Rroxscaffold_7G00180660

50S ribosomal protein L10

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0016095
Physical Location & Seq
Forward (+)
19981242 .. 19981911
670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00180660.1

Sequence Viewer

Length: 588 bp
ATGGAAGCCACTCTGTTCACCTCGACGCCCCCATCCCCGGCCTTATCCCTAACCCGACCCGCCAACCCATTCCTCTCCCTCCCCTCCCGTCCCCACCGCCGCCGCCTCCGCCTCCCGACCATCCGCTCGGCCATCTCCCGCACCAAGAAAGAAGAGACGGTCGAAACCATCAAGACCAATCTCGACAACTGCTACCTCATGGCCGGTATCAGCTACAAAGGCCTCACCGTCAAGCAATTCCAGGACCTCCGCAAAGCCCTACCGGACTCCACCAAGCTCATCGTCGCCAAGAACACTCTCCGAGGAGATCCCCCGGCGATTAAGCCCTACCGGGACTTCCAGAAGGAACGGAAGCTCGAGAACAATGACTTCACCGGAGCGGTGTTCGAGGGCAAGTTTTACGGCCCCGGAGACTTCAAGGCGCTCGAGACAATGCCGACGAGGCTGGAGATTTATGCCAAGTTGCTTGGCTCCCTCAAGGGGCCGGCGTCCAACGTCGTCGGGACGATTCAGGCGCCGGCGAGGGAGCTGGTCATGACTTTGCAGGCGTATGTGCAGAAATTGGAGGAGAGCGGCGGCGGGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L10

Protein Analysis

195

Amino Acids

21.65

Weight (kDa)

