RNA polymerase sigma factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G13730 |
| fragaria_vesca | FvH4_7g01630 |
| malus_domestica | MD02G1302300.v1.1 MD07G1021800.v1.1 |
| prunus_persica | Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 |
| pyrus_communis | pycom02g25460 pycom07g01650 |
| rosa_chinensis | RchiOBHm_Chr1g0317901 |
| rosa_laevigata | RLG00000029590 RLG00000030578 |
| rosa_multiflora | Rmu_sc0000654.1_g000054 Rmu_ssc0000008.1_g000049 |
| rosa_roxburghii | Rroxscaffold_4G00330140 |
| rosa_rugosa | Rorug01G0018500 |
| rosa_samantha | Rh1AG030000 Rh1BG026000 Rh1BG026100 Rh1CG028600 Rh1DG041500 |
| rosa_wichuraiana | Rw1G002260 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1123 |
| Acc65I | GGTACC | 1 cut(s) | 591 |
| AccB1I | GGYRCC | 1 cut(s) | 591 |
| AccI | GTMKAC | 1 cut(s) | 705 |
| AccII | CGCG | 2 cut(s) | 890, 944 |
| AciI | CCGC | 6 cut(s) | 30, 156, 888, 890, 958, 1068 |
| AclI | AACGTT | 1 cut(s) | 274 |
| AclWI | GGATC | 3 cut(s) | 665, 722, 912 |
| AcoI | YGGCCR | 1 cut(s) | 955 |
| AcsI | RAATTY | 3 cut(s) | 219, 427, 610 |
| AcuI | CTGAAG | 2 cut(s) | 306, 1172 |
| AfaI | GTAC | 5 cut(s) | 142, 401, 593, 981, 1215 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 344, 568, 628, 680, 732 |
| AflII | CTTAAG | 1 cut(s) | 730 |
| AgsI | TTSAA | 6 cut(s) | 425, 446, 610, 1133, 1198, 1234 |
| AleI | CACNNNNGTG | 1 cut(s) | 167 |
| Alw21I | GWGCWC | 1 cut(s) | 870 |
| Alw26I | GTCTC | 5 cut(s) | 51, 317, 951, 1109, 1168 |
| AlwI | GGATC | 3 cut(s) | 665, 722, 912 |
| AoxI | GGCC | 3 cut(s) | 723, 955, 1001 |
| ApeKI | GCWGC | 1 cut(s) | 646 |
| ApoI | RAATTY | 3 cut(s) | 219, 427, 610 |
| Asp718I | GGTACC | 1 cut(s) | 591 |
| AspLEI | GCGC | 1 cut(s) | 745 |
| AspS9I | GGNCC | 2 cut(s) | 934, 986 |
| AsuC2I | CCSGG | 1 cut(s) | 771 |
| AsuHPI | GGTGA | 4 cut(s) | 80, 170, 1027, 1183 |
| AvaII | GGWCC | 2 cut(s) | 934, 986 |
| BanI | GGYRCC | 1 cut(s) | 591 |
| BanII | GRGCYC | 1 cut(s) | 1107 |
| BauI | CACGAG | 1 cut(s) | 1080 |
| Bbv12I | GWGCWC | 1 cut(s) | 870 |
| BbvI | GCAGC | 1 cut(s) | 633 |
| BccI | CCATC | 3 cut(s) | 109, 734, 1006 |
| BceAI | ACGGC | 3 cut(s) | 159, 507, 807 |
| BciVI | GTATCC | 2 cut(s) | 677, 895 |
| BclI | TGATCA | 1 cut(s) | 198 |
| BcnI | CCSGG | 1 cut(s) | 771 |
| BcoDI | GTCTC | 5 cut(s) | 51, 317, 951, 1109, 1168 |
| BfaI | CTAG | 5 cut(s) | 753, 810, 899, 1071, 1251 |
| BfmI | CTRYAG | 3 cut(s) | 21, 165, 738 |
| BfrI | CTTAAG | 1 cut(s) | 730 |
| BfuI | GTATCC | 2 cut(s) | 677, 895 |
| BisI | GCNGC | 2 cut(s) | 647, 958 |
| BlsI | GCNGC | 2 cut(s) | 648, 959 |
| Bme1390I | CCNGG | 1 cut(s) | 771 |
