Rh6DG301400

50S ribosomal protein L10

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0016095
Physical Location & Seq
Reverse (-)
50221936 .. 50222610
675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG301400.1

Sequence Viewer

Length: 675 bp
ATGGAAGCCACTCTGTTCAACTCGACGCCCCCATCCCCGGCCTTATCCCTAACCCTACCCGCCAACCCATTCCTCTCCCTCCCGTCCCCTCCCCACCGCCGCCGCCTCCGCCTCCCCACCATCCGCTCCGCCATCTCTCGCACCAAGAAAGAAGAGACCGTCGAAACCATCAAGACCAATCTCGACAACTGCTACCTCCTGGCCGGTATCAGCTACAAAGGCCTCACCGTCAAGCAATTCCAGGACCTCCGCAAAGCCCTACCGGACTCCACCAAGCTCATCGTCGCCAAGAACACTCTCGTCTACAAAGCCATCGAGGGAACCCCCTGGGAGGCTCTCAAGCCTTGCATGACCGGAATGAACGCCTGGCTGTTCGTCCACAGCGAGGAGATCCCGCCGGCCATTAAGCCCTACCGGGATTTCCAGAAGGAACGGAAGCTCGAGAACAACGACTTCACCGGAGCCGTGTTCGAGGGCAAGTTCTACGCCCCCGGAGACTTCAAGGCGCTGGAGACAATGCCGACGAGGCTGGAGATTTATGCCAAGTTGCTTGGCTCCCTCAAGGGGCCGGCGTCCAACCTCGTCGGGACGATTCAGGCGCCGGCGAGGGAGCTGGTCATGACTTTGCAGGCCTATGTGCAGAAATTGGAGGAGAGCGGCGGCGCCGGGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L10

Protein Analysis

224

Amino Acids

24.85

Weight (kDa)

9.35

Isoelectric Point (pI)

