Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000968.1

Orthogroup ID

OG0008187

Physical Location & Seq

Genomic Coordinates Forward (+)

30665 .. 32261

Gene Structure 1597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000968.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atggggaattgctgtgtaaccctcggtaactctgcccagaataagaagaagacaaagaagaagccaaatccctttgctactgattttggtgctgccaatggcaatgagggtggggacaagctgtgtgttttgaaagacccgacagggaaagacatttcggcccaatatgatctgggtagggagctcggccgtggagaatttggaatcacttacttgtgcacagatttgtcatcaggtgagaaattcgcctgcaaatcgatttcgaagaagaagctgaggactgctgtggatattgaggatgtgagacgtgaggtggacatcatgaggcatttgcctcagcaccccaacattgtgtcattgaaggacacttatgaagacgacgaggcggttcacattgtgatggagttgtgtgagggaggcgagctgtttgaccgcattgttgctaggggtcactatacggagcgtgcagctgctgctgtaatgcggacaattgttgaaattgttcagagctgtcacaagcatggagtaatgcatcgcgatctcaaaccagaaaactttctatttgcaaataagaaagaatcggctgccttaaaagcaattgattttgggttgtccgtattctttaaacctggtattgcactgcttccttctcgcatgcttatttgtgggttcctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8 Pkinase

Protein Analysis

225

Amino Acids

24.86

Weight (kDa)

8.36

Isoelectric Point (pI)

