AT5G12480

calcium-dependent protein kinase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
4047513 .. 4050643
3131 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G12480.1

Sequence Viewer

Length: 1608 bp
ATGGGGAATTGTTGTGGCAATCCGAGTTCGGCTACGAACCAGAGTAAACAAGGGAAACCCAAGAACAAAAACAATCCTTTTTACAGCAATGAATACGCTACAACAGATAGATCTGGAGCTGGTTTTAAGCTCTCTGTGCTGAAAGATCCTACAGGACATGATATATCCTTGCAGTATGATCTTGGACGTGAGGTTGGTCGAGGCGAGTTTGGTATAACTTACTTGTGTACTGATAAGGAAACTGGTGAGAAGTATGCCTGCAAGTCCATATCTAAGAAGAAGCTGAGAACAGCAGTTGATATAGAGGATGTTAGGAGGGAGGTTGAGATTATGAAGCATATGCCTAAACACCCAAATGTCGTCTCTTTGAAGGATTCCTTTGAGGATGATGATGCGGTGCATATAGTTATGGAGTTGTGTGAAGGAGGGGAACTGTTTGATCGGATTGTTGCAAGAGGTCATTACACTGAGCGGGCTGCTGCTGCGGTTATGAAGACTATTGTTGAAGTTGTTCAGATATGCCATAAGCAAGGAGTGATGCATCGGGATCTCAAACCAGAGAACTTTCTTTTTGCAAATAAGAAAGAGACATCAGCCCTTAAGGCCATTGATTTTGGATTATCTGTATTCTTCAAACCTGGTGAGCAGTTTAATGAGATTGTTGGAAGTCCTTATTACATGGCACCCGAGGTGCTGCGGCGAAACTATGGTCCTGAGATCGATGTGTGGAGCGCTGGAGTTATCCTCTATATCCTACTTTGTGGTGTTCCGCCATTTTGGGCAGAGACTGAGCAAGGGGTGGCTCAAGCGATCATTAGATCAGTTATTGACTTTAAGAGAGATCCATGGCCAAGAGTTTCTGACAGCGCCAAAGACCTTGTGAGAAAGATGCTTGAACCTGATCCCAAAAAACGGCTTACTGCTGCACAAGTTCTCGAACATACTTGGATACTGAATGCAAAGAAGGCTCCAAATGTCTCTCTTGGGGAGACTGTGAAAGCAAGACTAAAGCAGTTTTCTGTTATGAACAAGCTCAAGAAACGAGCTCTACGAGTGATAGCTGAACATTTGTCAGTGGAGGAAGCAGCAGGGATAAAGGAAGCATTTGAAATGATGGACGTAAACAAGAGAGGCAAGATAAATCTCGAGGAGCTTAAATATGGACTTCAAAAAGCTGGACAACAGATAGCTGATACTGATCTTCAAATTCTTATGGAAGCTACTGATGTTGATGGGGATGGGACACTGAACTATAGCGAGTTTGTTGCTGTTTCAGTCCACCTTAAGAAGATGGCGAATGATGAACACTTGCATAAAGCTTTTAACTTCTTTGATCAGAACCAGAGTGGTTACATAGAGATTGACGAACTTCGTGAAGCCTTGAATGATGAATTGGATAATACTAGCAGTGAGGAAGTAATCGCAGCCATCATGCAAGATGTTGATACCGACAAGGATGGACGAATAAGCTATGAAGAGTTTGTTGCGATGATGAAAGCTGGGACAGATTGGAGAAAAGCGTCAAGACAGTATTCTCGGGAAAGATTCAACAGTTTAAGCCTCAAGTTAATGAGAGATGGTTCATTGCAATTAGAAGGCGAGACCTAA

Protein Analysis

535

Amino Acids

60.31

Weight (kDa)

5.86

Isoelectric Point (pI)

