RLG00000012455

50S ribosomal protein L10

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0016095
Physical Location & Seq
Forward (+)
18951505 .. 18952176
672 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012455

Sequence Viewer

Length: 672 bp
ATGGAAGCCACTCTGTTCACCTCGACGCCCCCATCCCCGGCCTTATCCCTAACCCGACCCGCCAACCCATTCCTCTCCCTCCCCTCCCCTCCCCACCGCCGCGGCCTCCGCCTCCCCACCATCCGCTCCGCCATCTCCCGCACCAAGAAAGAAGAGACCGTCGAAACCATCAAGACCAATCTCGACAACTGCTACCTCATGGCCGGTATCAGCTACAAAGGCCTCACCGTCAAGCAATTCCAGGACCTCCGCAAAGCCCTACCCGAATCCACCAAGCTCATCGTCGCCAAGAACACTCTCGTCTACAAAGCCATCGAGGGAACCCCCTGGGAGGCTCTCAAGCCTTGCATGACCGGAATGAACGCCTGGCTTTTCGTCCACAGCGAGGAGATCCCGCCGGCTATTAAGCCCTACCGGGATTTCCAGAAGGAACGGAAGCTCGAGAACAATGACTTCACCGGAGCGGTGTTCGAGGGGAAGTTTTACGGCCCCGGAGACTTCAAGGCGCTGGAGACAATGCCGACGAGGCTGGAGATTTATGCCAAGTTGCTTGGCTCCCTCAAGGGGCCGGCGTCCAACGTCGTCGGGACGATTCAGGCGCCGGCGAGGGAGCTGGTCATGACTTTGCAGGCGTATGTGCGGAAATTGGAGGAGAGCGGCGGCGGGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L10

Protein Analysis

224

Amino Acids

24.74

Weight (kDa)

9.45

Isoelectric Point (pI)