30.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12480 AT5G12480 AT5G19450 AT5G19450
fragaria_vesca	FvH4_3g28740 FvH4_3g28740 FvH4_3g28740 FvH4_3g28740
malus_domestica	MD03G1173900.v1.1 MD11G1192100.v1.1
prunus_persica	Prupe.4G250200_v2.0.a1 Prupe.4G250200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0052321
rosa_laevigata	RLG00000034825
rosa_multiflora	Rmu_sc0000968.1_g000007 Rmu_sc0028377.1_g000006
rosa_roxburghii	Rroxscaffold_1G00028230
rosa_rugosa	Rorug05G0272800 Rorug05G0272900
rosa_samantha	Rh5AG345400 Rh5CG381800 Rh5DG371600
rosa_wichuraiana	Rw5G032600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	537
AciI	CCGC	3 cut(s)	386, 433, 484
AcoI	YGGCCR	1 cut(s)	187
AcsI	RAATTY	2 cut(s)	197, 242
AdeI	CACNNNGTG	1 cut(s)	397
AgsI	TTSAA	3 cut(s)	133, 361, 497
AjiI	CACGTC	1 cut(s)	308
AjnI	CCWGG	1 cut(s)	628
AluBI	AGCT	6 cut(s)	121, 184, 274, 424, 470, 510
AluI	AGCT	6 cut(s)	121, 184, 274, 424, 470, 510
Alw21I	GWGCWC	2 cut(s)	186, 221
Alw26I	GTCTC	1 cut(s)	298
Alw44I	GTGCAC	1 cut(s)	217
AlwNI	CAGNNNCTG	1 cut(s)	473
AoxI	GGCC	2 cut(s)	159, 187
ApaLI	GTGCAC	1 cut(s)	217
ApeKI	GCWGC	5 cut(s)	92, 467, 470, 473, 584
ApoI	RAATTY	2 cut(s)	197, 242
Asp700I	GAANNNNTTC	2 cut(s)	501, 555
AspS9I	GGNCC	1 cut(s)	160
AsuHPI	GGTGA	1 cut(s)	248
AsuII	TTCGAA	1 cut(s)	263
BaeGI	GKGCMC	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	186
BbsI	GAAGAC	2 cut(s)	56, 381
Bbv12I	GWGCWC	2 cut(s)	186, 221
BbvCI	CCTCAGC	2 cut(s)	275, 336
BbvI	GCAGC	5 cut(s)	79, 457, 460, 479, 571
BccI	CCATC	1 cut(s)	394
BceAI	ACGGC	1 cut(s)	174
BciT130I	CCWGG	1 cut(s)	630
BcoDI	GTCTC	1 cut(s)	298
BfaI	CTAG	1 cut(s)	444
BisI	GCNGC	5 cut(s)	93, 468, 471, 474, 585
BlsI	GCNGC	5 cut(s)	94, 469, 472, 475, 586
Bme1390I	CCNGG	1 cut(s)	630
BmgBI	CACGTC	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	671
BmrFI	CCNGG	1 cut(s)	630
BmsI	GCATC	1 cut(s)	541
BpiI	GAAGAC	2 cut(s)	56, 381
Bpu10I	CCTNAGC	2 cut(s)	275, 336
Bpu14I	TTCGAA	1 cut(s)	263
Bsa29I	ATCGAT	1 cut(s)	257
BsaJI	CCNNGG	2 cut(s)	22, 190
Bse3DI	GCAATG	1 cut(s)	109
BseBI	CCWGG	1 cut(s)	630
BseCI	ATCGAT	1 cut(s)	257
BseDI	CCNNGG	2 cut(s)	22, 190
BseGI	GGATG	1 cut(s)	304
BseMI	GCAATG	1 cut(s)	109
BseMII	CTCAG	2 cut(s)	266, 350
BseSI	GKGCMC	1 cut(s)	221
BseX3I	CGGCCG	1 cut(s)	187
BseXI	GCAGC	5 cut(s)	79, 457, 460, 479, 571
BsgI	GTGCAG	1 cut(s)	486
Bsh1236I	CGCG	1 cut(s)	537
Bsh1285I	CGRYCG	1 cut(s)	190
BshFI	GGCC	2 cut(s)	161, 189
BshVI	ATCGAT	1 cut(s)	257
BsiEI	CGRYCG	1 cut(s)	190
BsiHKAI	GWGCWC	2 cut(s)	186, 221
BslFI	GGGAC	1 cut(s)	128
BsmAI	GTCTC	1 cut(s)	298
BsmBI	CGTCTC	1 cut(s)	298
BsmFI	GGGAC	1 cut(s)	128
BsnI	GGCC	2 cut(s)	161, 189
Bsp119I	TTCGAA	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	186, 221
Bsp143I	GATC	2 cut(s)	169, 538
