FvH4_2g21340

50S ribosomal protein L10

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016095
Physical Location & Seq
Reverse (-)
17758131 .. 17759357
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g21340.t1

Sequence Viewer

Length: 657 bp
ATGGAAGCCACTCTCGTCCTCTCCCCCTCCCCCTTATCCCTAACCAGACCCGCCAACCCCTTCCTCTCCCTCCCGACCCGACCCGGCTCCCGTCCCTACCGCCTCCCCACCATCCGGTCCGCCATCTCCCGCGTCAAGAAAGAAGAGACCGTCTCCACCATCAAAACCAACCTCGAAAACTGCTACCTCCTGGCCGGAATCAGCTACAAAGGCCTCACCGTCAAGCAATTCCAGGACCTCCGCAAAGCCCTACCGGACTCCACCAAGCTCATCGTCGCCAAGAACACCCTCGTCTTCAAGGCCATCGAGGGGACCCCCTGGGAGGCCCTCAAGCCGTGCATGACGGGGATGAACGCGTGGCTCTTTGTGCACAGCGAGGAGATCCCGCCGGCGATTAAGCCCTACCGGGATTTCCAGAGGGAGCGGAAGCTGGAGAACGACTTCACCGGAGCGGTGTTCGAGGGGAAGTTTTACGGTCCCGGAGATTTCAAGGCGCTGGAGACAATGCCGACGAGGCTGGAGATTTATGCCAAGCTGCTTGGCTCTCTTAAAGGACCGGCCTCGAATTTGGTGGGGACGATTCAGGCGCCGGCCAGGGAGCTGGTCATGACTTTGCAGGCGTATGTGCAGAAATTGGAGGAGGAGAGCGGGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L10

Protein Analysis

219

Amino Acids

24.29

Weight (kDa)

9.37

Isoelectric Point (pI)