39.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 59 - 317 6.6e-81 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 61 - 313 5.3e-26 Protein tyrosine and serine/threonine kinase
EF-hand_7 PF13499 365 - 423 1.5e-12 EF-hand domain pair
EF-hand_7 PF13499 435 - 499 3.4e-18 EF-hand domain pair
EF-hand_1 PF00036 437 - 462 7.3e-06 EF hand domain
EF-hand_6 PF13405 437 - 462 5.1e-06 EF-hand domain
EF-hand_1 PF00036 476 - 500 1.2e-07 EF hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 682
AccBSI CCGCTC 1 cut(s) 472
AciI CCGC 5 cut(s) 395, 472, 485, 697, 770
AclWI GGATC 4 cut(s) 140, 555, 836, 896
AcoI YGGCCR 1 cut(s) 848
AcsI RAATTY 1 cut(s) 1206
AfaI GTAC 1 cut(s) 229
AfeI AGCGCT 1 cut(s) 733
AfiI CCNNNNNNNGG 1 cut(s) 912
AflII CTTAAG 2 cut(s) 599, 1283
AgsI TTSAA 9 cut(s) 370, 506, 634, 896, 1109, 1169, 1205, 1384, 1549
AjiI CACGTC 1 cut(s) 188
AjnI CCWGG 1 cut(s) 637
AjuI GAANNNNNNNTTGG 2 cut(s) 1376, 1408
Alw21I GWGCWC 1 cut(s) 1048
Alw26I GTCTC 6 cut(s) 367, 581, 779, 982, 983, 1595
AlwI GGATC 4 cut(s) 140, 555, 836, 896
AlwNI CAGNNNCTG 1 cut(s) 788
Ama87I CYCGRG 3 cut(s) 686, 1145, 1536
Aor51HI AGCGCT 1 cut(s) 733
AoxI GGCC 2 cut(s) 603, 848
ApeKI GCWGC 7 cut(s) 476, 479, 482, 694, 923, 1085, 1424
ApoI RAATTY 1 cut(s) 1206
ArsI GACNNNNNNTTYG 2 cut(s) 694, 726
Asp700I GAANNNNTTC 1 cut(s) 510
AspLEI GCGC 2 cut(s) 734, 869
AspS9I GGNCC 1 cut(s) 710
AsuHPI GGTGA 2 cut(s) 257, 653
AvaI CYCGRG 3 cut(s) 686, 1145, 1536
AvaII GGWCC 1 cut(s) 710
BalI TGGCCA 1 cut(s) 850
BanI GGYRCC 1 cut(s) 682
BanII GRGCYC 1 cut(s) 1048
BbsI GAAGAC 1 cut(s) 500
Bbv12I GWGCWC 1 cut(s) 1048
BbvI GCAGC 7 cut(s) 463, 466, 469, 681, 910, 1097, 1436
BccI CCATC 7 cut(s) 1108, 1226, 1232, 1285, 1436, 1451, 1571
BceAI ACGGC 1 cut(s) 929
BcgI CGANNNNNNTGC 2 cut(s) 1247, 1281
BciT130I CCWGG 1 cut(s) 639
BciVI GTATCC 1 cut(s) 942
BclI TGATCA 1 cut(s) 1333
BcoDI GTCTC 6 cut(s) 367, 581, 779, 982, 983, 1595
BfaI CTAG 1 cut(s) 1404
BfmI CTRYAG 2 cut(s) 150, 1252
BfoI RGCGCY 2 cut(s) 735, 870
BfrI CTTAAG 2 cut(s) 599, 1283
BfuI GTATCC 1 cut(s) 942
BglI GCCNNNNNGGC 1 cut(s) 602
BglII AGATCT 1 cut(s) 110