| Bme18I | GGWCC | 2 cut(s) | 934, 986 |
| BmgT120I | GGNCC | 2 cut(s) | 934, 986 |
| BmiI | GGNNCC | 3 cut(s) | 282, 593, 987 |
| BmrFI | CCNGG | 1 cut(s) | 771 |
| BpuEI | CTTGAG | 1 cut(s) | 389 |
| BpuMI | CCSGG | 1 cut(s) | 771 |
| BsaJI | CCNNGG | 3 cut(s) | 595, 679, 888 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 52, 82 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 344, 568, 628, 680, 732 |
| Bse1I | ACTGG | 2 cut(s) | 477, 713 |
| Bse3DI | GCAATG | 2 cut(s) | 965, 1188 |
| BseDI | CCNNGG | 3 cut(s) | 595, 679, 888 |
| BseGI | GGATG | 1 cut(s) | 116 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 344, 568, 628, 680, 732 |
| BseMI | GCAATG | 2 cut(s) | 965, 1188 |
| BseMII | CTCAG | 3 cut(s) | 91, 198, 651 |
| BseNI | ACTGG | 2 cut(s) | 477, 713 |
| BseRI | GAGGAG | 4 cut(s) | 39, 259, 395, 1022 |
| BseXI | GCAGC | 1 cut(s) | 633 |
| Bsh1236I | CGCG | 2 cut(s) | 890, 944 |
| Bsh1285I | CGRYCG | 1 cut(s) | 679 |
| BshFI | GGCC | 3 cut(s) | 725, 957, 1003 |
| BshNI | GGYRCC | 1 cut(s) | 591 |
| BsiEI | CGRYCG | 1 cut(s) | 679 |
| BsiHKAI | GWGCWC | 1 cut(s) | 870 |
| BsiSI | CCGG | 1 cut(s) | 770 |
| BslFI | GGGAC | 3 cut(s) | 41, 999, 1104 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 344, 568, 628, 680, 732 |
| BsmAI | GTCTC | 5 cut(s) | 51, 317, 951, 1109, 1168 |
| BsmBI | CGTCTC | 2 cut(s) | 51, 951 |
| BsmFI | GGGAC | 3 cut(s) | 41, 999, 1104 |
| BsnI | GGCC | 3 cut(s) | 725, 957, 1003 |
| Bsp1286I | GDGCHC | 2 cut(s) | 870, 1107 |
| Bsp1407I | TGTACA | 1 cut(s) | 1213 |
| Bsp143I | GATC | 5 cut(s) | 198, 356, 670, 714, 917 |
| BspACI | CCGC | 6 cut(s) | 30, 156, 888, 890, 958, 1068 |
| BspANI | GGCC | 3 cut(s) | 725, 957, 1003 |
| BspCNI | CTCAG | 3 cut(s) | 90, 199, 652 |
| BspFNI | CGCG | 2 cut(s) | 890, 944 |
| BspLI | GGNNCC | 3 cut(s) | 282, 593, 987 |
| BspPI | GGATC | 3 cut(s) | 665, 722, 912 |
| BspT107I | GGYRCC | 1 cut(s) | 591 |
| BspTI | CTTAAG | 1 cut(s) | 730 |
| BsrDI | GCAATG | 2 cut(s) | 965, 1188 |
| BsrGI | TGTACA | 1 cut(s) | 1213 |
| BsrI | ACTGG | 2 cut(s) | 477, 713 |
| BssECI | CCNNGG | 3 cut(s) | 595, 679, 888 |
| BssMI | GATC | 5 cut(s) | 198, 356, 670, 714, 917 |
| BssSI | CACGAG | 1 cut(s) | 1080 |
| BssT1I | CCWWGG | 1 cut(s) | 595 |
| Bst2BI | CACGAG | 1 cut(s) | 1080 |
| Bst4CI | ACNGT | 2 cut(s) | 169, 563 |
| Bst6I | CTCTTC | 6 cut(s) | 236, 253, 285, 441, 849, 1128 |
| BstAFI | CTTAAG | 1 cut(s) | 730 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 800 |
| BstAUI | TGTACA | 1 cut(s) | 1213 |
| BstC8I | GCNNGC | 1 cut(s) | 304 |
| BstDEI | CTNAG | 6 cut(s) | 77, 137, 207, 660, 833, 1054 |
