Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008187

Physical Location & Seq

Genomic Coordinates Forward (+)

30800020 .. 30801653

Gene Structure 1634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0272900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGAAGCAGAGATGAACAAGAAGAAGCTGGCGGTGGGCCTTGTCATCCTTACGGTCTTCATTTCCCGTATCGGAGCTTGGACCGGTGAAATCAACGGCAGAGTTATCTGTGATGTTTGCGGCGACTCCGCCCTCGGACCTGAAGATCATATTCTAGAAGGTGCTGAGGTAGCTGTTCTATGCATCACAAAATCTGGGGAAGTTCTAAATTACCAGGCATTCACGAATGCTAAGGGGAGATATACAGTGGCAGAGACGATGCCTGAAAGTGACCGCTGGGATGCGTGCCTGGCACGACCTATCAGCAGCTTCCATGAGCACTGCACTCATCTCAGGGGTGCCAGCTCAGGAGTAAAGTTCAGTTATAATCATCCATCAGGTTATTCTCACACCGTCAGAACTTTTGTCTATCGACCATCTAGTGTACCAGTATACTGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8 Pkinase

Protein Analysis

147

Amino Acids

16.11

Weight (kDa)

6.58

Isoelectric Point (pI)

40.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pollen_Ole_e_1	PF01190	31 - 117	4.2e-08	Pollen protein Ole e 1 like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12480 AT5G12480 AT5G19450 AT5G19450
fragaria_vesca	FvH4_3g28740 FvH4_3g28740 FvH4_3g28740 FvH4_3g28740
malus_domestica	MD03G1173900.v1.1 MD11G1192100.v1.1
prunus_persica	Prupe.4G250200_v2.0.a1 Prupe.4G250200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0052321
rosa_laevigata	RLG00000034825
rosa_multiflora	Rmu_sc0000968.1_g000007 Rmu_sc0028377.1_g000006
rosa_roxburghii	Rroxscaffold_1G00028230
rosa_rugosa	Rorug05G0272800 Rorug05G0272900
rosa_samantha	Rh5AG345400 Rh5CG381800 Rh5DG371600
rosa_wichuraiana	Rw5G032600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	366
AccB1I	GGYRCC	1 cut(s)	338
AccI	GTMKAC	1 cut(s)	432
AciI	CCGC	4 cut(s)	32, 120, 129, 274
AcuI	CTGAAG	1 cut(s)	162
AfaI	GTAC	1 cut(s)	426
AgeI	ACCGGT	1 cut(s)	83
AjnI	CCWGG	2 cut(s)	213, 288
AluBI	AGCT	5 cut(s)	28, 77, 173, 309, 345
AluI	AGCT	5 cut(s)	28, 77, 173, 309, 345
Alw21I	GWGCWC	1 cut(s)	321
Alw26I	GTCTC	1 cut(s)	248
AoxI	GGCC	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	306
AsiGI	ACCGGT	1 cut(s)	83
AspS9I	GGNCC	3 cut(s)	37, 81, 137
AsuHPI	GGTGA	1 cut(s)	98
AvaII	GGWCC	2 cut(s)	81, 137
BanI	GGYRCC	1 cut(s)	338
BbsI	GAAGAC	1 cut(s)	49
Bbv12I	GWGCWC	1 cut(s)	321
BbvCI	CCTCAGC	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	318
BccI	CCATC	2 cut(s)	382, 424
BceAI	ACGGC	1 cut(s)	112
BciT130I	CCWGG	2 cut(s)	215, 290
BcoDI	GTCTC	1 cut(s)	248
BfaI	CTAG	2 cut(s)	155, 420
BisI	GCNGC	2 cut(s)	121, 307
BlsI	GCNGC	2 cut(s)	122, 308
Bme1390I	CCNGG	2 cut(s)	215, 290
