Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016095

Physical Location & Seq

Genomic Coordinates Forward (+)

4341262 .. 4342095

Gene Structure 834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G13510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGAAGTGGCTCTTCTCTCCTTCTCTTCTTCCTTGTCTCCTCTCTGTCACCAGCGAATCTCAACTCTCACACCCAAAACCTCGAATTCCCCAAATTACCCTCGCCTCCCGGTCATCAGATCCGCGGTGTCTCGTAACAAGAAGGAAGAGACTGTCGAAGCCGTCAAGTCTCACTTGGAGAACTGCCATCTCCTCGCCGCCATCAACTACAAAGGCCTCACCGTCAAGCAGTTTCAAGACCTCCGGAGAACTCTCCCCGACACTACAAAGCTCATCGTCGCCAAGAACACTTTGGTCTTCAAAGCCATTGAAGGCACCAAATGGGAAGCTCTCAAGCCTTGTATGAAAGGCATGAACGCTTGGCTTTTCGTCCAGACCGATGAAATCCCTTCTGCTATCAAACCCTACCGGAGCTTCCAGAAGGAACGCAAGCTTGAAAACAATGACTTTGCCGGCGCTGTCTTCGAAGGTAAGTTCTACGCTCCTGACAATTTCAAAGTCCTCGAGACCATGCCCACTCGTGCTGAGGTCTACGCTAAGATGCTCGGTGCTCTGCAATCTCCGGCTATTAATCTCGTCACTACTTTACAAGCACCAGCAAGAGAGGTTATAATGGTGCTTATGGCTTACATTAAGAAGTTGGAAGATGAGAGTAATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022626 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L10

Protein Analysis

220

Amino Acids

24.74

Weight (kDa)

9.36

Isoelectric Point (pI)

47.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L10	PF00466	45 - 135	6.5e-20	Ribosomal protein L10