43.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L10 PF00466 47 - 141 5.6e-20 Ribosomal protein L10
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016095)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13510
fragaria_vesca FvH4_2g21340
malus_domestica MD05G1196100.v1.1 MD10G1183400.v1.1
prunus_persica Prupe.8G222500_v2.0.a1
pyrus_communis pycom05g18310 pycom10g15840
rosa_chinensis RchiOBHm_Chr6g0287931
rosa_laevigata RLG00000012455
rosa_multiflora Rmu_sc0000042.1_g000003
rosa_roxburghii Rroxscaffold_7G00180660
rosa_rugosa Rorug06G0193500
rosa_samantha Rh6CG300800 Rh6DG301400
rosa_wichuraiana Rw6G026170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 598
AccBSI CCGCTC 3 cut(s) 126, 464, 657
AccI GTMKAC 1 cut(s) 303
AccII CGCG 1 cut(s) 102
AclWI GGATC 1 cut(s) 385
AcoI YGGCCR 1 cut(s) 201
AcyI GRCGYC 3 cut(s) 26, 572, 599
AfiI CCNNNNNNNGG 4 cut(s) 37, 331, 385, 564
AgsI TTSAA 1 cut(s) 502
AjnI CCWGG 3 cut(s) 240, 326, 365
AluBI AGCT 4 cut(s) 213, 277, 439, 613
AluI AGCT 4 cut(s) 213, 277, 439, 613
Alw26I GTCTC 3 cut(s) 149, 489, 506
AlwI GGATC 1 cut(s) 385
Ama87I CYCGRG 1 cut(s) 440
AoxI GGCC 6 cut(s) 39, 103, 201, 220, 487, 566
AspLEI GCGC 2 cut(s) 508, 601
AspS9I GGNCC 3 cut(s) 244, 488, 566
AsuC2I CCSGG 3 cut(s) 38, 416, 492
AsuHPI GGTGA 3 cut(s) 10, 217, 448
AvaI CYCGRG 1 cut(s) 440
AvaII GGWCC 1 cut(s) 244
BanI GGYRCC 1 cut(s) 598
BccI CCATC 5 cut(s) 40, 128, 140, 176, 320
BceAI ACGGC 1 cut(s) 502
BciT130I CCWGG 3 cut(s) 242, 328, 367
BcnI CCSGG 3 cut(s) 38, 416, 492
BcoDI GTCTC 3 cut(s) 149, 489, 506
BfoI RGCGCY 2 cut(s) 509, 602
BglI GCCNNNNNGGC 1 cut(s) 526
BisI GCNGC 4 cut(s) 100, 103, 658, 661
BlsI GCNGC 4 cut(s) 101, 104, 659, 662
Bme1390I CCNGG 6 cut(s) 38, 242, 328, 367, 416, 492
Bme18I GGWCC 1 cut(s) 244
BmeT110I CYCGRG 1 cut(s) 440
BmgT120I GGNCC 3 cut(s) 244, 488, 566
BmiI GGNNCC 5 cut(s) 322, 490, 556, 567, 600
BmrFI CCNGG 6 cut(s) 38, 242, 328, 367, 416, 492
BpmI CTGGAG 2 cut(s) 530, 551
BpuEI CTTGAG 2 cut(s) 323, 545
BpuMI CCSGG 3 cut(s) 38, 416, 492
BsaHI GRCGYC 3 cut(s) 26, 572, 599
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 5 cut(s) 36, 100, 326, 327, 490
BsaWI WCCGGW 2 cut(s) 353, 458
Bsc4I CCNNNNNNNGG 4 cut(s) 37, 331, 385, 564
Bse118I RCCGGY 4 cut(s) 203, 397, 568, 601
BseBI CCWGG 3 cut(s) 242, 328, 367
BseDI CCNNGG 5 cut(s) 36, 100, 326, 327, 490
BseGI GGATG 2 cut(s) 32, 120
BseLI CCNNNNNNNGG 4 cut(s) 37, 331, 385, 564
BseRI GAGGAG 2 cut(s) 401, 665
Bsh1236I CGCG 1 cut(s) 102
BshFI GGCC 6 cut(s) 41, 105, 203, 222, 489, 568
BshNI GGYRCC 1 cut(s) 598
BsiHKCI CYCGRG 1 cut(s) 440
BsiSI CCGG 9 cut(s) 38, 204, 354, 398, 415, 459, 492, 569, 602
BslFI GGGAC 1 cut(s) 601
BslI CCNNNNNNNGG 4 cut(s) 37, 331, 385, 564
BsmAI GTCTC 3 cut(s) 149, 489, 506
BsmFI GGGAC 1 cut(s) 601
BsnI GGCC 6 cut(s) 41, 105, 203, 222, 489, 568
Bso31I GGTCTC 1 cut(s) 149
BsoBI CYCGRG 1 cut(s) 440
Bsp143I GATC 1 cut(s) 390