BisI GCNGC 8 cut(s) 477, 480, 483, 695, 698, 924, 1086, 1425
BlsI GCNGC 8 cut(s) 478, 481, 484, 696, 699, 925, 1087, 1426
Bme1390I CCNGG 1 cut(s) 639
Bme18I GGWCC 1 cut(s) 710
BmeT110I CYCGRG 3 cut(s) 686, 1145, 1536
BmgBI CACGTC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 710
BmiI GGNNCC 2 cut(s) 684, 969
BmrFI CCNGG 1 cut(s) 639
BmsI GCATC 4 cut(s) 382, 528, 550, 879
BpiI GAAGAC 1 cut(s) 500
BplI GAGNNNNNCTC 2 cut(s) 729, 761
BpmI CTGGAG 2 cut(s) 135, 756
BpuEI CTTGAG 3 cut(s) 789, 1019, 1547
Bsa29I ATCGAT 1 cut(s) 720
BsaBI GATNNNNATC 1 cut(s) 1197
BsaI GGTCTC 1 cut(s) 1595
BsaJI CCNNGG 2 cut(s) 687, 845
Bsc4I CCNNNNNNNGG 1 cut(s) 912
Bse1I ACTGG 1 cut(s) 247
Bse3DI GCAATG 2 cut(s) 94, 1583
Bse8I GATNNNNATC 1 cut(s) 1197
BseBI CCWGG 1 cut(s) 639
BseCI ATCGAT 1 cut(s) 720
BseDI CCNNGG 2 cut(s) 687, 845
BseGI GGATG 4 cut(s) 313, 391, 1243, 1462
BseJI GATNNNNATC 1 cut(s) 1197
BseLI CCNNNNNNNGG 1 cut(s) 912
BseMI GCAATG 2 cut(s) 94, 1583
BseMII CTCAG 4 cut(s) 275, 459, 705, 780
BseNI ACTGG 1 cut(s) 247
BseRI GAGGAG 1 cut(s) 1163
BseXI GCAGC 7 cut(s) 463, 466, 469, 681, 910, 1097, 1436
BseYI CCCAGC 1 cut(s) 1499
BsgI GTGCAG 1 cut(s) 909
BshFI GGCC 2 cut(s) 605, 850
BshNI GGYRCC 1 cut(s) 682
BshVI ATCGAT 1 cut(s) 720
BsiHKAI GWGCWC 1 cut(s) 1048
BsiHKCI CYCGRG 3 cut(s) 686, 1145, 1536
BslFI GGGAC 2 cut(s) 1255, 1516
BslI CCNNNNNNNGG 1 cut(s) 912
BsmAI GTCTC 6 cut(s) 367, 581, 779, 982, 983, 1595
BsmBI CGTCTC 1 cut(s) 367
BsmFI GGGAC 2 cut(s) 1255, 1516
BsmI GAATGC 1 cut(s) 961
BsnI GGCC 2 cut(s) 605, 850
Bso31I GGTCTC 1 cut(s) 1595
BsoBI CYCGRG 3 cut(s) 686, 1145, 1536
Bsp1286I GDGCHC 1 cut(s) 1048
Bsp19I CCATGG 1 cut(s) 845
BspACI CCGC 5 cut(s) 395, 472, 485, 697, 770
BspANI GGCC 2 cut(s) 605, 850
BspCNI CTCAG 4 cut(s) 276, 460, 706, 781
BspDI ATCGAT 1 cut(s) 720
BspLI GGNNCC 2 cut(s) 684, 969
BspPI GGATC 4 cut(s) 140, 555, 836, 896
BspT107I GGYRCC 1 cut(s) 682
BspTI CTTAAG 2 cut(s) 599, 1283
BspTNI GGTCTC 1 cut(s) 1595
BsrBI CCGCTC 1 cut(s) 472
BsrDI GCAATG 2 cut(s) 94, 1583
BsrI ACTGG 1 cut(s) 247
BssECI CCNNGG 2 cut(s) 687, 845
BssT1I CCWWGG 1 cut(s) 845
Bst2UI CCWGG 1 cut(s) 639