37.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L10 PF00466 44 - 131 1.7e-18 Ribosomal protein L10
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016095)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13510
fragaria_vesca FvH4_2g21340
malus_domestica MD05G1196100.v1.1 MD10G1183400.v1.1
prunus_persica Prupe.8G222500_v2.0.a1
pyrus_communis pycom05g18310 pycom10g15840
rosa_chinensis RchiOBHm_Chr6g0287931
rosa_laevigata RLG00000012455
rosa_multiflora Rmu_sc0000042.1_g000003
rosa_roxburghii Rroxscaffold_7G00180660
rosa_rugosa Rorug06G0193500
rosa_samantha Rh6CG300800 Rh6DG301400
rosa_wichuraiana Rw6G026170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 586
AccBSI CCGCTC 3 cut(s) 424, 452, 648
AccII CGCG 2 cut(s) 132, 356
AciI CCGC 9 cut(s) 51, 100, 120, 130, 241, 386, 424, 452, 648
AclWI GGATC 1 cut(s) 376
AcoI YGGCCR 2 cut(s) 192, 591
AcsI RAATTY 1 cut(s) 565
AcyI GRCGYC 1 cut(s) 587
AfiI CCNNNNNNNGG 3 cut(s) 114, 309, 322
AflIII ACRYGT 1 cut(s) 354
AgsI TTSAA 2 cut(s) 298, 490
AjnI CCWGG 4 cut(s) 189, 231, 317, 593
AluBI AGCT 5 cut(s) 204, 268, 430, 535, 601
AluI AGCT 5 cut(s) 204, 268, 430, 535, 601
Alw21I GWGCWC 1 cut(s) 372
Alw26I GTCTC 3 cut(s) 140, 157, 494
Alw44I GTGCAC 1 cut(s) 368
AlwI GGATC 1 cut(s) 376
AoxI GGCC 6 cut(s) 192, 211, 300, 324, 558, 591
ApaLI GTGCAC 1 cut(s) 368
ApeKI GCWGC 1 cut(s) 535
ApoI RAATTY 1 cut(s) 565
Asp700I GAANNNNTTC 1 cut(s) 440
AspLEI GCGC 2 cut(s) 496, 589
AspS9I GGNCC 6 cut(s) 117, 235, 312, 325, 476, 554
AsuC2I CCSGG 3 cut(s) 84, 407, 480
AsuHPI GGTGA 2 cut(s) 208, 436
AvaII GGWCC 5 cut(s) 117, 235, 312, 476, 554
BaeGI GKGCMC 1 cut(s) 372
BanI GGYRCC 1 cut(s) 586
BbsI GAAGAC 1 cut(s) 286
Bbv12I GWGCWC 1 cut(s) 372
BbvI GCAGC 1 cut(s) 522
BccI CCATC 4 cut(s) 119, 131, 167, 311
BceAI ACGGC 1 cut(s) 319
BciT130I CCWGG 4 cut(s) 191, 233, 319, 595
BcnI CCSGG 3 cut(s) 84, 407, 480
BcoDI GTCTC 3 cut(s) 140, 157, 494
BfoI RGCGCY 2 cut(s) 497, 590
BglI GCCNNNNNGGC 1 cut(s) 514
BisI GCNGC 1 cut(s) 536
BlsI GCNGC 1 cut(s) 537
Bme1390I CCNGG 7 cut(s) 84, 191, 233, 319, 407, 480, 595
Bme18I GGWCC 5 cut(s) 117, 235, 312, 476, 554
BmgT120I GGNCC 6 cut(s) 117, 235, 312, 325, 476, 554
BmiI GGNNCC 5 cut(s) 88, 313, 314, 478, 588
BmrFI CCNGG 7 cut(s) 84, 191, 233, 319, 407, 480, 595
BpiI GAAGAC 1 cut(s) 286
BplI GAGNNNNNCTC 2 cut(s) 137, 169
BpmI CTGGAG 3 cut(s) 452, 518, 539
BpuEI CTTGAG 1 cut(s) 314
BpuMI CCSGG 3 cut(s) 84, 407, 480
BsaHI GRCGYC 1 cut(s) 587
BsaI GGTCTC 1 cut(s) 140
BsaJI CCNNGG 3 cut(s) 317, 318, 594
BsaWI WCCGGW 3 cut(s) 114, 253, 446
Bsc4I CCNNNNNNNGG 3 cut(s) 114, 309, 322
Bse118I RCCGGY 3 cut(s) 388, 556, 589
BseBI CCWGG 4 cut(s) 191, 233, 319, 595
BseDI CCNNGG 3 cut(s) 317, 318, 594
BseGI GGATG 2 cut(s) 111, 354
BseLI CCNNNNNNNGG 3 cut(s) 114, 309, 322
BseRI GAGGAG 3 cut(s) 392, 653, 656
BseSI GKGCMC 1 cut(s) 372
BseXI GCAGC 1 cut(s) 522
BsgI GTGCAG 1 cut(s) 647
Bsh1236I CGCG 2 cut(s) 132, 356
BshFI GGCC 6 cut(s) 194, 213, 302, 326, 560, 593
BshNI GGYRCC 1 cut(s) 586
BsiHKAI GWGCWC 1 cut(s) 372