BspANI GGCC 6 cut(s) 41, 105, 203, 222, 489, 568
BspFNI CGCG 1 cut(s) 102
BspHI TCATGA 1 cut(s) 618
BspLI GGNNCC 5 cut(s) 322, 490, 556, 567, 600
BspPI GGATC 1 cut(s) 385
BspT107I GGYRCC 1 cut(s) 598
BspTNI GGTCTC 1 cut(s) 149
BsrBI CCGCTC 3 cut(s) 126, 464, 657
BsrFI RCCGGY 4 cut(s) 203, 397, 568, 601
BssAI RCCGGY 4 cut(s) 203, 397, 568, 601
BssECI CCNNGG 5 cut(s) 36, 100, 326, 327, 490
BssMI GATC 1 cut(s) 390
BssNI GRCGYC 3 cut(s) 26, 572, 599
Bst2UI CCWGG 3 cut(s) 242, 328, 367
Bst4CI ACNGT 2 cut(s) 160, 229
Bst6I CTCTTC 1 cut(s) 147
BstACI GRCGYC 3 cut(s) 26, 572, 599
BstC8I GCNNGC 5 cut(s) 399, 570, 603, 630, 665
BstDSI CCRYGG 1 cut(s) 100
BstF5I GGATG 2 cut(s) 32, 120
BstFNI CGCG 1 cut(s) 102
BstH2I RGCGCY 2 cut(s) 509, 602
BstHHI GCGC 2 cut(s) 508, 601
BstKTI GATC 1 cut(s) 393
BstMAI GTCTC 3 cut(s) 149, 489, 506
BstMBI GATC 1 cut(s) 390
BstMWI GCNNNNNNNGC 3 cut(s) 108, 219, 526
BstNI CCWGG 3 cut(s) 242, 328, 367
BstSCI CCNGG 6 cut(s) 36, 240, 326, 365, 414, 490
BstUI CGCG 1 cut(s) 102
BstX2I RGATCY 1 cut(s) 390
BstYI RGATCY 1 cut(s) 390
BsuRI GGCC 6 cut(s) 41, 105, 203, 222, 489, 568
BtgI CCRYGG 1 cut(s) 100
BtsCI GGATG 2 cut(s) 32, 120
Cac8I GCNNGC 5 cut(s) 399, 570, 603, 630, 665
CciI TCATGA 1 cut(s) 618
CfoI GCGC 2 cut(s) 508, 601
Cfr10I RCCGGY 4 cut(s) 203, 397, 568, 601
Cfr13I GGNCC 3 cut(s) 244, 488, 566
Cfr42I CCGCGG 1 cut(s) 103
CseI GACGC 2 cut(s) 34, 561
CviAII CATG 3 cut(s) 199, 349, 619
DinI GGCGCC 1 cut(s) 600
DpnI GATC 1 cut(s) 392
DpnII GATC 1 cut(s) 390
EaeI YGGCCR 1 cut(s) 201
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
EciI GGCGGA 2 cut(s) 98, 118
Eco147I AGGCCT 1 cut(s) 222
Eco31I GGTCTC 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 244
Eco88I CYCGRG 1 cut(s) 440
EcoO109I RGGNCCY 1 cut(s) 244
EcoRII CCWGG 3 cut(s) 240, 326, 365
EgeI GGCGCC 1 cut(s) 600
EheI GGCGCC 1 cut(s) 600
FaeI CATG 3 cut(s) 202, 352, 622
FaiI YATR 5 cut(s) 200, 350, 540, 620, 636
FaqI GGGAC 1 cut(s) 601
FatI CATG 3 cut(s) 198, 348, 618
FauI CCCGC 4 cut(s) 67, 146, 402, 656
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 4 cut(s) 100, 103, 658, 661
FokI GGATG 2 cut(s) 19, 107
Fsp4HI GCNGC 4 cut(s) 100, 103, 658, 661
GlaI GCGC 2 cut(s) 507, 600
GluI GCNGC 4 cut(s) 100, 103, 658, 661
GsuI CTGGAG 2 cut(s) 530, 551
HaeII RGCGCY 2 cut(s) 509, 602
HaeIII GGCC 6 cut(s) 41, 105, 203, 222, 489, 568
HapII CCGG 9 cut(s) 38, 204, 354, 398, 415, 459, 492, 569, 602
HgaI GACGC 2 cut(s) 34, 561
HhaI GCGC 2 cut(s) 508, 601
Hin1I GRCGYC 3 cut(s) 26, 572, 599
Hin1II CATG 3 cut(s) 202, 352, 622
Hin6I GCGC 2 cut(s) 506, 599
HinP1I GCGC 2 cut(s) 506, 599
HinfI GANTC 2 cut(s) 266, 592
HpaII CCGG 9 cut(s) 38, 204, 354, 398, 415, 459, 492, 569, 602
HphI GGTGA 3 cut(s) 10, 217, 448
Hpy166II GTNNAC 3 cut(s) 18, 304, 379
Hpy188III TCNNGA 6 cut(s) 172, 182, 424, 442, 586, 619
Hpy8I GTNNAC 3 cut(s) 18, 304, 379
Hpy99I CGWCG 6 cut(s) 28, 164, 287, 526, 584, 587
HpyAV CCTTC 1 cut(s) 421
