 cut(s) 270, 926, 1253, 1465
BseRI GAGGAG 1 cut(s) 961
BshFI GGCC 4 cut(s) 465, 766, 1332, 1862
BshNI GGYRCC 1 cut(s) 81
BshVI ATCGAT 1 cut(s) 954
BsiHKAI GWGCWC 1 cut(s) 1704
BsiSI CCGG 4 cut(s) 1007, 1114, 1647, 1796
BslFI GGGAC 3 cut(s) 1250, 1290, 1361
BslI CCNNNNNNNGG 4 cut(s) 1273, 1274, 1556, 1858
BsmAI GTCTC 3 cut(s) 391, 723, 728
BsmFI GGGAC 3 cut(s) 1250, 1290, 1361
BsmI GAATGC 1 cut(s) 1233
BsnI GGCC 4 cut(s) 465, 766, 1332, 1862
Bsp119I TTCGAA 1 cut(s) 1225
Bsp1286I GDGCHC 1 cut(s) 1704
Bsp143I GATC 7 cut(s) 438, 951, 1179, 1252, 1485, 1521, 1741
Bsp19I CCATGG 1 cut(s) 1857
BspACI CCGC 1 cut(s) 1130
BspANI GGCC 4 cut(s) 465, 766, 1332, 1862
BspCNI CTCAG 1 cut(s) 1525
BspDI ATCGAT 1 cut(s) 954
BspHI TCATGA 1 cut(s) 547
BspLI GGNNCC 2 cut(s) 83, 1326
BspPI GGATC 4 cut(s) 433, 959, 1260, 1736
BspQI GCTCTTC 1 cut(s) 48
BspT104I TTCGAA 1 cut(s) 1225
BspT107I GGYRCC 1 cut(s) 81
BsrI ACTGG 4 cut(s) 270, 926, 1253, 1465
BssECI CCNNGG 7 cut(s) 136, 693, 1072, 1073, 1273, 1810, 1857
BssMI GATC 7 cut(s) 438, 951, 1179, 1252, 1485, 1521, 1741
BssNAI GTATAC 1 cut(s) 1886
BssNI GRCGYC 3 cut(s) 82, 447, 1263
BssSI CACGAG 1 cut(s) 575
BssT1I CCWWGG 4 cut(s) 136, 693, 1810, 1857
Bst1107I GTATAC 1 cut(s) 1886
Bst2BI CACGAG 1 cut(s) 575
Bst2UI CCWGG 5 cut(s) 149, 1074, 1274, 1329, 1551
Bst4CI ACNGT 3 cut(s) 176, 389, 1281
Bst6I CTCTTC 2 cut(s) 22, 48
BstACI GRCGYC 3 cut(s) 82, 447, 1263
BstBAI YACGTR 2 cut(s) 1094, 1655
BstBI TTCGAA 1 cut(s) 1225
BstC8I GCNNGC 2 cut(s) 635, 1218
BstDEI CTNAG 4 cut(s) 251, 467, 608, 1533
BstDSI CCRYGG 1 cut(s) 1857
BstF5I GGATG 7 cut(s) 163, 231, 274, 278, 836, 1234, 1593
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 2 cut(s) 84, 1791
BstKTI GATC 7 cut(s) 441, 954, 1182, 1255, 1488, 1524, 1744
BstMAI GTCTC 3 cut(s) 391, 723, 728
BstMBI GATC 7 cut(s) 438, 951, 1179, 1252, 1485, 1521, 1741
BstMWI GCNNNNNNNGC 3 cut(s) 991, 1338, 1430
BstNI CCWGG 5 cut(s) 149, 1074, 1274, 1329, 1551
BstNSI RCATGY 3 cut(s) 631, 637, 1663
BstSCI CCNGG 6 cut(s) 147, 1072, 1272, 1327, 1549, 1795
BstSFI CTRYAG 1 cut(s) 291
BstV2I GAAGAC 1 cut(s) 1881
BstX2I RGATCY 2 cut(s) 438, 1252
BstXI CCANNNNNNTGG 1 cut(s) 461
BstYI RGATCY 2 cut(s) 438, 1252