Bme18I	GGWCC	2 cut(s)	81, 137
BmgT120I	GGNCC	3 cut(s)	37, 81, 137
BmiI	GGNNCC	1 cut(s)	340
BmrFI	CCNGG	2 cut(s)	215, 290
BmsI	GCATC	3 cut(s)	192, 249, 271
BpiI	GAAGAC	1 cut(s)	49
Bpu10I	CCTNAGC	3 cut(s)	165, 231, 346
BsaJI	CCNNGG	1 cut(s)	133
BsaWI	WCCGGW	1 cut(s)	83
Bse118I	RCCGGY	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	428
BseBI	CCWGG	2 cut(s)	215, 290
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	3 cut(s)	45, 286, 370
BseMII	CTCAG	3 cut(s)	156, 346, 360
BseNI	ACTGG	1 cut(s)	428
BseXI	GCAGC	1 cut(s)	318
BseYI	CCCAGC	1 cut(s)	276
BsgI	GTGCAG	1 cut(s)	307
BshFI	GGCC	1 cut(s)	39
BshNI	GGYRCC	1 cut(s)	338
BshTI	ACCGGT	1 cut(s)	83
BsiHKAI	GWGCWC	1 cut(s)	321
BsiSI	CCGG	1 cut(s)	84
BsmAI	GTCTC	1 cut(s)	248
BsmBI	CGTCTC	1 cut(s)	248
BsmI	GAATGC	2 cut(s)	218, 232
BsnI	GGCC	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	1 cut(s)	145
BspACI	CCGC	4 cut(s)	32, 120, 129, 274
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	3 cut(s)	157, 345, 359
BspLI	GGNNCC	1 cut(s)	340
BspT107I	GGYRCC	1 cut(s)	338
BsrFI	RCCGGY	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	428
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	1 cut(s)	145
BssNAI	GTATAC	1 cut(s)	433
Bst1107I	GTATAC	1 cut(s)	433
Bst2UI	CCWGG	2 cut(s)	215, 290
Bst4CI	ACNGT	3 cut(s)	55, 247, 394
BstC8I	GCNNGC	3 cut(s)	30, 286, 343
BstDEI	CTNAG	4 cut(s)	165, 231, 332, 346
BstF5I	GGATG	3 cut(s)	45, 286, 370
BstKTI	GATC	1 cut(s)	148
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 290
BstNI	CCWGG	2 cut(s)	215, 290
BstSCI	CCNGG	2 cut(s)	213, 288
BstV1I	GCAGC	1 cut(s)	318
BstV2I	GAAGAC	1 cut(s)	49
BstZ17I	GTATAC	1 cut(s)	433
BsuRI	GGCC	1 cut(s)	39
BtsCI	GGATG	3 cut(s)	45, 286, 370
BtsI	GCAGTG	1 cut(s)	319
BtsIMutI	CAGTG	2 cut(s)	252, 319
Cac8I	GCNNGC	3 cut(s)	30, 286, 343
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	3 cut(s)	37, 81, 137
Csp6I	GTAC	1 cut(s)	425
CspAI	ACCGGT	1 cut(s)	83
CviAII	CATG	1 cut(s)	314
CviJI	RGCY	6 cut(s)	28, 39, 77, 173, 309, 345
CviKI_1	RGCY	6 cut(s)	28, 39, 77, 173, 309, 345
CviQI	GTAC	1 cut(s)	425
DdeI	CTNAG	4 cut(s)	165, 231, 332, 346
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
EciI	GGCGGA	1 cut(s)	118
Eco47I	GGWCC	2 cut(s)	81, 137
Eco57I	CTGAAG	1 cut(s)	162
EcoRII	CCWGG	2 cut(s)	213, 288
EcoT22I	ATGCAT	1 cut(s)	185
Esp3I	CGTCTC	1 cut(s)	248
FaeI	CATG	1 cut(s)	317
FaiI	YATR	6 cut(s)	150, 181, 243, 315, 366, 433
FatI	CATG	1 cut(s)	313
FblI	GTMKAC	1 cut(s)	432
Fnu4HI	GCNGC	2 cut(s)	121, 307
FokI	GGATG	3 cut(s)	32, 293, 357
Fsp4HI	GCNGC	2 cut(s)	121, 307