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13510
fragaria_vesca	FvH4_2g21340
malus_domestica	MD05G1196100.v1.1 MD10G1183400.v1.1
prunus_persica	Prupe.8G222500_v2.0.a1
pyrus_communis	pycom05g18310 pycom10g15840
rosa_chinensis	RchiOBHm_Chr6g0287931
rosa_laevigata	RLG00000012455
rosa_multiflora	Rmu_sc0000042.1_g000003
rosa_roxburghii	Rroxscaffold_7G00180660
rosa_rugosa	Rorug06G0193500
rosa_samantha	Rh6CG300800 Rh6DG301400
rosa_wichuraiana	Rw6G026170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	611
AccB1I	GGYRCC	1 cut(s)	314
AccI	GTMKAC	1 cut(s)	531
AccII	CGCG	1 cut(s)	125
AccIII	TCCGGA	1 cut(s)	243
AciI	CCGC	3 cut(s)	123, 125, 198
AclWI	GGATC	1 cut(s)	114
AcsI	RAATTY	1 cut(s)	85
AgsI	TTSAA	5 cut(s)	236, 301, 311, 437, 496
AluBI	AGCT	4 cut(s)	271, 329, 414, 433
AluI	AGCT	4 cut(s)	271, 329, 414, 433
Alw21I	GWGCWC	1 cut(s)	553
Alw26I	GTCTC	5 cut(s)	42, 135, 143, 174, 500
AlwI	GGATC	1 cut(s)	114
Ama87I	CYCGRG	1 cut(s)	503
Aor13HI	TCCGGA	1 cut(s)	243
AoxI	GGCC	1 cut(s)	214
ApoI	RAATTY	1 cut(s)	85
AseI	ATTAAT	1 cut(s)	570
AspLEI	GCGC	1 cut(s)	458
AsuC2I	CCSGG	1 cut(s)	110
AsuHPI	GGTGA	2 cut(s)	41, 211
AsuII	TTCGAA	1 cut(s)	465
AvaI	CYCGRG	1 cut(s)	503
BanI	GGYRCC	1 cut(s)	314
BauI	CACGAG	1 cut(s)	519
BbsI	GAAGAC	2 cut(s)	289, 454
Bbv12I	GWGCWC	1 cut(s)	553
BbvCI	CCTCAGC	1 cut(s)	525
BccI	CCATC	2 cut(s)	195, 209
BceAI	ACGGC	1 cut(s)	146
BcnI	CCSGG	1 cut(s)	110
BcoDI	GTCTC	5 cut(s)	42, 135, 143, 174, 500
BfoI	RGCGCY	1 cut(s)	459
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme1390I	CCNGG	1 cut(s)	110
BmeT110I	CYCGRG	1 cut(s)	503
BmiI	GGNNCC	1 cut(s)	316
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	1 cut(s)	531
BpiI	GAAGAC	2 cut(s)	289, 454
Bpu10I	CCTNAGC	1 cut(s)	525
Bpu14I	TTCGAA	1 cut(s)	465
BpuEI	CTTGAG	1 cut(s)	317
BpuMI	CCSGG	1 cut(s)	110
BsaI	GGTCTC	1 cut(s)	500
BsaJI	CCNNGG	1 cut(s)	123
BsaWI	WCCGGW	2 cut(s)	243, 408
Bse118I	RCCGGY	1 cut(s)	452
BseAI	TCCGGA	1 cut(s)	243
BseDI	CCNNGG	1 cut(s)	123
BseMII	CTCAG	1 cut(s)	516
BseRI	GAGGAG	2 cut(s)	30, 182
Bsh1236I	CGCG	1 cut(s)	125
BshFI	GGCC	1 cut(s)	216
BshNI	GGYRCC	1 cut(s)	314
BsiHKAI	GWGCWC	1 cut(s)	553
BsiHKCI	CYCGRG	1 cut(s)	503
BsiSI	CCGG	5 cut(s)	110, 244, 409, 453, 563
BsmAI	GTCTC	5 cut(s)	42, 135, 143, 174, 500
BsnI	GGCC	1 cut(s)	216
Bso31I	GGTCTC	1 cut(s)	500
BsoBI	CYCGRG	1 cut(s)	503
Bsp119I	TTCGAA	1 cut(s)	465
Bsp1286I	GDGCHC	1 cut(s)	553
Bsp13I	TCCGGA	1 cut(s)	243
Bsp143I	GATC	1 cut(s)	119
BspACI	CCGC	3 cut(s)	123, 125, 198
BspANI	GGCC	1 cut(s)	216
BspCNI	CTCAG	1 cut(s)	517
BspEI	TCCGGA	1 cut(s)	243
BspFNI	CGCG	1 cut(s)	125
BspLI	GGNNCC	1 cut(s)	316
BspPI	GGATC	1 cut(s)	114
BspQI	GCTCTTC	1 cut(s)	18
BspT104I	TTCGAA	1 cut(s)	465
BspT107I	GGYRCC	1 cut(s)	314
BspTNI	GGTCTC	1 cut(s)	500
BsrFI	RCCGGY	1 cut(s)	452
BssAI	RCCGGY	1 cut(s)	452
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	1 cut(s)	119
BssSI	CACGAG	1 cut(s)	519
Bst2BI	CACGAG	1 cut(s)	519
Bst4CI	ACNGT	2 cut(s)	154, 223
Bst6I	CTCTTC	3 cut(s)	18, 31, 141
BstBI	TTCGAA	1 cut(s)	465
BstC8I	GCNNGC	2 cut(s)	431, 454
BstDEI	CTNAG	2 cut(s)	525, 537
BstDSI	CCRYGG	1 cut(s)	123
BstFNI	CGCG	1 cut(s)	125
BstH2I	RGCGCY	1 cut(s)	459
BstHHI	GCGC	1 cut(s)	458
BstKTI	GATC	1 cut(s)	122
BstMAI	GTCTC	5 cut(s)	42, 135, 143, 174, 500
BstMBI	GATC	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	108
BstUI	CGCG	1 cut(s)	125
BstV2I	GAAGAC	2 cut(s)	289, 454
BstX2I	RGATCY	1 cut(s)	119
BstYI	RGATCY	1 cut(s)	119
BsuRI	GGCC	1 cut(s)	216
BtgI	CCRYGG	1 cut(s)	123
Cac8I	GCNNGC	2 cut(s)	431, 454
CfoI	GCGC	1 cut(s)	458
Cfr10I	RCCGGY	1 cut(s)	452
Cfr42I	CCGCGG	1 cut(s)	126
CviAII	CATG	2 cut(s)	352, 511