9.84

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L10 PF00466 47 - 100 1.5e-10 Ribosomal protein L10
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016095)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13510
fragaria_vesca FvH4_2g21340
malus_domestica MD05G1196100.v1.1 MD10G1183400.v1.1
prunus_persica Prupe.8G222500_v2.0.a1
pyrus_communis pycom05g18310 pycom10g15840
rosa_chinensis RchiOBHm_Chr6g0287931
rosa_laevigata RLG00000012455
rosa_multiflora Rmu_sc0000042.1_g000003
rosa_roxburghii Rroxscaffold_7G00180660
rosa_rugosa Rorug06G0193500
rosa_samantha Rh6CG300800 Rh6DG301400
rosa_wichuraiana Rw6G026170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 514
AccBSI CCGCTC 3 cut(s) 126, 380, 573
AclWI GGATC 1 cut(s) 302
AcoI YGGCCR 2 cut(s) 129, 201
AcyI GRCGYC 3 cut(s) 26, 488, 515
AfiI CCNNNNNNNGG 2 cut(s) 37, 480
AgsI TTSAA 1 cut(s) 418
AjnI CCWGG 1 cut(s) 240
AluBI AGCT 4 cut(s) 213, 277, 355, 529
AluI AGCT 4 cut(s) 213, 277, 355, 529
Alw26I GTCTC 3 cut(s) 149, 405, 422
AlwI GGATC 1 cut(s) 302
Ama87I CYCGRG 2 cut(s) 356, 425
AoxI GGCC 6 cut(s) 39, 129, 201, 220, 403, 482
AspLEI GCGC 2 cut(s) 424, 517
AspS9I GGNCC 3 cut(s) 244, 404, 482
AsuC2I CCSGG 4 cut(s) 38, 314, 332, 408
AsuHPI GGTGA 3 cut(s) 10, 217, 364
AvaI CYCGRG 2 cut(s) 356, 425
AvaII GGWCC 1 cut(s) 244
BanI GGYRCC 1 cut(s) 514
BccI CCATC 4 cut(s) 40, 128, 140, 176
BceAI ACGGC 1 cut(s) 418
BciT130I CCWGG 1 cut(s) 242
BcnI CCSGG 4 cut(s) 38, 314, 332, 408
BcoDI GTCTC 3 cut(s) 149, 405, 422
BfoI RGCGCY 2 cut(s) 425, 518
BglI GCCNNNNNGGC 1 cut(s) 442
BisI GCNGC 4 cut(s) 100, 103, 574, 577
BlsI GCNGC 4 cut(s) 101, 104, 575, 578
Bme1390I CCNGG 5 cut(s) 38, 242, 314, 332, 408
Bme18I GGWCC 1 cut(s) 244
BmeT110I CYCGRG 2 cut(s) 356, 425
BmgT120I GGNCC 3 cut(s) 244, 404, 482
BmiI GGNNCC 4 cut(s) 406, 472, 483, 516
BmrFI CCNGG 5 cut(s) 38, 242, 314, 332, 408
BpmI CTGGAG 1 cut(s) 467
BpuEI CTTGAG 1 cut(s) 461
BpuMI CCSGG 4 cut(s) 38, 314, 332, 408
BsaHI GRCGYC 3 cut(s) 26, 488, 515
BsaJI CCNNGG 4 cut(s) 36, 301, 312, 406
BsaWI WCCGGW 2 cut(s) 262, 374
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 480
Bse118I RCCGGY 3 cut(s) 203, 484, 517
BseBI CCWGG 1 cut(s) 242
BseDI CCNNGG 4 cut(s) 36, 301, 312, 406
BseGI GGATG 2 cut(s) 32, 120
BseLI CCNNNNNNNGG 2 cut(s) 37, 480
BseRI GAGGAG 2 cut(s) 318, 581
BsgI GTGCAG 1 cut(s) 575
Bsh1285I CGRYCG 1 cut(s) 162
BshFI GGCC 6 cut(s) 41, 131, 203, 222, 405, 484
BshNI GGYRCC 1 cut(s) 514
BsiEI CGRYCG 1 cut(s) 162
BsiHKCI CYCGRG 2 cut(s) 356, 425
BsiSI CCGG 9 cut(s) 38, 204, 263, 314, 331, 375, 408, 485, 518
BslFI GGGAC 3 cut(s) 75, 347, 517
BslI CCNNNNNNNGG 2 cut(s) 37, 480
BsmAI GTCTC 3 cut(s) 149, 405, 422
BsmBI CGTCTC 1 cut(s) 149
BsmFI GGGAC 3 cut(s) 75, 347, 517