FspBI	CTAG	2 cut(s)	155, 420
GluI	GCNGC	2 cut(s)	121, 307
GsaI	CCCAGC	1 cut(s)	280
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	1 cut(s)	84
Hin1II	CATG	1 cut(s)	317
HinfI	GANTC	1 cut(s)	125
HpaII	CCGG	1 cut(s)	84
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	2 cut(s)	425, 433
Hpy188I	TCNGA	3 cut(s)	74, 137, 398
Hpy188III	TCNNGA	3 cut(s)	155, 223, 348
Hpy8I	GTNNAC	2 cut(s)	425, 433
HpyAV	CCTTC	1 cut(s)	152
HpyCH4III	ACNGT	3 cut(s)	55, 247, 394
HpyCH4V	TGCA	3 cut(s)	183, 324, 438
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 290
HpyF3I	CTNAG	4 cut(s)	165, 231, 332, 346
Hsp92II	CATG	1 cut(s)	317
Kzo9I	GATC	1 cut(s)	145
LmnI	GCTCC	1 cut(s)	74
Lsp1109I	GCAGC	1 cut(s)	318
LweI	GCATC	3 cut(s)	192, 249, 271
MaeI	CTAG	2 cut(s)	155, 420
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	3 cut(s)	34, 49, 155
MhlI	GDGCHC	1 cut(s)	321
MluCI	AATT	1 cut(s)	208
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	2 cut(s)	143, 160
Mph1103I	ATGCAT	1 cut(s)	185
MspA1I	CMGCKG	1 cut(s)	276
MspI	CCGG	1 cut(s)	84
MspR9I	CCNGG	2 cut(s)	215, 290
Mva1269I	GAATGC	2 cut(s)	218, 232
MvaI	CCWGG	2 cut(s)	215, 290
MwoI	GCNNNNNNNGC	2 cut(s)	170, 290
NdeII	GATC	1 cut(s)	145
NlaIII	CATG	1 cut(s)	317
NlaIV	GGNNCC	1 cut(s)	340
NmuCI	GTSAC	1 cut(s)	269
NsiI	ATGCAT	1 cut(s)	185
PctI	GAATGC	2 cut(s)	218, 232
PinAI	ACCGGT	1 cut(s)	83
PkrI	GCNGC	2 cut(s)	122, 308
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PsiI	TTATAA	1 cut(s)	366
Psp6I	CCWGG	2 cut(s)	213, 288
PspFI	CCCAGC	1 cut(s)	276
PspGI	CCWGG	2 cut(s)	213, 288
PspN4I	GGNNCC	1 cut(s)	340
PspPI	GGNCC	3 cut(s)	37, 81, 137
RsaI	GTAC	1 cut(s)	426
RsaNI	GTAC	1 cut(s)	425
SatI	GCNGC	2 cut(s)	121, 307
Sau3AI	GATC	1 cut(s)	145
Sau96I	GGNCC	3 cut(s)	37, 81, 137
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	2 cut(s)	215, 290
SduI	GDGCHC	1 cut(s)	321
SfaNI	GCATC	3 cut(s)	192, 249, 271
SinI	GGWCC	2 cut(s)	81, 137
Sse9I	AATT	1 cut(s)	208
SsiI	CCGC	4 cut(s)	32, 120, 129, 274
SspMI	CTAG	2 cut(s)	155, 420
StyD4I	CCNGG	2 cut(s)	213, 288
TaaI	ACNGT	3 cut(s)	55, 247, 394
TaqI	TCGA	1 cut(s)	412
TasI	AATT	1 cut(s)	208
TauI	GCSGC	1 cut(s)	123
TscAI	CASTG	2 cut(s)	252, 326
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	1 cut(s)	306
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	2 cut(s)	29, 49
TspRI	CASTG	2 cut(s)	252, 326
VpaK11BI	GGWCC	2 cut(s)	81, 137
XbaI	TCTAGA	1 cut(s)	154
XmiI	GTMKAC	1 cut(s)	432
XspI	CTAG	2 cut(s)	155, 420
Zsp2I	ATGCAT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.