Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0008187

Physical Location & Seq

Genomic Coordinates Reverse (-)

56946097 .. 56950562

Gene Structure 4466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG345400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGAGGCATTTGCCTCAGCACCCCAACATTGTGTTATTGAAGGACACTTATGAGGACGACGAGGCGGTTCACATTGTGATGGAGTTGTGTGAGGGGGGCGAGCTGTTTGACCGCATTGTTGCTCGGGGTCACTATACGGAGCGTGCAGCTGCTGCTGTAATGCGGACAATTGTTGAAATTGTTCAGGTGCCATATGCAGAGGAGCAATTTAATGAGATAGTCGGAAGTCCGTACTACATGGCTCCAGAGGTTCTGAAGCGCAATTATGGTCCCGAGGTTGACATCTGGAGTGCTGGAGCTGATGTTGATGGCGATGGAGCTCTGAATTATGGAGAGTTTGTTGCGGTTTCGGTTCACCTTAAAAAGATGGCCAATGATGAGCACCTACATAAAGCTTTTGCATTCTTCGATCAAAACCAAAGTGGTTACATAGAAATTGAAGAGTTGCGAAATGCTTTAAATGATGATGTTGATGCAGGCGGCGAGGAAGTTATCCATGCAATTATGCATGATGTGGATACAGATAAGGATGGGCGAATAAGTTATGAGGAGTTTGTCGCTATGATGAAGTCTGGTACAGATTGGAGAAAAGCATCCAGACAATATTCACGGGAAAGATTCAACAGCATAAGCTTGAAGTTGATGCGTGAAGGGTCTTTACAGTTAACCAATGAGGGTGCCGCCCCTCCAGGTCCAGGTGCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8 Pkinase

Protein Analysis

235

Amino Acids

26.33

Weight (kDa)

4.73

Isoelectric Point (pI)