BsnI GGCC 6 cut(s) 41, 131, 203, 222, 405, 484
BsoBI CYCGRG 2 cut(s) 356, 425
Bsp143I GATC 1 cut(s) 307
BspANI GGCC 6 cut(s) 41, 131, 203, 222, 405, 484
BspHI TCATGA 1 cut(s) 534
BspLI GGNNCC 4 cut(s) 406, 472, 483, 516
BspPI GGATC 1 cut(s) 302
BspT107I GGYRCC 1 cut(s) 514
BsrBI CCGCTC 3 cut(s) 126, 380, 573
BsrFI RCCGGY 3 cut(s) 203, 484, 517
BssAI RCCGGY 3 cut(s) 203, 484, 517
BssECI CCNNGG 4 cut(s) 36, 301, 312, 406
BssMI GATC 1 cut(s) 307
BssNI GRCGYC 3 cut(s) 26, 488, 515
Bst2UI CCWGG 1 cut(s) 242
Bst4CI ACNGT 2 cut(s) 160, 229
Bst6I CTCTTC 1 cut(s) 147
BstACI GRCGYC 3 cut(s) 26, 488, 515
BstC8I GCNNGC 4 cut(s) 486, 519, 546, 581
BstF5I GGATG 2 cut(s) 32, 120
BstH2I RGCGCY 2 cut(s) 425, 518
BstHHI GCGC 2 cut(s) 424, 517
BstKTI GATC 1 cut(s) 310
BstMAI GTCTC 3 cut(s) 149, 405, 422
BstMBI GATC 1 cut(s) 307
BstMCI CGRYCG 1 cut(s) 162
BstMWI GCNNNNNNNGC 3 cut(s) 108, 219, 442
BstNI CCWGG 1 cut(s) 242
BstSCI CCNGG 5 cut(s) 36, 240, 312, 330, 406
BstX2I RGATCY 1 cut(s) 307
BstYI RGATCY 1 cut(s) 307
BsuRI GGCC 6 cut(s) 41, 131, 203, 222, 405, 484
BtsCI GGATG 2 cut(s) 32, 120
Cac8I GCNNGC 4 cut(s) 486, 519, 546, 581
CciI TCATGA 1 cut(s) 534
CfoI GCGC 2 cut(s) 424, 517
Cfr10I RCCGGY 3 cut(s) 203, 484, 517
Cfr13I GGNCC 3 cut(s) 244, 404, 482
CseI GACGC 2 cut(s) 34, 477
CviAII CATG 2 cut(s) 199, 535
DinI GGCGCC 1 cut(s) 516
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
EaeI YGGCCR 2 cut(s) 129, 201
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
EciI GGCGGA 1 cut(s) 98
Eco147I AGGCCT 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 244
Eco88I CYCGRG 2 cut(s) 356, 425
EcoO109I RGGNCCY 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 240
EgeI GGCGCC 1 cut(s) 516
EheI GGCGCC 1 cut(s) 516
Esp3I CGTCTC 1 cut(s) 149
FaeI CATG 2 cut(s) 202, 538
FaiI YATR 4 cut(s) 200, 456, 536, 552
FaqI GGGAC 3 cut(s) 75, 347, 517
FatI CATG 2 cut(s) 198, 534
FauI CCCGC 3 cut(s) 67, 146, 572
Fnu4HI GCNGC 4 cut(s) 100, 103, 574, 577
FokI GGATG 2 cut(s) 19, 107
Fsp4HI GCNGC 4 cut(s) 100, 103, 574, 577
GlaI GCGC 2 cut(s) 423, 516
GluI GCNGC 4 cut(s) 100, 103, 574, 577
GsuI CTGGAG 1 cut(s) 467
HaeII RGCGCY 2 cut(s) 425, 518
HaeIII GGCC 6 cut(s) 41, 131, 203, 222, 405, 484
HapII CCGG 9 cut(s) 38, 204, 263, 314, 331, 375, 408, 485, 518
HgaI GACGC 2 cut(s) 34, 477
HhaI GCGC 2 cut(s) 424, 517
Hin1I GRCGYC 3 cut(s) 26, 488, 515
Hin1II CATG 2 cut(s) 202, 538
Hin6I GCGC 2 cut(s) 422, 515
HinP1I GCGC 2 cut(s) 422, 515
HinfI GANTC 2 cut(s) 266, 508
HpaII CCGG 9 cut(s) 38, 204, 263, 314, 331, 375, 408, 485, 518
HphI GGTGA 3 cut(s) 10, 217, 364
Hpy166II GTNNAC 1 cut(s) 18
Hpy188I TCNGA 1 cut(s) 302
Hpy188III TCNNGA 8 cut(s) 115, 172, 182, 340, 358, 427, 502, 535
Hpy8I GTNNAC 1 cut(s) 18
Hpy99I CGWCG 5 cut(s) 28, 287, 442, 500, 503
HpyAV CCTTC 1 cut(s) 337