| BstDSI | CCRYGG | 1 cut(s) | 888 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 626 |
| BstF5I | GGATG | 1 cut(s) | 116 |
| BstFNI | CGCG | 2 cut(s) | 890, 944 |
| BstHHI | GCGC | 1 cut(s) | 745 |
| BstKTI | GATC | 5 cut(s) | 201, 359, 673, 717, 920 |
| BstMAI | GTCTC | 5 cut(s) | 51, 317, 951, 1109, 1168 |
| BstMBI | GATC | 5 cut(s) | 198, 356, 670, 714, 917 |
| BstMCI | CGRYCG | 1 cut(s) | 679 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 800 |
| BstNSI | RCATGY | 1 cut(s) | 781 |
| BstSCI | CCNGG | 1 cut(s) | 769 |
| BstSFI | CTRYAG | 3 cut(s) | 21, 165, 738 |
| BstUI | CGCG | 2 cut(s) | 890, 944 |
| BstV1I | GCAGC | 1 cut(s) | 633 |
| BstX2I | RGATCY | 1 cut(s) | 917 |
| BstYI | RGATCY | 1 cut(s) | 917 |
| BsuI | GTATCC | 2 cut(s) | 677, 895 |
| BsuRI | GGCC | 3 cut(s) | 725, 957, 1003 |
| BtgI | CCRYGG | 1 cut(s) | 888 |
| BtsCI | GGATG | 1 cut(s) | 116 |
| BtsIMutI | CAGTG | 2 cut(s) | 174, 484 |
| Cac8I | GCNNGC | 1 cut(s) | 304 |
| CfoI | GCGC | 1 cut(s) | 745 |
| Cfr13I | GGNCC | 2 cut(s) | 934, 986 |
| Cfr42I | CCGCGG | 1 cut(s) | 891 |
| CseI | GACGC | 1 cut(s) | 933 |
| Csp6I | GTAC | 5 cut(s) | 141, 400, 592, 980, 1214 |
| CviAII | CATG | 4 cut(s) | 778, 961, 1030, 1037 |
| CviQI | GTAC | 5 cut(s) | 141, 400, 592, 980, 1214 |
| DdeI | CTNAG | 6 cut(s) | 77, 137, 207, 660, 833, 1054 |
| DpnI | GATC | 5 cut(s) | 200, 358, 672, 716, 919 |
| DpnII | GATC | 5 cut(s) | 198, 356, 670, 714, 917 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1123 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1123 |
| EaeI | YGGCCR | 1 cut(s) | 955 |
| Eam1104I | CTCTTC | 6 cut(s) | 236, 253, 285, 441, 849, 1128 |
| EarI | CTCTTC | 6 cut(s) | 236, 253, 285, 441, 849, 1128 |
| Eco130I | CCWWGG | 1 cut(s) | 595 |
| Eco24I | GRGCYC | 1 cut(s) | 1107 |
| Eco47I | GGWCC | 2 cut(s) | 934, 986 |
| Eco57I | CTGAAG | 2 cut(s) | 306, 1172 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 626 |
| EcoRI | GAATTC | 1 cut(s) | 219 |
| EcoT14I | CCWWGG | 1 cut(s) | 595 |
| EcoT38I | GRGCYC | 1 cut(s) | 1107 |
| ErhI | CCWWGG | 1 cut(s) | 595 |
| Esp3I | CGTCTC | 2 cut(s) | 51, 951 |
| FaeI | CATG | 4 cut(s) | 781, 964, 1033, 1040 |
| FaqI | GGGAC | 3 cut(s) | 41, 999, 1104 |
| FatI | CATG | 4 cut(s) | 777, 960, 1029, 1036 |
| FbaI | TGATCA | 1 cut(s) | 198 |
| FblI | GTMKAC | 1 cut(s) | 705 |
| Fnu4HI | GCNGC | 2 cut(s) | 647, 958 |
| FokI | GGATG | 1 cut(s) | 103 |
| FriOI | GRGCYC | 1 cut(s) | 1107 |
| Fsp4HI | GCNGC | 2 cut(s) | 647, 958 |
| FspBI | CTAG | 5 cut(s) | 753, 810, 899, 1071, 1251 |
| GlaI | GCGC | 1 cut(s) | 744 |