BstZ17I GTATAC 1 cut(s) 1886
Bsu15I ATCGAT 1 cut(s) 954
BsuRI GGCC 4 cut(s) 465, 766, 1332, 1862
BsuTUI ATCGAT 1 cut(s) 954
BtgI CCRYGG 1 cut(s) 1857
BtsCI GGATG 7 cut(s) 163, 231, 274, 278, 836, 1234, 1593
Cac8I GCNNGC 2 cut(s) 635, 1218
CaiI CAGNNNCTG 1 cut(s) 1279
CciI TCATGA 1 cut(s) 547
CfoI GCGC 2 cut(s) 84, 1791
Cfr13I GGNCC 2 cut(s) 1463, 1649
ClaI ATCGAT 1 cut(s) 954
Csp6I GTAC 6 cut(s) 123, 260, 580, 1013, 1350, 1719
CviQI GTAC 6 cut(s) 123, 260, 580, 1013, 1350, 1719
DdeI CTNAG 4 cut(s) 251, 467, 608, 1533
DinI GGCGCC 1 cut(s) 83
DpnI GATC 7 cut(s) 440, 953, 1181, 1254, 1487, 1523, 1743
DpnII GATC 7 cut(s) 438, 951, 1179, 1252, 1485, 1521, 1741
DrdI GACNNNNNNGTC 1 cut(s) 1268
DseDI GACNNNNNNGTC 1 cut(s) 1268
EaeI YGGCCR 1 cut(s) 764
Eam1104I CTCTTC 2 cut(s) 22, 48
EarI CTCTTC 2 cut(s) 22, 48
EciI GGCGGA 1 cut(s) 1145
Eco130I CCWWGG 4 cut(s) 136, 693, 1810, 1857
Eco147I AGGCCT 1 cut(s) 1332
Eco32I GATATC 2 cut(s) 1365, 1849
Eco47I GGWCC 2 cut(s) 1463, 1649
Eco57I CTGAAG 3 cut(s) 557, 845, 1535
Eco72I CACGTG 2 cut(s) 1094, 1655
EcoRI GAATTC 3 cut(s) 744, 1401, 1545
EcoRII CCWGG 5 cut(s) 147, 1072, 1272, 1327, 1549
EcoRV GATATC 2 cut(s) 1365, 1849
EcoT14I CCWWGG 4 cut(s) 136, 693, 1810, 1857
EcoT22I ATGCAT 4 cut(s) 6, 217, 1043, 1233
EgeI GGCGCC 1 cut(s) 83
EheI GGCGCC 1 cut(s) 83
ErhI CCWWGG 4 cut(s) 136, 693, 1810, 1857
FaqI GGGAC 3 cut(s) 1250, 1290, 1361
FbaI TGATCA 2 cut(s) 1179, 1485
FblI GTMKAC 2 cut(s) 1686, 1885
FokI GGATG 7 cut(s) 150, 238, 281, 285, 843, 1221, 1600
FspBI CTAG 3 cut(s) 503, 566, 1392
GlaI GCGC 2 cut(s) 83, 1790
HaeII RGCGCY 1 cut(s) 85
HaeIII GGCC 4 cut(s) 465, 766, 1332, 1862
HapII CCGG 4 cut(s) 1007, 1114, 1647, 1796
HhaI GCGC 2 cut(s) 84, 1791
Hin1I GRCGYC 3 cut(s) 82, 447, 1263
Hin6I GCGC 2 cut(s) 82, 1789
HinP1I GCGC 2 cut(s) 82, 1789
HincII GTYRAC 1 cut(s) 1687
HindII GTYRAC 1 cut(s) 1687
HindIII AAGCTT 1 cut(s) 614
HpaII CCGG 4 cut(s) 1007, 1114, 1647, 1796
HphI GGTGA 2 cut(s) 1565, 1846
Hpy166II GTNNAC 4 cut(s) 580, 1015, 1687, 1886
Hpy188I TCNGA 9 cut(s) 52, 621, 723, 825, 844, 1037, 1515, 1741, 1867
Hpy188III TCNNGA 6 cut(s) 374, 503, 548, 680, 731, 787
Hpy8I GTNNAC 4 cut(s) 580, 1015, 1687, 1886