HpyCH4III ACNGT 2 cut(s) 160, 229
HpyCH4IV ACGT 1 cut(s) 495
HpyCH4V TGCA 2 cut(s) 544, 556
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 219, 442
HpySE526I ACGT 1 cut(s) 495
Hsp92I GRCGYC 3 cut(s) 26, 488, 515
Hsp92II CATG 2 cut(s) 202, 538
HspAI GCGC 2 cut(s) 422, 515
KasI GGCGCC 1 cut(s) 514
KroI GCCGGC 2 cut(s) 484, 517
KroNI GCCGGC 2 cut(s) 486, 519
Kzo9I GATC 1 cut(s) 307
LmnI GCTCC 3 cut(s) 377, 476, 526
MaeII ACGT 1 cut(s) 495
MalI GATC 1 cut(s) 309
MbiI CCGCTC 3 cut(s) 126, 380, 573
MboI GATC 1 cut(s) 307
MboII GAAGA 1 cut(s) 164
MflI RGATCY 1 cut(s) 307
MluCI AATT 2 cut(s) 236, 560
Mly113I GGCGCC 1 cut(s) 515
MlyI GAGTC 1 cut(s) 260
MmeI TCCRAC 1 cut(s) 516
MreI CGCCGGCG 1 cut(s) 517
MroNI GCCGGC 2 cut(s) 484, 517
MseI TTAA 1 cut(s) 321
MspI CCGG 9 cut(s) 38, 204, 263, 314, 331, 375, 408, 485, 518
MspR9I CCNGG 5 cut(s) 38, 242, 314, 332, 408
MvaI CCWGG 1 cut(s) 242
MwoI GCNNNNNNNGC 3 cut(s) 108, 219, 442
NaeI GCCGGC 2 cut(s) 486, 519
NarI GGCGCC 1 cut(s) 515
NciI CCSGG 4 cut(s) 38, 314, 332, 408
NdeII GATC 1 cut(s) 307
NgoMIV GCCGGC 2 cut(s) 484, 517
NlaIII CATG 2 cut(s) 202, 538
NlaIV GGNNCC 4 cut(s) 406, 472, 483, 516
NmeAIII GCCGAG 1 cut(s) 107
PaeR7I CTCGAG 2 cut(s) 356, 425
PagI TCATGA 1 cut(s) 534
PceI AGGCCT 1 cut(s) 222
PdiI GCCGGC 2 cut(s) 486, 519
PfeI GAWTC 1 cut(s) 508
PfoI TCCNGGA 1 cut(s) 240
PkrI GCNGC 4 cut(s) 101, 104, 575, 578
PleI GAGTC 1 cut(s) 260
PluTI GGCGCC 1 cut(s) 518
PpsI GAGTC 1 cut(s) 260
PpuMI RGGWCCY 1 cut(s) 244
Psp5II RGGWCCY 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 240
PspGI CCWGG 1 cut(s) 240
PspN4I GGNNCC 4 cut(s) 406, 472, 483, 516
PspPI GGNCC 3 cut(s) 244, 404, 482
PspPPI RGGWCCY 1 cut(s) 244
PsuI RGATCY 1 cut(s) 307
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 4 cut(s) 100, 103, 574, 577
Sau3AI GATC 1 cut(s) 307
Sau96I GGNCC 3 cut(s) 244, 404, 482
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 5 cut(s) 38, 242, 314, 332, 408
SetI ASST 8 cut(s) 23, 198, 215, 249, 279, 357, 498, 531
SfoI GGCGCC 1 cut(s) 516
Sfr274I CTCGAG 2 cut(s) 356, 425
SgrAI CRCCGGYG 1 cut(s) 517
SinI GGWCC 1 cut(s) 244
SlaI CTCGAG 2 cut(s) 356, 425
SmlI CTYRAG 3 cut(s) 356, 425, 476
SmoI CTYRAG 3 cut(s) 356, 425, 476
Sse9I AATT 2 cut(s) 236, 560
SseBI AGGCCT 1 cut(s) 222
SspDI GGCGCC 1 cut(s) 514
StuI AGGCCT 1 cut(s) 222
StyD4I CCNGG 5 cut(s) 36, 240, 312, 330, 406
TaaI ACNGT 2 cut(s) 160, 229
TaiI ACGT 1 cut(s) 498
TaqI TCGA 6 cut(s) 23, 162, 183, 357, 387, 426
TasI AATT 2 cut(s) 236, 560
TauI GCSGC 4 cut(s) 102, 105, 576, 579
TfiI GAWTC 1 cut(s) 508
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TspGWI ACGGA 1 cut(s) 364
VpaK11BI GGWCC 1 cut(s) 244
XhoI CTCGAG 2 cut(s) 356, 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.