DdeI	CTNAG	2 cut(s)	525, 537
DpnI	GATC	1 cut(s)	121
DpnII	GATC	1 cut(s)	119
Eam1104I	CTCTTC	3 cut(s)	18, 31, 141
EarI	CTCTTC	3 cut(s)	18, 31, 141
Eco147I	AGGCCT	1 cut(s)	216
Eco31I	GGTCTC	1 cut(s)	500
Eco88I	CYCGRG	1 cut(s)	503
EcoRI	GAATTC	1 cut(s)	85
EcoT22I	ATGCAT	1 cut(s)	661
FaeI	CATG	2 cut(s)	355, 514
FaiI	YATR	6 cut(s)	344, 353, 512, 611, 623, 661
FalI	AAGNNNNNCTT	3 cut(s)	29, 158, 190
FatI	CATG	2 cut(s)	351, 510
FblI	GTMKAC	1 cut(s)	531
Fnu4HI	GCNGC	1 cut(s)	198
Fsp4HI	GCNGC	1 cut(s)	198
GlaI	GCGC	1 cut(s)	457
GluI	GCNGC	1 cut(s)	198
HaeII	RGCGCY	1 cut(s)	459
HaeIII	GGCC	1 cut(s)	216
HapII	CCGG	5 cut(s)	110, 244, 409, 453, 563
HhaI	GCGC	1 cut(s)	458
Hin1II	CATG	2 cut(s)	355, 514
Hin6I	GCGC	1 cut(s)	456
HinP1I	GCGC	1 cut(s)	456
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	1 cut(s)	57
HpaII	CCGG	5 cut(s)	110, 244, 409, 453, 563
HphI	GGTGA	2 cut(s)	41, 211
Hpy166II	GTNNAC	1 cut(s)	532
Hpy188I	TCNGA	1 cut(s)	119
Hpy188III	TCNNGA	6 cut(s)	236, 244, 373, 418, 485, 505
Hpy8I	GTNNAC	1 cut(s)	532
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	6 cut(s)	31, 136, 305, 399, 415, 461
HpyCH4III	ACNGT	2 cut(s)	154, 223
HpyCH4V	TGCA	2 cut(s)	556, 659
HpyF3I	CTNAG	2 cut(s)	525, 537
Hsp92II	CATG	2 cut(s)	355, 514
HspAI	GCGC	1 cut(s)	456
Kpn2I	TCCGGA	1 cut(s)	243
KroI	GCCGGC	1 cut(s)	452
KroNI	GCCGGC	1 cut(s)	454
KspI	CCGCGG	1 cut(s)	126
Kzo9I	GATC	1 cut(s)	119
LguI	GCTCTTC	1 cut(s)	18
LmnI	GCTCC	2 cut(s)	411, 487
LweI	GCATC	1 cut(s)	531
MaeIII	GTNAC	3 cut(s)	47, 134, 577
MalI	GATC	1 cut(s)	121
MboI	GATC	1 cut(s)	119
MboII	GAAGA	7 cut(s)	5, 18, 21, 158, 289, 454, 656
MflI	RGATCY	1 cut(s)	119
MhlI	GDGCHC	1 cut(s)	553
MluCI	AATT	3 cut(s)	85, 94, 490
MmeI	TCCRAC	1 cut(s)	621
Mph1103I	ATGCAT	1 cut(s)	661
MroI	TCCGGA	1 cut(s)	243
MroNI	GCCGGC	1 cut(s)	452
MseI	TTAA	2 cut(s)	570, 633
MspA1I	CMGCKG	1 cut(s)	125
MspI	CCGG	5 cut(s)	110, 244, 409, 453, 563
MspR9I	CCNGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	125
NaeI	GCCGGC	1 cut(s)	454
NciI	CCSGG	1 cut(s)	110
NdeII	GATC	1 cut(s)	119
NgoMIV	GCCGGC	1 cut(s)	452
NlaIII	CATG	2 cut(s)	355, 514
NlaIV	GGNNCC	1 cut(s)	316
NmuCI	GTSAC	2 cut(s)	47, 577
NsiI	ATGCAT	1 cut(s)	661
NspV	TTCGAA	1 cut(s)	465
PaeR7I	CTCGAG	1 cut(s)	503
PceI	AGGCCT	1 cut(s)	216
PciSI	GCTCTTC	1 cut(s)	18
PcsI	WCGNNNNNNNCGW	1 cut(s)	375
PdiI	GCCGGC	1 cut(s)	454
PfeI	GAWTC	1 cut(s)	57
PkrI	GCNGC	1 cut(s)	199
PshBI	ATTAAT	1 cut(s)	570
PsiI	TTATAA	1 cut(s)	611
PspN4I	GGNNCC	1 cut(s)	316
PsuI	RGATCY	1 cut(s)	119
SacII	CCGCGG	1 cut(s)	126
SapI	GCTCTTC	1 cut(s)	18
SaqAI	TTAA	2 cut(s)	570, 633
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	553
SetI	ASST	9 cut(s)	83, 243, 273, 331, 416, 435, 472, 531, 609
SfaNI	GCATC	1 cut(s)	531
Sfr274I	CTCGAG	1 cut(s)	503
Sfr303I	CCGCGG	1 cut(s)	126
SfuI	TTCGAA	1 cut(s)	465
SgrBI	CCGCGG	1 cut(s)	126
SlaI	CTCGAG	1 cut(s)	503
SmlI	CTYRAG	2 cut(s)	332, 503
SmoI	CTYRAG	2 cut(s)	332, 503
Sse9I	AATT	3 cut(s)	85, 94, 490
SseBI	AGGCCT	1 cut(s)	216
SsiI	CCGC	3 cut(s)	123, 125, 198
StuI	AGGCCT	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	108
TaaI	ACNGT	2 cut(s)	154, 223
TaqI	TCGA	4 cut(s)	83, 156, 465, 504
TaqII	GACCGA	1 cut(s)	392
TasI	AATT	3 cut(s)	85, 94, 490
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	1 cut(s)	57
Tru1I	TTAA	2 cut(s)	570, 633
Tru9I	TTAA	2 cut(s)	570, 633
TseFI	GTSAC	2 cut(s)	47, 577
Tsp45I	GTSAC	2 cut(s)	47, 577
TspDTI	ATGAA	3 cut(s)	359, 368, 396
VspI	ATTAAT	1 cut(s)	570
XapI	RAATTY	1 cut(s)	85
XcmI	CCANNNNNNNNNTGG	1 cut(s)	289
XhoI	CTCGAG	1 cut(s)	503
XmiI	GTMKAC	1 cut(s)	531
Zsp2I	ATGCAT	1 cut(s)	661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.