HpyCH4III ACNGT 2 cut(s) 160, 229
HpyCH4IV ACGT 1 cut(s) 579
HpyCH4V TGCA 2 cut(s) 348, 628
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 219, 526
HpySE526I ACGT 1 cut(s) 579
Hsp92I GRCGYC 3 cut(s) 26, 572, 599
Hsp92II CATG 3 cut(s) 202, 352, 622
HspAI GCGC 2 cut(s) 506, 599
KasI GGCGCC 1 cut(s) 598
KroI GCCGGC 3 cut(s) 397, 568, 601
KroNI GCCGGC 3 cut(s) 399, 570, 603
KspI CCGCGG 1 cut(s) 103
Kzo9I GATC 1 cut(s) 390
LmnI GCTCC 4 cut(s) 131, 461, 560, 610
MaeII ACGT 1 cut(s) 579
MalI GATC 1 cut(s) 392
MbiI CCGCTC 3 cut(s) 126, 464, 657
MboI GATC 1 cut(s) 390
MboII GAAGA 1 cut(s) 164
MflI RGATCY 1 cut(s) 390
MluCI AATT 2 cut(s) 236, 644
Mly113I GGCGCC 1 cut(s) 599
MmeI TCCRAC 1 cut(s) 600
MreI CGCCGGCG 1 cut(s) 601
MroNI GCCGGC 3 cut(s) 397, 568, 601
MseI TTAA 1 cut(s) 405
MspA1I CMGCKG 1 cut(s) 102
MspI CCGG 9 cut(s) 38, 204, 354, 398, 415, 459, 492, 569, 602
MspR9I CCNGG 6 cut(s) 38, 242, 328, 367, 416, 492
MvaI CCWGG 3 cut(s) 242, 328, 367
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 3 cut(s) 108, 219, 526
NaeI GCCGGC 3 cut(s) 399, 570, 603
NarI GGCGCC 1 cut(s) 599
NciI CCSGG 3 cut(s) 38, 416, 492
NdeII GATC 1 cut(s) 390
NgoMIV GCCGGC 3 cut(s) 397, 568, 601
NlaIII CATG 3 cut(s) 202, 352, 622
NlaIV GGNNCC 5 cut(s) 322, 490, 556, 567, 600
PaeR7I CTCGAG 1 cut(s) 440
PagI TCATGA 1 cut(s) 618
PasI CCCWGGG 1 cut(s) 327
PceI AGGCCT 1 cut(s) 222
PcsI WCGNNNNNNNCGW 1 cut(s) 381
PdiI GCCGGC 3 cut(s) 399, 570, 603
PfeI GAWTC 2 cut(s) 266, 592
PfoI TCCNGGA 1 cut(s) 240
PkrI GCNGC 4 cut(s) 101, 104, 659, 662
PluTI GGCGCC 1 cut(s) 602
PpuMI RGGWCCY 1 cut(s) 244
Psp5II RGGWCCY 1 cut(s) 244
Psp6I CCWGG 3 cut(s) 240, 326, 365
PspGI CCWGG 3 cut(s) 240, 326, 365
PspN4I GGNNCC 5 cut(s) 322, 490, 556, 567, 600
PspPI GGNCC 3 cut(s) 244, 488, 566
PspPPI RGGWCCY 1 cut(s) 244
PsuI RGATCY 1 cut(s) 390
SacII CCGCGG 1 cut(s) 103
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 4 cut(s) 100, 103, 658, 661
Sau3AI GATC 1 cut(s) 390
Sau96I GGNCC 3 cut(s) 244, 488, 566
ScrFI CCNGG 6 cut(s) 38, 242, 328, 367, 416, 492
SetI ASST 8 cut(s) 23, 198, 215, 249, 279, 441, 582, 615
SfoI GGCGCC 1 cut(s) 600
Sfr274I CTCGAG 1 cut(s) 440
Sfr303I CCGCGG 1 cut(s) 103
SgrAI CRCCGGYG 1 cut(s) 601
SgrBI CCGCGG 1 cut(s) 103
SinI GGWCC 1 cut(s) 244
SlaI CTCGAG 1 cut(s) 440
SmlI CTYRAG 3 cut(s) 338, 440, 560
SmoI CTYRAG 3 cut(s) 338, 440, 560
Sse9I AATT 2 cut(s) 236, 644
SseBI AGGCCT 1 cut(s) 222
SspDI GGCGCC 1 cut(s) 598
StuI AGGCCT 1 cut(s) 222
StyD4I CCNGG 6 cut(s) 36, 240, 326, 365, 414, 490
TaaI ACNGT 2 cut(s) 160, 229
TaiI ACGT 1 cut(s) 582
TaqI TCGA 6 cut(s) 23, 162, 183, 315, 441, 471
TasI AATT 2 cut(s) 236, 644
TauI GCSGC 4 cut(s) 102, 105, 660, 663
TfiI GAWTC 2 cut(s) 266, 592
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TspDTI ATGAA 1 cut(s) 374
TspGWI ACGGA 1 cut(s) 448
VpaK11BI GGWCC 1 cut(s) 244
XhoI CTCGAG 1 cut(s) 440
XmiI GTMKAC 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.