41.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 62	2e-10	Protein kinase domain
Pkinase	PF00069	68 - 99	2.6e-07	Protein kinase domain
EF-hand_7	PF13499	127 - 190	3.2e-16	EF-hand domain pair
EF-hand_1	PF00036	129 - 154	4.6e-06	EF hand domain
EF-hand_6	PF13405	129 - 154	2.7e-06	EF-hand domain
EF-hand_1	PF00036	165 - 191	6.2e-08	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12480 AT5G12480 AT5G19450 AT5G19450
fragaria_vesca	FvH4_3g28740 FvH4_3g28740 FvH4_3g28740 FvH4_3g28740
malus_domestica	MD03G1173900.v1.1 MD11G1192100.v1.1
prunus_persica	Prupe.4G250200_v2.0.a1 Prupe.4G250200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0052321
rosa_laevigata	RLG00000034825
rosa_multiflora	Rmu_sc0000968.1_g000007 Rmu_sc0028377.1_g000006
rosa_roxburghii	Rroxscaffold_1G00028230
rosa_rugosa	Rorug05G0272800 Rorug05G0272900
rosa_samantha	Rh5AG345400 Rh5CG381800 Rh5DG371600
rosa_wichuraiana	Rw5G032600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	187, 677
AciI	CCGC	6 cut(s)	65, 112, 163, 344, 480, 681
AcoI	YGGCCR	1 cut(s)	369
AcuI	CTGAAG	1 cut(s)	275
AdeI	CACNNNGTG	1 cut(s)	76
AfaI	GTAC	2 cut(s)	233, 577
AfiI	CCNNNNNNNGG	1 cut(s)	695
AgsI	TTSAA	5 cut(s)	40, 176, 440, 622, 637
AjnI	CCWGG	2 cut(s)	688, 694
AluBI	AGCT	6 cut(s)	103, 149, 299, 320, 395, 633
AluI	AGCT	6 cut(s)	103, 149, 299, 320, 395, 633
Alw21I	GWGCWC	2 cut(s)	322, 384
AlwNI	CAGNNNCTG	2 cut(s)	152, 701
Ama87I	CYCGRG	2 cut(s)	123, 272
AoxI	GGCC	1 cut(s)	369
ApeKI	GCWGC	4 cut(s)	146, 149, 152, 701
Asp700I	GAANNNNTTC	1 cut(s)	180
AspLEI	GCGC	1 cut(s)	261
AspS9I	GGNCC	2 cut(s)	269, 692
AsuHPI	GGTGA	1 cut(s)	347
AvaI	CYCGRG	2 cut(s)	123, 272
AvaII	GGWCC	2 cut(s)	269, 692
BalI	TGGCCA	1 cut(s)	371
BanI	GGYRCC	2 cut(s)	187, 677
BanII	GRGCYC	1 cut(s)	322
BarI	GAAGNNNNNNTAC	2 cut(s)	642, 674
Bbv12I	GWGCWC	2 cut(s)	322, 384
BbvCI	CCTCAGC	1 cut(s)	15
BbvI	GCAGC	4 cut(s)	136, 139, 158, 688
BccI	CCATC	5 cut(s)	73, 302, 308, 361, 524
BciT130I	CCWGG	2 cut(s)	690, 696
BciVI	GTATCC	1 cut(s)	511
BfuI	GTATCC	1 cut(s)	511
BisI	GCNGC	6 cut(s)	147, 150, 153, 481, 681, 702
BlsI	GCNGC	6 cut(s)	148, 151, 154, 482, 682, 703
Bme1390I	CCNGG	2 cut(s)	690, 696
Bme18I	GGWCC	2 cut(s)	269, 692
BmeT110I	CYCGRG	2 cut(s)	123, 272
BmgT120I	GGNCC	2 cut(s)	269, 692
BmiI	GGNNCC	4 cut(s)	189, 243, 271, 679
BmrFI	CCNGG	2 cut(s)	690, 696
BmsI	GCATC	3 cut(s)	463, 602, 633
BpmI	CTGGAG	4 cut(s)	228, 307, 315, 672
Bpu10I	CCTNAGC	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	273
BsaXI	ACNNNNNCTCC	4 cut(s)	288, 318, 324, 354
Bsc4I	CCNNNNNNNGG	1 cut(s)	695
BseBI	CCWGG	2 cut(s)	690, 696
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	2 cut(s)	535, 593
BseLI	CCNNNNNNNGG	1 cut(s)	695
BseMII	CTCAG	1 cut(s)	29
BseRI	GAGGAG	2 cut(s)	215, 563
BseXI	GCAGC	4 cut(s)	136, 139, 158, 688
BsgI	GTGCAG	1 cut(s)	165
BshFI	GGCC	1 cut(s)	371
BshNI	GGYRCC	2 cut(s)	187, 677