Bst4CI ACNGT 4 cut(s) 435, 994, 1530, 1553
Bst6I CTCTTC 1 cut(s) 1470
BstAFI CTTAAG 2 cut(s) 599, 1283
BstC8I GCNNGC 2 cut(s) 259, 474
BstDEI CTNAG 5 cut(s) 273, 284, 468, 714, 789
BstDSI CCRYGG 1 cut(s) 845
BstF5I GGATG 4 cut(s) 313, 391, 1243, 1462
BstH2I RGCGCY 2 cut(s) 735, 870
BstHHI GCGC 2 cut(s) 734, 869
BstMAI GTCTC 6 cut(s) 367, 581, 779, 982, 983, 1595
BstMWI GCNNNNNNNGC 4 cut(s) 136, 482, 602, 965
BstNI CCWGG 1 cut(s) 639
BstSCI CCNGG 1 cut(s) 637
BstSFI CTRYAG 2 cut(s) 150, 1252
BstV1I GCAGC 7 cut(s) 463, 466, 469, 681, 910, 1097, 1436
BstV2I GAAGAC 1 cut(s) 500
BstX2I RGATCY 4 cut(s) 110, 145, 547, 841
BstYI RGATCY 4 cut(s) 110, 145, 547, 841
Bsu15I ATCGAT 1 cut(s) 720
BsuI GTATCC 1 cut(s) 942
BsuRI GGCC 2 cut(s) 605, 850
BsuTUI ATCGAT 1 cut(s) 720
BtgI CCRYGG 1 cut(s) 845
BtgZI GCGATG 1 cut(s) 1502
BtrI CACGTC 1 cut(s) 188
BtsCI GGATG 4 cut(s) 313, 391, 1243, 1462
BtsI GCAGTG 1 cut(s) 1414
BtsIMutI CAGTG 4 cut(s) 465, 1080, 1244, 1414
Cac8I GCNNGC 2 cut(s) 259, 474
CaiI CAGNNNCTG 1 cut(s) 788
CfoI GCGC 2 cut(s) 734, 869
Cfr13I GGNCC 1 cut(s) 710
ClaI ATCGAT 1 cut(s) 720
CseI GACGC 1 cut(s) 1509
CsiI ACCWGGT 1 cut(s) 637
Csp6I GTAC 1 cut(s) 228
CviAII CATG 4 cut(s) 158, 679, 846, 1432
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 5 cut(s) 273, 284, 468, 714, 789
EaeI YGGCCR 1 cut(s) 848
Eam1104I CTCTTC 1 cut(s) 1470
EarI CTCTTC 1 cut(s) 1470
EciI GGCGGA 1 cut(s) 759
Ecl136II GAGCTC 1 cut(s) 1046
Eco130I CCWWGG 1 cut(s) 845
Eco24I GRGCYC 1 cut(s) 1048
Eco31I GGTCTC 1 cut(s) 1595
Eco47I GGWCC 1 cut(s) 710
Eco47III AGCGCT 1 cut(s) 733
Eco53kI GAGCTC 1 cut(s) 1046
Eco88I CYCGRG 3 cut(s) 686, 1145, 1536
EcoICRI GAGCTC 1 cut(s) 1046
EcoRII CCWGG 1 cut(s) 637
EcoT14I CCWWGG 1 cut(s) 845
EcoT22I ATGCAT 1 cut(s) 543
EcoT38I GRGCYC 1 cut(s) 1048
ErhI CCWWGG 1 cut(s) 845
Esp3I CGTCTC 1 cut(s) 367
FaeI CATG 4 cut(s) 161, 682, 849, 1435
FalI AAGNNNNNCTT 2 cut(s) 362, 394
FaqI GGGAC 2 cut(s) 1255, 1516
FatI CATG 4 cut(s) 157, 678, 845, 1431
FauI CCCGC 1 cut(s) 465
FauNDI CATATG 1 cut(s) 339
FbaI TGATCA 1 cut(s) 1333
Fnu4HI GCNGC 8 cut(s) 477, 480, 483, 695, 698, 924, 1086, 1425