| GluI | GCNGC | 2 cut(s) | 647, 958 |
| HaeIII | GGCC | 3 cut(s) | 725, 957, 1003 |
| HapII | CCGG | 1 cut(s) | 770 |
| HgaI | GACGC | 1 cut(s) | 933 |
| HhaI | GCGC | 1 cut(s) | 745 |
| Hin1II | CATG | 4 cut(s) | 781, 964, 1033, 1040 |
| Hin6I | GCGC | 1 cut(s) | 743 |
| HinP1I | GCGC | 1 cut(s) | 743 |
| HincII | GTYRAC | 3 cut(s) | 98, 789, 822 |
| HindII | GTYRAC | 3 cut(s) | 98, 789, 822 |
| HindIII | AAGCTT | 2 cut(s) | 134, 1154 |
| HinfI | GANTC | 6 cut(s) | 13, 85, 370, 939, 1076, 1117 |
| HpaI | GTTAAC | 1 cut(s) | 789 |
| HpaII | CCGG | 1 cut(s) | 770 |
| HphI | GGTGA | 4 cut(s) | 80, 170, 1027, 1183 |
| Hpy166II | GTNNAC | 4 cut(s) | 98, 706, 789, 822 |
| Hpy188I | TCNGA | 2 cut(s) | 80, 229 |
| Hpy188III | TCNNGA | 5 cut(s) | 354, 629, 674, 753, 1161 |
| Hpy8I | GTNNAC | 4 cut(s) | 98, 706, 789, 822 |
| Hpy99I | CGWCG | 2 cut(s) | 10, 13 |
| HpyAV | CCTTC | 5 cut(s) | 117, 231, 404, 626, 831 |
| HpyCH4III | ACNGT | 2 cut(s) | 169, 563 |
| HpyCH4IV | ACGT | 1 cut(s) | 274 |
| HpyCH4V | TGCA | 6 cut(s) | 506, 584, 616, 803, 863, 970 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 800 |
| HpyF3I | CTNAG | 6 cut(s) | 77, 137, 207, 660, 833, 1054 |
| HpySE526I | ACGT | 1 cut(s) | 274 |
| Hsp92II | CATG | 4 cut(s) | 781, 964, 1033, 1040 |
| HspAI | GCGC | 1 cut(s) | 743 |
| KpnI | GGTACC | 1 cut(s) | 595 |
| Ksp22I | TGATCA | 1 cut(s) | 198 |
| KspAI | GTTAAC | 1 cut(s) | 789 |
| KspI | CCGCGG | 1 cut(s) | 891 |
| Kzo9I | GATC | 5 cut(s) | 198, 356, 670, 714, 917 |
| LmnI | GCTCC | 6 cut(s) | 194, 280, 347, 413, 656, 907 |
| Lsp1109I | GCAGC | 1 cut(s) | 633 |
| MaeI | CTAG | 5 cut(s) | 753, 810, 899, 1071, 1251 |
| MaeII | ACGT | 1 cut(s) | 274 |
| MaeIII | GTNAC | 3 cut(s) | 158, 266, 557 |
| MalI | GATC | 5 cut(s) | 200, 358, 672, 716, 919 |
| MboI | GATC | 5 cut(s) | 198, 356, 670, 714, 917 |
| MflI | RGATCY | 1 cut(s) | 917 |
| MhlI | GDGCHC | 2 cut(s) | 870, 1107 |
| MluCI | AATT | 6 cut(s) | 219, 327, 427, 610, 764, 975 |
| MlyI | GAGTC | 4 cut(s) | 79, 379, 948, 1111 |
| MmeI | TCCRAC | 2 cut(s) | 325, 912 |
| MseI | TTAA | 2 cut(s) | 731, 788 |
| MslI | CAYNNNNRTG | 1 cut(s) | 167 |
| MspA1I | CMGCKG | 1 cut(s) | 890 |
| MspCI | CTTAAG | 1 cut(s) | 730 |
| MspI | CCGG | 1 cut(s) | 770 |
| MspR9I | CCNGG | 1 cut(s) | 771 |
| MvnI | CGCG | 2 cut(s) | 890, 944 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 800 |
| NciI | CCSGG | 1 cut(s) | 771 |
| NdeII | GATC | 5 cut(s) | 198, 356, 670, 714, 917 |
| NlaIII | CATG | 4 cut(s) | 781, 964, 1033, 1040 |
| NlaIV | GGNNCC | 3 cut(s) | 282, 593, 987 |
| NmuCI | GTSAC | 1 cut(s) | 158 |
| NspI | RCATGY | 1 cut(s) | 781 |