BslFI GGGAC 4 cut(s) 78, 325, 462, 589
BslI CCNNNNNNNGG 3 cut(s) 114, 309, 322
BsmAI GTCTC 3 cut(s) 140, 157, 494
BsmBI CGTCTC 1 cut(s) 157
BsmFI GGGAC 4 cut(s) 78, 325, 462, 589
BsnI GGCC 6 cut(s) 194, 213, 302, 326, 560, 593
Bso31I GGTCTC 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 372
Bsp143I GATC 1 cut(s) 381
BspACI CCGC 9 cut(s) 51, 100, 120, 130, 241, 386, 424, 452, 648
BspANI GGCC 6 cut(s) 194, 213, 302, 326, 560, 593
BspFNI CGCG 2 cut(s) 132, 356
BspHI TCATGA 1 cut(s) 606
BspLI GGNNCC 5 cut(s) 88, 313, 314, 478, 588
BspPI GGATC 1 cut(s) 376
BspT107I GGYRCC 1 cut(s) 586
BspTNI GGTCTC 1 cut(s) 140
BsrBI CCGCTC 3 cut(s) 424, 452, 648
BsrFI RCCGGY 3 cut(s) 388, 556, 589
BssAI RCCGGY 3 cut(s) 388, 556, 589
BssECI CCNNGG 3 cut(s) 317, 318, 594
BssMI GATC 1 cut(s) 381
BssNI GRCGYC 1 cut(s) 587
Bst2UI CCWGG 4 cut(s) 191, 233, 319, 595
Bst4CI ACNGT 3 cut(s) 151, 220, 476
Bst6I CTCTTC 1 cut(s) 138
BstACI GRCGYC 1 cut(s) 587
BstC8I GCNNGC 4 cut(s) 390, 591, 618, 650
BstF5I GGATG 2 cut(s) 111, 354
BstFNI CGCG 2 cut(s) 132, 356
BstH2I RGCGCY 2 cut(s) 497, 590
BstHHI GCGC 2 cut(s) 496, 589
BstKTI GATC 1 cut(s) 384
BstMAI GTCTC 3 cut(s) 140, 157, 494
BstMBI GATC 1 cut(s) 381
BstMWI GCNNNNNNNGC 3 cut(s) 210, 367, 514
BstNI CCWGG 4 cut(s) 191, 233, 319, 595
BstSCI CCNGG 7 cut(s) 82, 189, 231, 317, 405, 478, 593
BstSLI GKGCMC 1 cut(s) 372
BstUI CGCG 2 cut(s) 132, 356
BstV1I GCAGC 1 cut(s) 522
BstV2I GAAGAC 1 cut(s) 286
BstX2I RGATCY 1 cut(s) 381
BstXI CCANNNNNNTGG 1 cut(s) 601
BstYI RGATCY 1 cut(s) 381
BsuRI GGCC 6 cut(s) 194, 213, 302, 326, 560, 593
BtsCI GGATG 2 cut(s) 111, 354
Cac8I GCNNGC 4 cut(s) 390, 591, 618, 650
CciI TCATGA 1 cut(s) 606
CfoI GCGC 2 cut(s) 496, 589
Cfr10I RCCGGY 3 cut(s) 388, 556, 589
Cfr13I GGNCC 6 cut(s) 117, 235, 312, 325, 476, 554
CpoI CGGWCCG 1 cut(s) 117
CseI GACGC 1 cut(s) 121
CspI CGGWCCG 1 cut(s) 117
CviAII CATG 2 cut(s) 340, 607
DinI GGCGCC 1 cut(s) 588
DpnI GATC 1 cut(s) 383
DpnII GATC 1 cut(s) 381
EaeI YGGCCR 2 cut(s) 192, 591
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
EciI GGCGGA 1 cut(s) 109
Eco147I AGGCCT 1 cut(s) 213
Eco31I GGTCTC 1 cut(s) 140
Eco47I GGWCC 5 cut(s) 117, 235, 312, 476, 554
EcoO109I RGGNCCY 3 cut(s) 235, 312, 325
EcoRII CCWGG 4 cut(s) 189, 231, 317, 593
EgeI GGCGCC 1 cut(s) 588
EheI GGCGCC 1 cut(s) 588
Esp3I CGTCTC 1 cut(s) 157
FaeI CATG 2 cut(s) 343, 610
FaiI YATR 4 cut(s) 341, 528, 608, 624
FaqI GGGAC 4 cut(s) 78, 325, 462, 589
FatI CATG 2 cut(s) 339, 606
FauI CCCGC 4 cut(s) 58, 137, 393, 641
Fnu4HI GCNGC 1 cut(s) 536
FokI GGATG 2 cut(s) 98, 361
Fsp4HI GCNGC 1 cut(s) 536
GlaI GCGC 2 cut(s) 495, 588
GluI GCNGC 1 cut(s) 536
GsuI CTGGAG 3 cut(s) 452, 518, 539
HaeII RGCGCY 2 cut(s) 497, 590
HaeIII GGCC 6 cut(s) 194, 213, 302, 326, 560, 593
HgaI GACGC 1 cut(s) 121
HhaI GCGC 2 cut(s) 496, 589
Hin1I GRCGYC 1 cut(s) 587
Hin1II CATG 2 cut(s) 343, 610
Hin6I GCGC 2 cut(s) 494, 587
HinP1I GCGC 2 cut(s) 494, 587
HinfI GANTC 3 cut(s) 198, 257, 580
HphI GGTGA 2 cut(s) 208, 436
Hpy166II GTNNAC 1 cut(s) 370
Hpy188III TCNNGA 4 cut(s) 73, 136, 415, 607