FokI GGATG 4 cut(s) 320, 398, 1250, 1469
FriOI GRGCYC 1 cut(s) 1048
Fsp4HI GCNGC 8 cut(s) 477, 480, 483, 695, 698, 924, 1086, 1425
FspBI CTAG 1 cut(s) 1404
GlaI GCGC 2 cut(s) 733, 868
GluI GCNGC 8 cut(s) 477, 480, 483, 695, 698, 924, 1086, 1425
GsaI CCCAGC 1 cut(s) 1503
GsuI CTGGAG 2 cut(s) 135, 756
HaeII RGCGCY 2 cut(s) 735, 870
HaeIII GGCC 2 cut(s) 605, 850
HgaI GACGC 1 cut(s) 1509
HhaI GCGC 2 cut(s) 734, 869
Hin1II CATG 4 cut(s) 161, 682, 849, 1435
Hin6I GCGC 2 cut(s) 732, 867
HinP1I GCGC 2 cut(s) 732, 867
HindIII AAGCTT 1 cut(s) 1317
HinfI GANTC 2 cut(s) 374, 1545
HphI GGTGA 2 cut(s) 257, 653
Hpy166II GTNNAC 4 cut(s) 47, 228, 1123, 1279
Hpy188I TCNGA 5 cut(s) 24, 444, 516, 862, 1338
Hpy188III TCNNGA 9 cut(s) 114, 545, 713, 935, 1036, 1145, 1373, 1524, 1538
Hpy8I GTNNAC 4 cut(s) 47, 228, 1123, 1279
HpyAV CCTTC 4 cut(s) 364, 416, 958, 1589
HpyCH4III ACNGT 4 cut(s) 435, 994, 1530, 1553
HpyCH4IV ACGT 2 cut(s) 187, 1119
HpyF10VI GCNNNNNNNGC 4 cut(s) 136, 482, 602, 965
HpyF3I CTNAG 5 cut(s) 273, 284, 468, 714, 789
HpySE526I ACGT 2 cut(s) 187, 1119
Hsp92II CATG 4 cut(s) 161, 682, 849, 1435
HspAI GCGC 2 cut(s) 732, 867
Ksp22I TGATCA 1 cut(s) 1333
LmnI GCTCC 4 cut(s) 116, 729, 973, 1150
Lsp1109I GCAGC 7 cut(s) 463, 466, 469, 681, 910, 1097, 1436
LweI GCATC 4 cut(s) 382, 528, 550, 879
MabI ACCWGGT 1 cut(s) 637
MaeI CTAG 1 cut(s) 1404
MaeII ACGT 2 cut(s) 187, 1119
MaeIII GTNAC 1 cut(s) 1349
MbiI CCGCTC 1 cut(s) 472
MboII GAAGA 6 cut(s) 289, 505, 622, 1193, 1300, 1487
MflI RGATCY 4 cut(s) 110, 145, 547, 841
MhlI GDGCHC 1 cut(s) 1048
MlsI TGGCCA 1 cut(s) 850
MluCI AATT 4 cut(s) 7, 1206, 1391, 1589
MluNI TGGCCA 1 cut(s) 850
MmeI TCCRAC 1 cut(s) 643
Mox20I TGGCCA 1 cut(s) 850
Mph1103I ATGCAT 1 cut(s) 543
MroXI GAANNNNTTC 1 cut(s) 510
MscI TGGCCA 1 cut(s) 850
MseI TTAA 9 cut(s) 126, 600, 651, 834, 1155, 1284, 1323, 1556, 1568
MslI CAYNNNNRTG 1 cut(s) 354
Msp20I TGGCCA 1 cut(s) 850
MspCI CTTAAG 2 cut(s) 599, 1283
MspR9I CCNGG 1 cut(s) 639
Mva1269I GAATGC 1 cut(s) 961
MvaI CCWGG 1 cut(s) 639
MwoI GCNNNNNNNGC 4 cut(s) 136, 482, 602, 965
NcoI CCATGG 1 cut(s) 845
NdeI CATATG 1 cut(s) 339
NlaIII CATG 4 cut(s) 161, 682, 849, 1435