46.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L10 PF00466 47 - 141 2.2e-19 Ribosomal protein L10
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016095)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13510
fragaria_vesca FvH4_2g21340
malus_domestica MD05G1196100.v1.1 MD10G1183400.v1.1
prunus_persica Prupe.8G222500_v2.0.a1
pyrus_communis pycom05g18310 pycom10g15840
rosa_chinensis RchiOBHm_Chr6g0287931
rosa_laevigata RLG00000012455
rosa_multiflora Rmu_sc0000042.1_g000003
rosa_roxburghii Rroxscaffold_7G00180660
rosa_rugosa Rorug06G0193500
rosa_samantha Rh6CG300800 Rh6DG301400
rosa_wichuraiana Rw6G026170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 598, 662
AccBSI CCGCTC 2 cut(s) 126, 657
AccI GTMKAC 1 cut(s) 303
AclWI GGATC 1 cut(s) 385
AcoI YGGCCR 2 cut(s) 201, 399
AcyI GRCGYC 4 cut(s) 26, 572, 599, 663
AfiI CCNNNNNNNGG 4 cut(s) 37, 331, 385, 564
AgsI TTSAA 2 cut(s) 19, 502
AjnI CCWGG 4 cut(s) 198, 240, 326, 365
AluBI AGCT 4 cut(s) 213, 277, 439, 613
AluI AGCT 4 cut(s) 213, 277, 439, 613
Alw26I GTCTC 3 cut(s) 149, 489, 506
AlwI GGATC 1 cut(s) 385
Ama87I CYCGRG 1 cut(s) 440
AoxI GGCC 6 cut(s) 39, 201, 220, 399, 566, 630
AspLEI GCGC 3 cut(s) 508, 601, 665
AspS9I GGNCC 2 cut(s) 244, 566
AsuC2I CCSGG 4 cut(s) 38, 416, 492, 667
AsuHPI GGTGA 2 cut(s) 217, 448
AvaI CYCGRG 1 cut(s) 440
AvaII GGWCC 1 cut(s) 244
BanI GGYRCC 2 cut(s) 598, 662
BccI CCATC 5 cut(s) 40, 128, 140, 176, 320
BceAI ACGGC 1 cut(s) 449
BciT130I CCWGG 4 cut(s) 200, 242, 328, 367
BcnI CCSGG 4 cut(s) 38, 416, 492, 667
BcoDI GTCTC 3 cut(s) 149, 489, 506
BfoI RGCGCY 3 cut(s) 509, 602, 666
BglI GCCNNNNNGGC 1 cut(s) 526
BisI GCNGC 4 cut(s) 100, 103, 658, 661
BlsI GCNGC 4 cut(s) 101, 104, 659, 662
Bme1390I CCNGG 8 cut(s) 38, 200, 242, 328, 367, 416, 492, 667
Bme18I GGWCC 1 cut(s) 244
BmeT110I CYCGRG 1 cut(s) 440
BmgT120I GGNCC 2 cut(s) 244, 566
BmiI GGNNCC 6 cut(s) 322, 463, 556, 567, 600, 664
BmrFI CCNGG 8 cut(s) 38, 200, 242, 328, 367, 416, 492, 667
BpmI CTGGAG 2 cut(s) 530, 551
BpuEI CTTGAG 2 cut(s) 323, 545
BpuMI CCSGG 4 cut(s) 38, 416, 492, 667
BsaHI GRCGYC 4 cut(s) 26, 572, 599, 663
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 4 cut(s) 36, 326, 327, 490
BsaWI WCCGGW 3 cut(s) 262, 353, 458
Bsc4I CCNNNNNNNGG 4 cut(s) 37, 331, 385, 564
Bse118I RCCGGY 4 cut(s) 203, 397, 568, 601
BseBI CCWGG 4 cut(s) 200, 242, 328, 367
BseDI CCNNGG 4 cut(s) 36, 326, 327, 490
BseGI GGATG 2 cut(s) 32, 120
BseLI CCNNNNNNNGG 4 cut(s) 37, 331, 385, 564
BseRI GAGGAG 2 cut(s) 401, 665
BsgI GTGCAG 1 cut(s) 659
BshFI GGCC 6 cut(s) 41, 203, 222, 401, 568, 632
BshNI GGYRCC 2 cut(s) 598, 662
BsiHKCI CYCGRG 1 cut(s) 440
BslFI GGGAC 2 cut(s) 70, 601
BslI CCNNNNNNNGG 4 cut(s) 37, 331, 385, 564
BsmAI GTCTC 3 cut(s) 149, 489, 506
BsmFI GGGAC 2 cut(s) 70, 601
BsnI GGCC 6 cut(s) 41, 203, 222, 401, 568, 632