HpyAV CCTTC 2 cut(s) 586, 820
HpyCH4III ACNGT 3 cut(s) 176, 389, 1281
HpyCH4IV ACGT 5 cut(s) 363, 447, 1093, 1263, 1654
HpyF10VI GCNNNNNNNGC 3 cut(s) 991, 1338, 1430
HpyF3I CTNAG 4 cut(s) 251, 467, 608, 1533
HpySE526I ACGT 5 cut(s) 363, 447, 1093, 1263, 1654
Hsp92I GRCGYC 3 cut(s) 82, 447, 1263
HspAI GCGC 2 cut(s) 82, 1789
KasI GGCGCC 1 cut(s) 81
Ksp22I TGATCA 2 cut(s) 1179, 1485
Kzo9I GATC 7 cut(s) 438, 951, 1179, 1252, 1485, 1521, 1741
LguI GCTCTTC 1 cut(s) 48
LmnI GCTCC 1 cut(s) 1480
LweI GCATC 3 cut(s) 821, 1028, 1240
MaeI CTAG 3 cut(s) 503, 566, 1392
MaeII ACGT 5 cut(s) 363, 447, 1093, 1263, 1654
MaeIII GTNAC 3 cut(s) 1394, 1553, 1655
MalI GATC 7 cut(s) 440, 953, 1181, 1254, 1487, 1523, 1743
MboI GATC 7 cut(s) 438, 951, 1179, 1252, 1485, 1521, 1741
MfeI CAATTG 1 cut(s) 342
MflI RGATCY 2 cut(s) 438, 1252
MhlI GDGCHC 1 cut(s) 1704
MlsI TGGCCA 1 cut(s) 766
MluNI TGGCCA 1 cut(s) 766
Mly113I GGCGCC 1 cut(s) 82
MlyI GAGTC 2 cut(s) 567, 725
Mox20I TGGCCA 1 cut(s) 766
Mph1103I ATGCAT 4 cut(s) 6, 217, 1043, 1233
MroXI GAANNNNTTC 2 cut(s) 36, 513
MscI TGGCCA 1 cut(s) 766
MseI TTAA 6 cut(s) 299, 639, 818, 866, 1049, 1412
MslI CAYNNNNRTG 3 cut(s) 459, 632, 900
Msp20I TGGCCA 1 cut(s) 766
MspA1I CMGCKG 1 cut(s) 1220
MspI CCGG 4 cut(s) 1007, 1114, 1647, 1796
MspR9I CCNGG 6 cut(s) 149, 1074, 1274, 1329, 1551, 1797
MunI CAATTG 1 cut(s) 342
Mva1269I GAATGC 1 cut(s) 1233
MvaI CCWGG 5 cut(s) 149, 1074, 1274, 1329, 1551
MwoI GCNNNNNNNGC 3 cut(s) 991, 1338, 1430
NarI GGCGCC 1 cut(s) 82
NciI CCSGG 1 cut(s) 1797
NcoI CCATGG 1 cut(s) 1857
NdeII GATC 7 cut(s) 438, 951, 1179, 1252, 1485, 1521, 1741
NlaIV GGNNCC 2 cut(s) 83, 1326
NmuCI GTSAC 3 cut(s) 1394, 1553, 1655
NsiI ATGCAT 4 cut(s) 6, 217, 1043, 1233
NspI RCATGY 3 cut(s) 631, 637, 1663
NspV TTCGAA 1 cut(s) 1225
PaeI GCATGC 1 cut(s) 637
PagI TCATGA 1 cut(s) 547
PasI CCCWGGG 1 cut(s) 1073
PceI AGGCCT 1 cut(s) 1332
PciI ACATGT 2 cut(s) 627, 1659
PciSI GCTCTTC 1 cut(s) 48
PctI GAATGC 1 cut(s) 1233
PdmI GAANNNNTTC 2 cut(s) 36, 513
PfoI TCCNGGA 1 cut(s) 147
PleI GAGTC 2 cut(s) 567, 724
PluTI GGCGCC 1 cut(s) 85
PmaCI CACGTG 2 cut(s) 1094, 1655
PmlI CACGTG 2 cut(s) 1094, 1655
PpsI GAGTC 2 cut(s) 567, 724