| OliI | CACNNNNGTG | 1 cut(s) | 167 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 559 |
| PfeI | GAWTC | 2 cut(s) | 13, 1076 |
| PflFI | GACNNNGTC | 1 cut(s) | 938 |
| PkrI | GCNGC | 2 cut(s) | 648, 959 |
| PleI | GAGTC | 4 cut(s) | 79, 378, 947, 1111 |
| PpsI | GAGTC | 4 cut(s) | 79, 378, 947, 1111 |
| Psp1406I | AACGTT | 1 cut(s) | 274 |
| PspN4I | GGNNCC | 3 cut(s) | 282, 593, 987 |
| PspPI | GGNCC | 2 cut(s) | 934, 986 |
| PsuI | RGATCY | 1 cut(s) | 917 |
| PsyI | GACNNNGTC | 1 cut(s) | 938 |
| RsaI | GTAC | 5 cut(s) | 142, 401, 593, 981, 1215 |
| RsaNI | GTAC | 5 cut(s) | 141, 400, 592, 980, 1214 |
| RseI | CAYNNNNRTG | 1 cut(s) | 167 |
| SacII | CCGCGG | 1 cut(s) | 891 |
| SaqAI | TTAA | 2 cut(s) | 731, 788 |
| SatI | GCNGC | 2 cut(s) | 647, 958 |
| Sau3AI | GATC | 5 cut(s) | 198, 356, 670, 714, 917 |
| Sau96I | GGNCC | 2 cut(s) | 934, 986 |
| SchI | GAGTC | 4 cut(s) | 79, 379, 948, 1111 |
| ScrFI | CCNGG | 1 cut(s) | 771 |
| SduI | GDGCHC | 2 cut(s) | 870, 1107 |
| SfcI | CTRYAG | 3 cut(s) | 21, 165, 738 |
| Sfr303I | CCGCGG | 1 cut(s) | 891 |
| SgrBI | CCGCGG | 1 cut(s) | 891 |
| SinI | GGWCC | 2 cut(s) | 934, 986 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 167 |
| SmlI | CTYRAG | 2 cut(s) | 404, 730 |
| SmoI | CTYRAG | 2 cut(s) | 404, 730 |
| Sse9I | AATT | 6 cut(s) | 219, 327, 427, 610, 764, 975 |
| SsiI | CCGC | 6 cut(s) | 30, 156, 888, 890, 958, 1068 |
| SspMI | CTAG | 5 cut(s) | 753, 810, 899, 1071, 1251 |
| StyD4I | CCNGG | 1 cut(s) | 769 |
| StyI | CCWWGG | 1 cut(s) | 595 |
| TaaI | ACNGT | 2 cut(s) | 169, 563 |
| TaiI | ACGT | 1 cut(s) | 277 |
| TaqI | TCGA | 1 cut(s) | 1160 |
| TaqII | GACCGA | 2 cut(s) | 693, 951 |
| TasI | AATT | 6 cut(s) | 219, 327, 427, 610, 764, 975 |
| TatI | WGTACW | 1 cut(s) | 1213 |
| TauI | GCSGC | 1 cut(s) | 960 |
| TfiI | GAWTC | 2 cut(s) | 13, 1076 |
| Tru1I | TTAA | 2 cut(s) | 731, 788 |
| Tru9I | TTAA | 2 cut(s) | 731, 788 |
| TscAI | CASTG | 2 cut(s) | 174, 484 |
| TseFI | GTSAC | 1 cut(s) | 158 |
| TseI | GCWGC | 1 cut(s) | 646 |
| Tsp45I | GTSAC | 1 cut(s) | 158 |
| TspDTI | ATGAA | 4 cut(s) | 468, 525, 1008, 1046 |
| TspGWI | ACGGA | 4 cut(s) | 33, 181, 1125, 1222 |
| TspRI | CASTG | 2 cut(s) | 174, 484 |
| Tth111I | GACNNNGTC | 1 cut(s) | 938 |
| Vha464I | CTTAAG | 1 cut(s) | 730 |
| VpaK11BI | GGWCC | 2 cut(s) | 934, 986 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 626 |
| XapI | RAATTY | 3 cut(s) | 219, 427, 610 |
| XbaI | TCTAGA | 1 cut(s) | 752 |
| XceI | RCATGY | 1 cut(s) | 781 |
| XmiI | GTMKAC | 1 cut(s) | 705 |
| XspI | CTAG | 5 cut(s) | 753, 810, 899, 1071, 1251 |