NlaIV GGNNCC 2 cut(s) 684, 969
NsiI ATGCAT 1 cut(s) 543
PaeR7I CTCGAG 1 cut(s) 1145
PcsI WCGNNNNNNNCGW 1 cut(s) 1048
PctI GAATGC 1 cut(s) 961
PdmI GAANNNNTTC 1 cut(s) 510
PfeI GAWTC 2 cut(s) 374, 1545
PkrI GCNGC 8 cut(s) 478, 481, 484, 696, 699, 925, 1087, 1426
Psp124BI GAGCTC 1 cut(s) 1048
Psp6I CCWGG 1 cut(s) 637
PspFI CCCAGC 1 cut(s) 1499
PspGI CCWGG 1 cut(s) 637
PspN4I GGNNCC 2 cut(s) 684, 969
PspPI GGNCC 1 cut(s) 710
PstNI CAGNNNCTG 1 cut(s) 788
PsuI RGATCY 4 cut(s) 110, 145, 547, 841
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
RseI CAYNNNNRTG 1 cut(s) 354
SacI GAGCTC 1 cut(s) 1048
SaqAI TTAA 9 cut(s) 126, 600, 651, 834, 1155, 1284, 1323, 1556, 1568
SatI GCNGC 8 cut(s) 477, 480, 483, 695, 698, 924, 1086, 1425
Sau96I GGNCC 1 cut(s) 710
ScrFI CCNGG 1 cut(s) 639
SduI GDGCHC 1 cut(s) 1048
SexAI ACCWGGT 1 cut(s) 637
SfaNI GCATC 4 cut(s) 382, 528, 550, 879
SfcI CTRYAG 2 cut(s) 150, 1252
Sfr274I CTCGAG 1 cut(s) 1145
SinI GGWCC 1 cut(s) 710
SlaI CTCGAG 1 cut(s) 1145
SmiMI CAYNNNNRTG 1 cut(s) 354
SmlI CTYRAG 6 cut(s) 599, 804, 1034, 1145, 1283, 1562
SmoI CTYRAG 6 cut(s) 599, 804, 1034, 1145, 1283, 1562
Sse9I AATT 4 cut(s) 7, 1206, 1391, 1589
SsiI CCGC 5 cut(s) 395, 472, 485, 697, 770
SspMI CTAG 1 cut(s) 1404
SstI GAGCTC 1 cut(s) 1048
StyD4I CCNGG 1 cut(s) 637
StyI CCWWGG 1 cut(s) 845
TaaI ACNGT 4 cut(s) 435, 994, 1530, 1553
TaiI ACGT 2 cut(s) 190, 1122
TaqI TCGA 4 cut(s) 199, 720, 936, 1146
TasI AATT 4 cut(s) 7, 1206, 1391, 1589
TatI WGTACW 1 cut(s) 227
TauI GCSGC 1 cut(s) 700
TfiI GAWTC 2 cut(s) 374, 1545
Tru1I TTAA 9 cut(s) 126, 600, 651, 834, 1155, 1284, 1323, 1556, 1568
Tru9I TTAA 9 cut(s) 126, 600, 651, 834, 1155, 1284, 1323, 1556, 1568
TscAI CASTG 4 cut(s) 472, 1080, 1251, 1414
TseI GCWGC 7 cut(s) 476, 479, 482, 694, 923, 1085, 1424
TspDTI ATGAA 9 cut(s) 105, 347, 506, 1040, 1317, 1404, 1488, 1508, 1572
TspRI CASTG 4 cut(s) 472, 1080, 1251, 1414
Vha464I CTTAAG 2 cut(s) 599, 1283
VpaK11BI GGWCC 1 cut(s) 710
XapI RAATTY 1 cut(s) 1206
XhoI CTCGAG 1 cut(s) 1145
XmnI GAANNNNTTC 1 cut(s) 510
XspI CTAG 1 cut(s) 1404
Zsp2I ATGCAT 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.