Ppu21I YACGTR 2 cut(s) 1094, 1655
PscI ACATGT 2 cut(s) 627, 1659
Psp6I CCWGG 5 cut(s) 147, 1072, 1272, 1327, 1549
PspCI CACGTG 2 cut(s) 1094, 1655
PspGI CCWGG 5 cut(s) 147, 1072, 1272, 1327, 1549
PspN4I GGNNCC 2 cut(s) 83, 1326
PspPI GGNCC 2 cut(s) 1463, 1649
PstNI CAGNNNCTG 1 cut(s) 1279
PsuI RGATCY 2 cut(s) 438, 1252
PvuII CAGCTG 1 cut(s) 1220
RsaI GTAC 6 cut(s) 124, 261, 581, 1014, 1351, 1720
RsaNI GTAC 6 cut(s) 123, 260, 580, 1013, 1350, 1719
RseI CAYNNNNRTG 3 cut(s) 459, 632, 900
SalI GTCGAC 1 cut(s) 1685
SapI GCTCTTC 1 cut(s) 48
SaqAI TTAA 6 cut(s) 299, 639, 818, 866, 1049, 1412
Sau3AI GATC 7 cut(s) 438, 951, 1179, 1252, 1485, 1521, 1741
Sau96I GGNCC 2 cut(s) 1463, 1649
SchI GAGTC 2 cut(s) 567, 725
ScrFI CCNGG 6 cut(s) 149, 1074, 1274, 1329, 1551, 1797
SduI GDGCHC 1 cut(s) 1704
SfaNI GCATC 3 cut(s) 821, 1028, 1240
SfcI CTRYAG 1 cut(s) 291
SfoI GGCGCC 1 cut(s) 83
SfuI TTCGAA 1 cut(s) 1225
SinI GGWCC 2 cut(s) 1463, 1649
SmiMI CAYNNNNRTG 3 cut(s) 459, 632, 900
SmlI CTYRAG 4 cut(s) 59, 394, 731, 787
SmoI CTYRAG 4 cut(s) 59, 394, 731, 787
SphI GCATGC 1 cut(s) 637
SseBI AGGCCT 1 cut(s) 1332
SsiI CCGC 1 cut(s) 1130
SspDI GGCGCC 1 cut(s) 81
SspI AATATT 1 cut(s) 1608
SspMI CTAG 3 cut(s) 503, 566, 1392
StuI AGGCCT 1 cut(s) 1332
StyD4I CCNGG 6 cut(s) 147, 1072, 1272, 1327, 1549, 1795
StyI CCWWGG 4 cut(s) 136, 693, 1810, 1857
TaaI ACNGT 3 cut(s) 176, 389, 1281
TaiI ACGT 5 cut(s) 366, 450, 1096, 1266, 1657
TaqI TCGA 5 cut(s) 954, 1225, 1361, 1405, 1686
TatI WGTACW 2 cut(s) 579, 1012
Tru1I TTAA 6 cut(s) 299, 639, 818, 866, 1049, 1412
Tru9I TTAA 6 cut(s) 299, 639, 818, 866, 1049, 1412
TseFI GTSAC 3 cut(s) 1394, 1553, 1655
Tsp45I GTSAC 3 cut(s) 1394, 1553, 1655
TspDTI ATGAA 8 cut(s) 536, 564, 605, 719, 922, 1055, 1638, 1884
TspGWI ACGGA 4 cut(s) 82, 875, 1557, 1572
VpaK11BI GGWCC 2 cut(s) 1463, 1649
XapI RAATTY 5 cut(s) 419, 744, 1401, 1441, 1545
XbaI TCTAGA 1 cut(s) 502
XceI RCATGY 3 cut(s) 631, 637, 1663
XcmI CCANNNNNNNNNTGG 1 cut(s) 1245
XmiI GTMKAC 2 cut(s) 1686, 1885
XmnI GAANNNNTTC 2 cut(s) 36, 513
XspI CTAG 3 cut(s) 503, 566, 1392
ZraI GACGTC 2 cut(s) 448, 1264
Zsp2I ATGCAT 4 cut(s) 6, 217, 1043, 1233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.