BsiHKAI	GWGCWC	2 cut(s)	322, 384
BsiHKCI	CYCGRG	2 cut(s)	123, 272
BslFI	GGGAC	1 cut(s)	255
BslI	CCNNNNNNNGG	1 cut(s)	695
BsmFI	GGGAC	1 cut(s)	255
BsmI	GAATGC	1 cut(s)	401
BsnI	GGCC	1 cut(s)	371
BsoBI	CYCGRG	2 cut(s)	123, 272
Bsp1286I	GDGCHC	2 cut(s)	322, 384
Bsp143I	GATC	1 cut(s)	409
BspACI	CCGC	6 cut(s)	65, 112, 163, 344, 480, 681
BspANI	GGCC	1 cut(s)	371
BspCNI	CTCAG	1 cut(s)	28
BspLI	GGNNCC	4 cut(s)	189, 243, 271, 679
BspT107I	GGYRCC	2 cut(s)	187, 677
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	1 cut(s)	409
Bst2UI	CCWGG	2 cut(s)	690, 696
Bst4CI	ACNGT	1 cut(s)	663
Bst6I	CTCTTC	1 cut(s)	435
BstAPI	GCANNNNNTGC	1 cut(s)	152
BstC8I	GCNNGC	3 cut(s)	101, 144, 478
BstDEI	CTNAG	1 cut(s)	15
BstF5I	GGATG	2 cut(s)	535, 593
BstHHI	GCGC	1 cut(s)	261
BstKTI	GATC	1 cut(s)	412
BstMBI	GATC	1 cut(s)	409
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstNI	CCWGG	2 cut(s)	690, 696
BstSCI	CCNGG	2 cut(s)	688, 694
BstV1I	GCAGC	4 cut(s)	136, 139, 158, 688
BsuI	GTATCC	1 cut(s)	511
BsuRI	GGCC	1 cut(s)	371
BtgZI	GCGATG	1 cut(s)	327
BtsCI	GGATG	2 cut(s)	535, 593
Cac8I	GCNNGC	3 cut(s)	101, 144, 478
CaiI	CAGNNNCTG	2 cut(s)	152, 701
CfoI	GCGC	1 cut(s)	261
Cfr13I	GGNCC	2 cut(s)	269, 692
Csp6I	GTAC	2 cut(s)	232, 576
CviAII	CATG	4 cut(s)	238, 497, 509, 705
CviJI	RGCY	8 cut(s)	103, 149, 242, 299, 320, 371, 395, 633
CviKI_1	RGCY	8 cut(s)	103, 149, 242, 299, 320, 371, 395, 633
CviQI	GTAC	2 cut(s)	232, 576
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	1 cut(s)	411
DpnII	GATC	1 cut(s)	409
DraI	TTTAAA	1 cut(s)	459
DraIII	CACNNNGTG	1 cut(s)	76
EaeI	YGGCCR	1 cut(s)	369
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
Ecl136II	GAGCTC	1 cut(s)	320
Eco24I	GRGCYC	1 cut(s)	322
Eco47I	GGWCC	2 cut(s)	269, 692
Eco53kI	GAGCTC	1 cut(s)	320
Eco57I	CTGAAG	1 cut(s)	275
Eco88I	CYCGRG	2 cut(s)	123, 272
EcoICRI	GAGCTC	1 cut(s)	320
EcoRII	CCWGG	2 cut(s)	688, 694
EcoT22I	ATGCAT	1 cut(s)	510
EcoT38I	GRGCYC	1 cut(s)	322
FaeI	CATG	4 cut(s)	241, 500, 512, 708
FaqI	GGGAC	1 cut(s)	255
FatI	CATG	4 cut(s)	237, 496, 508, 704
FauNDI	CATATG	1 cut(s)	193
Fnu4HI	GCNGC	6 cut(s)	147, 150, 153, 481, 681, 702
FokI	GGATG	2 cut(s)	542, 580
FriOI	GRGCYC	1 cut(s)	322
Fsp4HI	GCNGC	6 cut(s)	147, 150, 153, 481, 681, 702
GlaI	GCGC	1 cut(s)	260
GluI	GCNGC	6 cut(s)	147, 150, 153, 481, 681, 702
GsuI	CTGGAG	4 cut(s)	228, 307, 315, 672
HaeIII	GGCC	1 cut(s)	371
HhaI	GCGC	1 cut(s)	261
Hin1II	CATG	4 cut(s)	241, 500, 512, 708
Hin6I	GCGC	1 cut(s)	259
HinP1I	GCGC	1 cut(s)	259
HincII	GTYRAC	2 cut(s)	280, 666
HindII	GTYRAC	2 cut(s)	280, 666
HindIII	AAGCTT	2 cut(s)	393, 631
HinfI	GANTC	1 cut(s)	618
HpaI	GTTAAC	1 cut(s)	666
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	4 cut(s)	70, 280, 355, 666
Hpy188I	TCNGA	3 cut(s)	224, 255, 324
Hpy188III	TCNNGA	4 cut(s)	245, 272, 286, 597
Hpy8I	GTNNAC	4 cut(s)	70, 280, 355, 666