Hpy8I GTNNAC 1 cut(s) 370
Hpy99I CGWCG 2 cut(s) 278, 514
HpyAV CCTTC 1 cut(s) 70
HpyCH4III ACNGT 3 cut(s) 151, 220, 476
HpyCH4V TGCA 4 cut(s) 339, 370, 616, 628
HpyF10VI GCNNNNNNNGC 3 cut(s) 210, 367, 514
Hsp92I GRCGYC 1 cut(s) 587
Hsp92II CATG 2 cut(s) 343, 610
HspAI GCGC 2 cut(s) 494, 587
KasI GGCGCC 1 cut(s) 586
KflI GGGWCCC 1 cut(s) 312
KroI GCCGGC 2 cut(s) 388, 589
KroNI GCCGGC 2 cut(s) 390, 591
Kzo9I GATC 1 cut(s) 381
LmnI GCTCC 4 cut(s) 92, 421, 449, 598
Lsp1109I GCAGC 1 cut(s) 522
MalI GATC 1 cut(s) 383
MbiI CCGCTC 3 cut(s) 424, 452, 648
MboI GATC 1 cut(s) 381
MboII GAAGA 2 cut(s) 155, 286
MflI RGATCY 1 cut(s) 381
MhlI GDGCHC 1 cut(s) 372
MluCI AATT 3 cut(s) 227, 565, 632
MluI ACGCGT 1 cut(s) 354
Mly113I GGCGCC 1 cut(s) 587
MlyI GAGTC 1 cut(s) 251
MreI CGCCGGCG 1 cut(s) 388
MroNI GCCGGC 2 cut(s) 388, 589
MroXI GAANNNNTTC 1 cut(s) 440
MseI TTAA 2 cut(s) 396, 549
MspR9I CCNGG 7 cut(s) 84, 191, 233, 319, 407, 480, 595
MvaI CCWGG 4 cut(s) 191, 233, 319, 595
MvnI CGCG 2 cut(s) 132, 356
MwoI GCNNNNNNNGC 3 cut(s) 210, 367, 514
NaeI GCCGGC 2 cut(s) 390, 591
NarI GGCGCC 1 cut(s) 587
NciI CCSGG 3 cut(s) 84, 407, 480
NdeII GATC 1 cut(s) 381
NgoMIV GCCGGC 2 cut(s) 388, 589
NlaIII CATG 2 cut(s) 343, 610
NlaIV GGNNCC 5 cut(s) 88, 313, 314, 478, 588
PagI TCATGA 1 cut(s) 606
PasI CCCWGGG 1 cut(s) 318
PceI AGGCCT 1 cut(s) 213
PdiI GCCGGC 2 cut(s) 390, 591
PdmI GAANNNNTTC 1 cut(s) 440
PfeI GAWTC 2 cut(s) 198, 580
PfoI TCCNGGA 2 cut(s) 231, 478
PkrI GCNGC 1 cut(s) 537
PleI GAGTC 1 cut(s) 251
PluTI GGCGCC 1 cut(s) 590
PpsI GAGTC 1 cut(s) 251
PpuMI RGGWCCY 2 cut(s) 235, 312
Psp5II RGGWCCY 2 cut(s) 235, 312
Psp6I CCWGG 4 cut(s) 189, 231, 317, 593
PspGI CCWGG 4 cut(s) 189, 231, 317, 593
PspN4I GGNNCC 5 cut(s) 88, 313, 314, 478, 588
PspPI GGNCC 6 cut(s) 117, 235, 312, 325, 476, 554
PspPPI RGGWCCY 2 cut(s) 235, 312
PsuI RGATCY 1 cut(s) 381
Rsr2I CGGWCCG 1 cut(s) 117
RsrII CGGWCCG 1 cut(s) 117
SaqAI TTAA 2 cut(s) 396, 549
SatI GCNGC 1 cut(s) 536
Sau3AI GATC 1 cut(s) 381
Sau96I GGNCC 6 cut(s) 117, 235, 312, 325, 476, 554
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 7 cut(s) 84, 191, 233, 319, 407, 480, 595
SduI GDGCHC 1 cut(s) 372
SetI ASST 8 cut(s) 174, 189, 206, 240, 270, 432, 537, 603
SfoI GGCGCC 1 cut(s) 588
SgrAI CRCCGGYG 1 cut(s) 388
SinI GGWCC 5 cut(s) 117, 235, 312, 476, 554
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
Sse9I AATT 3 cut(s) 227, 565, 632
SseBI AGGCCT 1 cut(s) 213
SsiI CCGC 9 cut(s) 51, 100, 120, 130, 241, 386, 424, 452, 648
SspDI GGCGCC 1 cut(s) 586
StuI AGGCCT 1 cut(s) 213
StyD4I CCNGG 7 cut(s) 82, 189, 231, 317, 405, 478, 593
TaaI ACNGT 3 cut(s) 151, 220, 476
TaqI TCGA 4 cut(s) 174, 306, 459, 563
TasI AATT 3 cut(s) 227, 565, 632
TfiI GAWTC 2 cut(s) 198, 580
Tru1I TTAA 2 cut(s) 396, 549
Tru9I TTAA 2 cut(s) 396, 549
TseI GCWGC 1 cut(s) 535
TspDTI ATGAA 1 cut(s) 365
VneI GTGCAC 1 cut(s) 368
VpaK11BI GGWCC 5 cut(s) 117, 235, 312, 476, 554
XapI RAATTY 1 cut(s) 565
XmnI GAANNNNTTC 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.