Bso31I GGTCTC 1 cut(s) 149
BsoBI CYCGRG 1 cut(s) 440
Bsp143I GATC 1 cut(s) 390
BspANI GGCC 6 cut(s) 41, 203, 222, 401, 568, 632
BspHI TCATGA 1 cut(s) 618
BspLI GGNNCC 6 cut(s) 322, 463, 556, 567, 600, 664
BspPI GGATC 1 cut(s) 385
BspT107I GGYRCC 2 cut(s) 598, 662
BspTNI GGTCTC 1 cut(s) 149
BsrBI CCGCTC 2 cut(s) 126, 657
BsrFI RCCGGY 4 cut(s) 203, 397, 568, 601
BssAI RCCGGY 4 cut(s) 203, 397, 568, 601
BssECI CCNNGG 4 cut(s) 36, 326, 327, 490
BssMI GATC 1 cut(s) 390
BssNI GRCGYC 4 cut(s) 26, 572, 599, 663
Bst2UI CCWGG 4 cut(s) 200, 242, 328, 367
Bst4CI ACNGT 2 cut(s) 160, 229
Bst6I CTCTTC 1 cut(s) 147
BstACI GRCGYC 4 cut(s) 26, 572, 599, 663
BstC8I GCNNGC 4 cut(s) 399, 570, 603, 630
BstF5I GGATG 2 cut(s) 32, 120
BstH2I RGCGCY 3 cut(s) 509, 602, 666
BstHHI GCGC 3 cut(s) 508, 601, 665
BstKTI GATC 1 cut(s) 393
BstMAI GTCTC 3 cut(s) 149, 489, 506
BstMBI GATC 1 cut(s) 390
BstMWI GCNNNNNNNGC 3 cut(s) 108, 219, 526
BstNI CCWGG 4 cut(s) 200, 242, 328, 367
BstSCI CCNGG 8 cut(s) 36, 198, 240, 326, 365, 414, 490, 665
BstX2I RGATCY 1 cut(s) 390
BstYI RGATCY 1 cut(s) 390
BsuRI GGCC 6 cut(s) 41, 203, 222, 401, 568, 632
BtsCI GGATG 2 cut(s) 32, 120
Cac8I GCNNGC 4 cut(s) 399, 570, 603, 630
CciI TCATGA 1 cut(s) 618
CfoI GCGC 3 cut(s) 508, 601, 665
Cfr10I RCCGGY 4 cut(s) 203, 397, 568, 601
Cfr13I GGNCC 2 cut(s) 244, 566
CseI GACGC 2 cut(s) 34, 561
CviAII CATG 2 cut(s) 349, 619
DinI GGCGCC 2 cut(s) 600, 664
DpnI GATC 1 cut(s) 392
DpnII GATC 1 cut(s) 390
EaeI YGGCCR 2 cut(s) 201, 399
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
EciI GGCGGA 2 cut(s) 98, 118
Eco147I AGGCCT 2 cut(s) 222, 632
Eco31I GGTCTC 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 244
Eco88I CYCGRG 1 cut(s) 440
EcoO109I RGGNCCY 1 cut(s) 244
EcoRII CCWGG 4 cut(s) 198, 240, 326, 365
EgeI GGCGCC 2 cut(s) 600, 664
EheI GGCGCC 2 cut(s) 600, 664
FaeI CATG 2 cut(s) 352, 622
FaiI YATR 4 cut(s) 350, 540, 620, 636
FaqI GGGAC 2 cut(s) 70, 601
FatI CATG 2 cut(s) 348, 618
FauI CCCGC 2 cut(s) 67, 402
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 4 cut(s) 100, 103, 658, 661
FokI GGATG 2 cut(s) 19, 107
Fsp4HI GCNGC 4 cut(s) 100, 103, 658, 661
GlaI GCGC 3 cut(s) 507, 600, 664
GluI GCNGC 4 cut(s) 100, 103, 658, 661
GsuI CTGGAG 2 cut(s) 530, 551
HaeII RGCGCY 3 cut(s) 509, 602, 666
HaeIII GGCC 6 cut(s) 41, 203, 222, 401, 568, 632
HgaI GACGC 2 cut(s) 34, 561
HhaI GCGC 3 cut(s) 508, 601, 665
Hin1I GRCGYC 4 cut(s) 26, 572, 599, 663
Hin1II CATG 2 cut(s) 352, 622
Hin6I GCGC 3 cut(s) 506, 599, 663
HinP1I GCGC 3 cut(s) 506, 599, 663
HinfI GANTC 2 cut(s) 266, 592
HphI GGTGA 2 cut(s) 217, 448
Hpy166II GTNNAC 2 cut(s) 304, 379
Hpy188III TCNNGA 6 cut(s) 172, 182, 424, 442, 586, 619
Hpy8I GTNNAC 2 cut(s) 304, 379
Hpy99I CGWCG 5 cut(s) 28, 164, 287, 526, 587
HpyAV CCTTC 1 cut(s) 421