Bsp68I	TCGCGA	1 cut(s)	537
BspACI	CCGC	3 cut(s)	386, 433, 484
BspANI	GGCC	2 cut(s)	161, 189
BspCNI	CTCAG	2 cut(s)	267, 349
BspDI	ATCGAT	1 cut(s)	257
BspFNI	CGCG	1 cut(s)	537
BspHI	TCATGA	1 cut(s)	321
BspLI	GGNNCC	1 cut(s)	671
BspT104I	TTCGAA	1 cut(s)	263
BsrDI	GCAATG	1 cut(s)	109
BssECI	CCNNGG	2 cut(s)	22, 190
BssMI	GATC	2 cut(s)	169, 538
Bst2UI	CCWGG	1 cut(s)	630
BstAPI	GCANNNNNTGC	1 cut(s)	473
BstBI	TTCGAA	1 cut(s)	263
BstC8I	GCNNGC	4 cut(s)	250, 422, 465, 656
BstDEI	CTNAG	2 cut(s)	275, 336
BstDSI	CCRYGG	1 cut(s)	190
BstF5I	GGATG	1 cut(s)	304
BstFNI	CGCG	1 cut(s)	537
BstKTI	GATC	2 cut(s)	172, 541
BstMAI	GTCTC	1 cut(s)	298
BstMBI	GATC	2 cut(s)	169, 538
BstMCI	CGRYCG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	2 cut(s)	473, 593
BstNI	CCWGG	1 cut(s)	630
BstNSI	RCATGY	1 cut(s)	658
BstSCI	CCNGG	1 cut(s)	628
BstSLI	GKGCMC	1 cut(s)	221
BstUI	CGCG	1 cut(s)	537
BstV1I	GCAGC	5 cut(s)	79, 457, 460, 479, 571
BstV2I	GAAGAC	2 cut(s)	56, 381
BstZI	CGGCCG	1 cut(s)	187
Bsu15I	ATCGAT	1 cut(s)	257
BsuRI	GGCC	2 cut(s)	161, 189
BsuTUI	ATCGAT	1 cut(s)	257
BtgI	CCRYGG	1 cut(s)	190
BtgZI	GCGATG	1 cut(s)	518
BtrI	CACGTC	1 cut(s)	308
BtsCI	GGATG	1 cut(s)	304
BtsI	GCAGTG	1 cut(s)	638
BtsIMutI	CAGTG	1 cut(s)	638
BtuMI	TCGCGA	1 cut(s)	537
Cac8I	GCNNGC	4 cut(s)	250, 422, 465, 656
CaiI	CAGNNNCTG	1 cut(s)	473
CciI	TCATGA	1 cut(s)	321
Cfr13I	GGNCC	1 cut(s)	160
ClaI	ATCGAT	1 cut(s)	257
CsiI	ACCWGGT	1 cut(s)	628
CspCI	CAANNNNNGTGG	2 cut(s)	91, 126
CviAII	CATG	3 cut(s)	322, 521, 655
DdeI	CTNAG	2 cut(s)	275, 336
DpnI	GATC	2 cut(s)	171, 540
DpnII	GATC	2 cut(s)	169, 538
DraI	TTTAAA	1 cut(s)	625
DraIII	CACNNNGTG	1 cut(s)	397
EaeI	YGGCCR	1 cut(s)	187
EagI	CGGCCG	1 cut(s)	187
Ecl136II	GAGCTC	1 cut(s)	184
EclXI	CGGCCG	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	186
Eco52I	CGGCCG	1 cut(s)	187
Eco53kI	GAGCTC	1 cut(s)	184
EcoICRI	GAGCTC	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	628
EcoT22I	ATGCAT	1 cut(s)	534
EcoT38I	GRGCYC	1 cut(s)	186
Esp3I	CGTCTC	1 cut(s)	298
FaeI	CATG	3 cut(s)	325, 524, 658
FaiI	YATR	6 cut(s)	168, 323, 372, 456, 522, 656
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	3 cut(s)	321, 520, 654
Fnu4HI	GCNGC	5 cut(s)	93, 468, 471, 474, 585
FokI	GGATG	1 cut(s)	311
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	5 cut(s)	93, 468, 471, 474, 585
FspBI	CTAG	1 cut(s)	444
GluI	GCNGC	5 cut(s)	93, 468, 471, 474, 585
HaeIII	GGCC	2 cut(s)	161, 189
Hin1II	CATG	3 cut(s)	325, 524, 658
HinfI	GANTC	2 cut(s)	204, 578
HphI	GGTGA	1 cut(s)	248
Hpy166II	GTNNAC	3 cut(s)	219, 316, 391
Hpy188I	TCNGA	1 cut(s)	507
Hpy188III	TCNNGA	2 cut(s)	322, 536
Hpy8I	GTNNAC	3 cut(s)	219, 316, 391
Hpy99I	CGWCG	1 cut(s)	383
HpyAV	CCTTC	2 cut(s)	355, 657
HpyCH4IV	ACGT	1 cut(s)	307
HpyCH4V	TGCA	6 cut(s)	219, 252, 467, 532, 566, 638