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	2 cut(s)	34, 644
HpyCH4III	ACNGT	1 cut(s)	663
HpyCH4V	TGCA	7 cut(s)	146, 197, 401, 476, 500, 508, 704
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	1 cut(s)	15
Hsp92II	CATG	4 cut(s)	241, 500, 512, 708
HspAI	GCGC	1 cut(s)	259
KspAI	GTTAAC	1 cut(s)	666
Kzo9I	GATC	1 cut(s)	409
LmnI	GCTCC	5 cut(s)	139, 202, 247, 296, 317
Lsp1109I	GCAGC	4 cut(s)	136, 139, 158, 688
LweI	GCATC	3 cut(s)	463, 602, 633
MaeIII	GTNAC	2 cut(s)	128, 425
MalI	GATC	1 cut(s)	411
MboI	GATC	1 cut(s)	409
MboII	GAAGA	2 cut(s)	397, 452
MfeI	CAATTG	1 cut(s)	168
MhlI	GDGCHC	2 cut(s)	322, 384
MlsI	TGGCCA	1 cut(s)	371
MluCI	AATT	7 cut(s)	168, 177, 206, 262, 325, 435, 501
MluNI	TGGCCA	1 cut(s)	371
MmeI	TCCRAC	1 cut(s)	202
Mox20I	TGGCCA	1 cut(s)	371
Mph1103I	ATGCAT	1 cut(s)	510
MroXI	GAANNNNTTC	1 cut(s)	180
MscI	TGGCCA	1 cut(s)	371
MseI	TTAA	4 cut(s)	210, 360, 458, 665
MslI	CAYNNNNRTG	1 cut(s)	77
Msp20I	TGGCCA	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	149
MspR9I	CCNGG	2 cut(s)	690, 696
MunI	CAATTG	1 cut(s)	168
Mva1269I	GAATGC	1 cut(s)	401
MvaI	CCWGG	2 cut(s)	690, 696
MwoI	GCNNNNNNNGC	1 cut(s)	152
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	1 cut(s)	409
NlaIII	CATG	4 cut(s)	241, 500, 512, 708
NlaIV	GGNNCC	4 cut(s)	189, 243, 271, 679
NmuCI	GTSAC	1 cut(s)	128
NsiI	ATGCAT	1 cut(s)	510
PctI	GAATGC	1 cut(s)	401
PdmI	GAANNNNTTC	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	618
PkrI	GCNGC	6 cut(s)	148, 151, 154, 482, 682, 703
Psp124BI	GAGCTC	1 cut(s)	322
Psp6I	CCWGG	2 cut(s)	688, 694
PspGI	CCWGG	2 cut(s)	688, 694
PspN4I	GGNNCC	4 cut(s)	189, 243, 271, 679
PspPI	GGNCC	2 cut(s)	269, 692
PstNI	CAGNNNCTG	2 cut(s)	152, 701
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	2 cut(s)	233, 577
RsaNI	GTAC	2 cut(s)	232, 576
RseI	CAYNNNNRTG	1 cut(s)	77
SacI	GAGCTC	1 cut(s)	322
SaqAI	TTAA	4 cut(s)	210, 360, 458, 665
SatI	GCNGC	6 cut(s)	147, 150, 153, 481, 681, 702
Sau3AI	GATC	1 cut(s)	409
Sau96I	GGNCC	2 cut(s)	269, 692
ScrFI	CCNGG	2 cut(s)	690, 696
SduI	GDGCHC	2 cut(s)	322, 384
SfaNI	GCATC	3 cut(s)	463, 602, 633
SinI	GGWCC	2 cut(s)	269, 692
SmiMI	CAYNNNNRTG	1 cut(s)	77
Sse9I	AATT	7 cut(s)	168, 177, 206, 262, 325, 435, 501
SsiI	CCGC	6 cut(s)	65, 112, 163, 344, 480, 681
SspI	AATATT	1 cut(s)	605
SstI	GAGCTC	1 cut(s)	322
StyD4I	CCNGG	2 cut(s)	688, 694
TaaI	ACNGT	1 cut(s)	663
TaqI	TCGA	1 cut(s)	408
TasI	AATT	7 cut(s)	168, 177, 206, 262, 325, 435, 501
TauI	GCSGC	2 cut(s)	483, 683
TfiI	GAWTC	1 cut(s)	618
Tru1I	TTAA	4 cut(s)	210, 360, 458, 665
Tru9I	TTAA	4 cut(s)	210, 360, 458, 665
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	4 cut(s)	146, 149, 152, 701
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	1 cut(s)	581
TspGWI	ACGGA	2 cut(s)	152, 219
VpaK11BI	GGWCC	2 cut(s)	269, 692
XmnI	GAANNNNTTC	1 cut(s)	180
Zsp2I	ATGCAT	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.