Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0008504

Physical Location & Seq

Genomic Coordinates Forward (+)

43917117 .. 43918977

Gene Structure 1861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG251300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGATCCTGAAGGAGCAAAGTTTGGAAGAGGACCAAGAGAGCTGACTGGTGCCGTAGATCTCATAAGTCACTACAAATTGCAAGCACACCATGAGTTTTTCTGCAAGCGTTCGCTTCCTGTATCAATTTCAGACACACACTATACCCACAATGTGGTGGGAGACACAGAAATCAGAAAAGGAGAGGGAATGCAATTGGATCAACTTATTCAGAGTACATATTCCAGGGATACTAAACCTCGAATACAGCCTTTTGACCTAGATATTCTCAGAGAGGCCTTCCAACTTAAAGAGACTGCTCCTATTGATTTGCCATCTAAAAGGAAACATGATGGAGATGAAGATCTTAATGATGTTCAGAGACACAAAAAAAGTAAGCATAAGAGCTCAAAACTAGATGAAGTTGGTGTGATCAAAGTAGCTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016592 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

16.12

Weight (kDa)

7.1

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12230 AT5G19480 AT5G19480 AT5G19480 AT5G19480
fragaria_vesca	FvH4_2g17320
malus_domestica	MD05G1152100.v1.1 MD10G1146700.v1.1
prunus_persica	Prupe.8G184800_v2.0.a1
pyrus_communis	pycom05g14670
rosa_chinensis	RchiOBHm_Chr6g0281841
rosa_laevigata	RLG00000012925
rosa_multiflora	Rmu_sc0001992.1_g000014 Rmu_ssc0000126.1_g000034
rosa_roxburghii	Rroxscaffold_7G00186740
rosa_rugosa	Rorug06G0143900 Rorug06G0144000 Rorug06G0144100
rosa_samantha	Rh6AG257100 Rh6BG260200 Rh6CG259200 Rh6DG251300
rosa_wichuraiana	Rw6G022270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	50
AccB7I	CCANNNNNTGG	1 cut(s)	154
AclWI	GGATC	2 cut(s)	12, 207
AcuI	CTGAAG	1 cut(s)	30
AdeI	CACNNNGTG	1 cut(s)	154
AfaI	GTAC	1 cut(s)	217
AfiI	CCNNNNNNNGG	1 cut(s)	154
AjnI	CCWGG	1 cut(s)	224
AluBI	AGCT	3 cut(s)	43, 387, 422
AluI	AGCT	3 cut(s)	43, 387, 422
Alw21I	GWGCWC	1 cut(s)	389
Alw26I	GTCTC	3 cut(s)	156, 287, 355
AlwI	GGATC	2 cut(s)	12, 207
AoxI	GGCC	1 cut(s)	276
AspS9I	GGNCC	1 cut(s)	32
AvaII	GGWCC	1 cut(s)	32
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	389
Bbv12I	GWGCWC	1 cut(s)	389
BccI	CCATC	2 cut(s)	322, 326
BceAI	ACGGC	1 cut(s)	38
BciT130I	CCWGG	1 cut(s)	226
BciVI	GTATCC	1 cut(s)	223
BclI	TGATCA	1 cut(s)	411
BcoDI	GTCTC	3 cut(s)	156, 287, 355
BfaI	CTAG	2 cut(s)	260, 395
BfuI	GTATCC	1 cut(s)	223
BglII	AGATCT	2 cut(s)	58, 343
Bme1390I	CCNGG	1 cut(s)	226
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	2 cut(s)	6, 52
BmrFI	CCNGG	1 cut(s)	226
BsaBI	GATNNNNATC	1 cut(s)	342
BsaJI	CCNNGG	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse1I	ACTGG	1 cut(s)	52
Bse8I	GATNNNNATC	1 cut(s)	342
BseBI	CCWGG	1 cut(s)	226
BseDI	CCNNGG	1 cut(s)	225
BseJI	GATNNNNATC	1 cut(s)	342
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMII	CTCAG	1 cut(s)	283
BseNI	ACTGG	1 cut(s)	52
BshFI	GGCC	1 cut(s)	278
BshNI	GGYRCC	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	389
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmAI	GTCTC	3 cut(s)	156, 287, 355
BsmI	GAATGC	1 cut(s)	195
BsnI	GGCC	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	389
Bsp143I	GATC	5 cut(s)	4, 58, 199, 343, 411
BspANI	GGCC	1 cut(s)	278
BspCNI	CTCAG	1 cut(s)	282
BspLI	GGNNCC	2 cut(s)	6, 52
BspPI	GGATC	2 cut(s)	12, 207
BspT107I	GGYRCC	1 cut(s)	50
BsrI	ACTGG	1 cut(s)	52
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	5 cut(s)	4, 58, 199, 343, 411
Bst2UI	CCWGG	1 cut(s)	226
Bst6I	CTCTTC	1 cut(s)	22
BstC8I	GCNNGC	3 cut(s)	84, 107, 424
BstDEI	CTNAG	1 cut(s)	269