HpyF10VI	GCNNNNNNNGC	2 cut(s)	473, 593
HpyF3I	CTNAG	2 cut(s)	275, 336
HpySE526I	ACGT	1 cut(s)	307
Hsp92II	CATG	3 cut(s)	325, 524, 658
Kzo9I	GATC	2 cut(s)	169, 538
LmnI	GCTCC	2 cut(s)	181, 460
LpnPI	CCDG	8 cut(s)	50, 129, 158, 219, 262, 561, 615, 642
Lsp1109I	GCAGC	5 cut(s)	79, 457, 460, 479, 571
LweI	GCATC	1 cut(s)	541
MabI	ACCWGGT	1 cut(s)	628
MaeI	CTAG	1 cut(s)	444
MaeII	ACGT	1 cut(s)	307
MaeIII	GTNAC	4 cut(s)	16, 26, 449, 512
MalI	GATC	2 cut(s)	171, 540
MboI	GATC	2 cut(s)	169, 538
MboII	GAAGA	6 cut(s)	58, 61, 70, 277, 280, 386
MfeI	CAATTG	2 cut(s)	489, 597
MhlI	GDGCHC	2 cut(s)	186, 221
MluCI	AATT	6 cut(s)	7, 197, 242, 489, 498, 597
Mph1103I	ATGCAT	1 cut(s)	534
MroXI	GAANNNNTTC	2 cut(s)	501, 555
MseI	TTAA	2 cut(s)	590, 624
MslI	CAYNNNNRTG	2 cut(s)	398, 519
MspA1I	CMGCKG	1 cut(s)	470
MspR9I	CCNGG	1 cut(s)	630
MunI	CAATTG	2 cut(s)	489, 597
MvaI	CCWGG	1 cut(s)	630
MvnI	CGCG	1 cut(s)	537
MwoI	GCNNNNNNNGC	2 cut(s)	473, 593
NdeII	GATC	2 cut(s)	169, 538
NlaIII	CATG	3 cut(s)	325, 524, 658
NlaIV	GGNNCC	1 cut(s)	671
NmeAIII	GCCGAG	1 cut(s)	165
NmuCI	GTSAC	2 cut(s)	449, 512
NruI	TCGCGA	1 cut(s)	537
NsiI	ATGCAT	1 cut(s)	534
NspI	RCATGY	1 cut(s)	658
NspV	TTCGAA	1 cut(s)	263
PaeI	GCATGC	1 cut(s)	658
PagI	TCATGA	1 cut(s)	321
PdmI	GAANNNNTTC	2 cut(s)	501, 555
PfeI	GAWTC	2 cut(s)	204, 578
PkrI	GCNGC	5 cut(s)	94, 469, 472, 475, 586
Psp124BI	GAGCTC	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	628
PspGI	CCWGG	1 cut(s)	628
PspN4I	GGNNCC	1 cut(s)	671
PspPI	GGNCC	1 cut(s)	160
PstNI	CAGNNNCTG	1 cut(s)	473
PvuII	CAGCTG	1 cut(s)	470
RruI	TCGCGA	1 cut(s)	537
RseI	CAYNNNNRTG	2 cut(s)	398, 519
SacI	GAGCTC	1 cut(s)	186
SaqAI	TTAA	2 cut(s)	590, 624
SatI	GCNGC	5 cut(s)	93, 468, 471, 474, 585
Sau3AI	GATC	2 cut(s)	169, 538
Sau96I	GGNCC	1 cut(s)	160
ScrFI	CCNGG	1 cut(s)	630
SduI	GDGCHC	2 cut(s)	186, 221
SexAI	ACCWGGT	1 cut(s)	628
SfaNI	GCATC	1 cut(s)	541
SfuI	TTCGAA	1 cut(s)	263
SmiMI	CAYNNNNRTG	2 cut(s)	398, 519
SphI	GCATGC	1 cut(s)	658
Sse9I	AATT	6 cut(s)	7, 197, 242, 489, 498, 597
SsiI	CCGC	3 cut(s)	386, 433, 484
SspMI	CTAG	1 cut(s)	444
SstI	GAGCTC	1 cut(s)	186
StyD4I	CCNGG	1 cut(s)	628
TaiI	ACGT	1 cut(s)	310
TaqI	TCGA	2 cut(s)	257, 263
TasI	AATT	6 cut(s)	7, 197, 242, 489, 498, 597
TfiI	GAWTC	2 cut(s)	204, 578
Tru1I	TTAA	2 cut(s)	590, 624
Tru9I	TTAA	2 cut(s)	590, 624
TscAI	CASTG	1 cut(s)	645
TseFI	GTSAC	2 cut(s)	449, 512
TseI	GCWGC	5 cut(s)	92, 467, 470, 473, 584
Tsp45I	GTSAC	2 cut(s)	449, 512
TspDTI	ATGAA	1 cut(s)	387
TspGWI	ACGGA	2 cut(s)	473, 604
TspRI	CASTG	1 cut(s)	645
VneI	GTGCAC	1 cut(s)	217
XapI	RAATTY	2 cut(s)	197, 242
XceI	RCATGY	1 cut(s)	658
XmnI	GAANNNNTTC	2 cut(s)	501, 555
XspI	CTAG	1 cut(s)	444
Zsp2I	ATGCAT	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.