HpyCH4III ACNGT 2 cut(s) 160, 229
HpyCH4V TGCA 3 cut(s) 348, 628, 640
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 219, 526
Hsp92I GRCGYC 4 cut(s) 26, 572, 599, 663
Hsp92II CATG 2 cut(s) 352, 622
HspAI GCGC 3 cut(s) 506, 599, 663
KasI GGCGCC 2 cut(s) 598, 662
KroI GCCGGC 3 cut(s) 397, 568, 601
KroNI GCCGGC 3 cut(s) 399, 570, 603
Kzo9I GATC 1 cut(s) 390
LmnI GCTCC 4 cut(s) 131, 461, 560, 610
MalI GATC 1 cut(s) 392
MbiI CCGCTC 2 cut(s) 126, 657
MboI GATC 1 cut(s) 390
MboII GAAGA 1 cut(s) 164
MflI RGATCY 1 cut(s) 390
MluCI AATT 2 cut(s) 236, 644
Mly113I GGCGCC 2 cut(s) 599, 663
MlyI GAGTC 1 cut(s) 260
MmeI TCCRAC 1 cut(s) 600
MreI CGCCGGCG 1 cut(s) 601
MroNI GCCGGC 3 cut(s) 397, 568, 601
MseI TTAA 1 cut(s) 405
MspR9I CCNGG 8 cut(s) 38, 200, 242, 328, 367, 416, 492, 667
MvaI CCWGG 4 cut(s) 200, 242, 328, 367
MwoI GCNNNNNNNGC 3 cut(s) 108, 219, 526
NaeI GCCGGC 3 cut(s) 399, 570, 603
NarI GGCGCC 2 cut(s) 599, 663
NciI CCSGG 4 cut(s) 38, 416, 492, 667
NdeII GATC 1 cut(s) 390
NgoMIV GCCGGC 3 cut(s) 397, 568, 601
NlaIII CATG 2 cut(s) 352, 622
NlaIV GGNNCC 6 cut(s) 322, 463, 556, 567, 600, 664
PaeR7I CTCGAG 1 cut(s) 440
PagI TCATGA 1 cut(s) 618
PasI CCCWGGG 1 cut(s) 327
PceI AGGCCT 2 cut(s) 222, 632
PcsI WCGNNNNNNNCGW 2 cut(s) 381, 447
PdiI GCCGGC 3 cut(s) 399, 570, 603
PfeI GAWTC 1 cut(s) 592
PfoI TCCNGGA 1 cut(s) 240
PkrI GCNGC 4 cut(s) 101, 104, 659, 662
PleI GAGTC 1 cut(s) 260
PluTI GGCGCC 2 cut(s) 602, 666
PpsI GAGTC 1 cut(s) 260
PpuMI RGGWCCY 1 cut(s) 244
Psp5II RGGWCCY 1 cut(s) 244
Psp6I CCWGG 4 cut(s) 198, 240, 326, 365
PspGI CCWGG 4 cut(s) 198, 240, 326, 365
PspN4I GGNNCC 6 cut(s) 322, 463, 556, 567, 600, 664
PspPI GGNCC 2 cut(s) 244, 566
PspPPI RGGWCCY 1 cut(s) 244
PsuI RGATCY 1 cut(s) 390
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 4 cut(s) 100, 103, 658, 661
Sau3AI GATC 1 cut(s) 390
Sau96I GGNCC 2 cut(s) 244, 566
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 8 cut(s) 38, 200, 242, 328, 367, 416, 492, 667
SetI ASST 7 cut(s) 198, 215, 249, 279, 441, 582, 615
SfoI GGCGCC 2 cut(s) 600, 664
Sfr274I CTCGAG 1 cut(s) 440
SgrAI CRCCGGYG 1 cut(s) 601
SinI GGWCC 1 cut(s) 244
SlaI CTCGAG 1 cut(s) 440
SmlI CTYRAG 3 cut(s) 338, 440, 560
SmoI CTYRAG 3 cut(s) 338, 440, 560
Sse9I AATT 2 cut(s) 236, 644
SseBI AGGCCT 2 cut(s) 222, 632
SspDI GGCGCC 2 cut(s) 598, 662
StuI AGGCCT 2 cut(s) 222, 632
StyD4I CCNGG 8 cut(s) 36, 198, 240, 326, 365, 414, 490, 665
TaaI ACNGT 2 cut(s) 160, 229
TaqI TCGA 6 cut(s) 23, 162, 183, 315, 441, 471
TasI AATT 2 cut(s) 236, 644
TauI GCSGC 4 cut(s) 102, 105, 660, 663
TfiI GAWTC 1 cut(s) 592
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TspDTI ATGAA 1 cut(s) 374
TspGWI ACGGA 1 cut(s) 448
VpaK11BI GGWCC 1 cut(s) 244
XhoI CTCGAG 1 cut(s) 440
XmiI GTMKAC 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.