BstKTI	GATC	5 cut(s)	7, 61, 202, 346, 414
BstMAI	GTCTC	3 cut(s)	156, 287, 355
BstMBI	GATC	5 cut(s)	4, 58, 199, 343, 411
BstNI	CCWGG	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	224
BstX2I	RGATCY	3 cut(s)	4, 58, 343
BstYI	RGATCY	3 cut(s)	4, 58, 343
BsuI	GTATCC	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	278
Cac8I	GCNNGC	3 cut(s)	84, 107, 424
Cfr13I	GGNCC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	216
CviAII	CATG	2 cut(s)	92, 329
CviJI	RGCY	6 cut(s)	43, 250, 278, 387, 422, 426
CviKI_1	RGCY	6 cut(s)	43, 250, 278, 387, 422, 426
CviQI	GTAC	1 cut(s)	216
DdeI	CTNAG	1 cut(s)	269
DpnI	GATC	5 cut(s)	6, 60, 201, 345, 413
DpnII	GATC	5 cut(s)	4, 58, 199, 343, 411
DraIII	CACNNNGTG	1 cut(s)	154
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
Ecl136II	GAGCTC	1 cut(s)	387
Eco147I	AGGCCT	1 cut(s)	278
Eco24I	GRGCYC	1 cut(s)	389
Eco47I	GGWCC	1 cut(s)	32
Eco53kI	GAGCTC	1 cut(s)	387
Eco57I	CTGAAG	1 cut(s)	30
EcoICRI	GAGCTC	1 cut(s)	387
EcoRII	CCWGG	1 cut(s)	224
EcoT38I	GRGCYC	1 cut(s)	389
FaeI	CATG	2 cut(s)	95, 332
FaiI	YATR	6 cut(s)	65, 93, 144, 220, 330, 381
FatI	CATG	2 cut(s)	91, 328
FbaI	TGATCA	1 cut(s)	411
FriOI	GRGCYC	1 cut(s)	389
FspBI	CTAG	2 cut(s)	260, 395
HaeIII	GGCC	1 cut(s)	278
Hin1II	CATG	2 cut(s)	95, 332
Hpy188I	TCNGA	5 cut(s)	133, 176, 213, 272, 360
Hpy188III	TCNNGA	1 cut(s)	8
HpyAV	CCTTC	2 cut(s)	5, 289
HpyCH4V	TGCA	3 cut(s)	82, 105, 193
HpyF3I	CTNAG	1 cut(s)	269
Hsp92II	CATG	2 cut(s)	95, 332
Ksp22I	TGATCA	1 cut(s)	411
Kzo9I	GATC	5 cut(s)	4, 58, 199, 343, 411
LmnI	GCTCC	2 cut(s)	14, 304
LpnPI	CCDG	6 cut(s)	21, 33, 132, 211, 238, 408
MaeI	CTAG	2 cut(s)	260, 395
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	5 cut(s)	6, 60, 201, 345, 413
MboI	GATC	5 cut(s)	4, 58, 199, 343, 411
MboII	GAAGA	2 cut(s)	39, 353
MfeI	CAATTG	1 cut(s)	194
MflI	RGATCY	3 cut(s)	4, 58, 343
MhlI	GDGCHC	1 cut(s)	389
MluCI	AATT	3 cut(s)	77, 126, 194
MmeI	TCCRAC	1 cut(s)	307
MnlI	CCTC	4 cut(s)	23, 178, 249, 268
MseI	TTAA	2 cut(s)	288, 348
MspR9I	CCNGG	1 cut(s)	226
MunI	CAATTG	1 cut(s)	194
Mva1269I	GAATGC	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	226
NdeII	GATC	5 cut(s)	4, 58, 199, 343, 411
NlaIII	CATG	2 cut(s)	95, 332
NlaIV	GGNNCC	2 cut(s)	6, 52
NmuCI	GTSAC	1 cut(s)	68
PceI	AGGCCT	1 cut(s)	278
PctI	GAATGC	1 cut(s)	195
PflMI	CCANNNNNTGG	1 cut(s)	154
Psp124BI	GAGCTC	1 cut(s)	389
Psp6I	CCWGG	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	224
PspN4I	GGNNCC	2 cut(s)	6, 52
PspPI	GGNCC	1 cut(s)	32
PsuI	RGATCY	3 cut(s)	4, 58, 343
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
SacI	GAGCTC	1 cut(s)	389
SaqAI	TTAA	2 cut(s)	288, 348
Sau3AI	GATC	5 cut(s)	4, 58, 199, 343, 411
Sau96I	GGNCC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	226
SduI	GDGCHC	1 cut(s)	389
SetI	ASST	5 cut(s)	45, 241, 261, 389, 424
SinI	GGWCC	1 cut(s)	32
Sse9I	AATT	3 cut(s)	77, 126, 194
SseBI	AGGCCT	1 cut(s)	278
SspMI	CTAG	2 cut(s)	260, 395
SstI	GAGCTC	1 cut(s)	389
StuI	AGGCCT	1 cut(s)	278
StyD4I	CCNGG	1 cut(s)	224
TaqI	TCGA	1 cut(s)	241
TasI	AATT	3 cut(s)	77, 126, 194
TatI	WGTACW	1 cut(s)	215
Tru1I	TTAA	2 cut(s)	288, 348
Tru9I	TTAA	2 cut(s)	288, 348
TseFI	GTSAC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	2 cut(s)	354, 414
Van91I	CCANNNNNTGG	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	32
XspI	CTAG	2 cut(s)	260, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.