Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005329

Physical Location & Seq

Genomic Coordinates Reverse (-)

5411739 .. 5414724

Gene Structure 2986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG030000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGGATATGGCACCAAACACAAAATATCTCCAAAACACAACTTCCTTGGTACACAGTTCACTCATCACTCTTCTACTCTGCTGTATGGCCATCACCACTGGCATATGTTCATCACCAAACCAACCTCCAACTCTCCCCACACTTTCACTCTCAAACATCTCACCACTCAAAACCCACTTGCCTTTTCCCTCCTCCAAATTTGGCGCCAACTTAGTCTCCAACGATGCATTGGTCAATGGAGCTGCCGCGGAGGCAGTGGCGCTGGCACGCGCTGTGGCGGAGGTGACCAGAGATGCCGTGGCAGTGAGGGAAGGTATTAGTGAGGTTTGGAGTTGCAATGAGAGTGGGAATGAGAGTGGTGGTGGATTGATGGCGAGGAGGAAGAAGAGGAGGAGAAGGCGGAAAGGGTTGGAGTGTTTTGATGATGAGGAGAGGAAGAGGGAGTTTGAAGATGAGAGGGTTTCATTTGGGGTTGTGAGATATGGTTATCTGAGCCCAAGAGAGGAGGCAGAGTGCTGTCAGAGTCTCAAGGAGGGAGCAAAACTAGAATCTGAAAGAACAAGAGTCACAGAAGCTCAAGAGCATGAGCCAACTTCGAAACAGCTGGCAAATGTGATGAGGGTGAAGATGAGAAGTATAGATAAGGTTATCCGTAACAGAAGAGAGTCACAAGAAAGGATCATCAAGAGCTATCGAGGACTTGTTGTCTCTGTTGCCAGCAGTTATCAAGGGAAAGGATTAAGCTTGGAGGACCTCATTCAGCAGGAAGGGAGCATTGGACTTCTTCGAGGGGCAGAGAAGTTTGATCCTGAGAGAGGATTTAAATTATCAACATATGTGTATTGGTGGATTAGACAAGCTATCATCAGAGCCATAGAAAAGAAGTCTAGAATAATCAGATTACCAGGACACATTTGTGGAGTGATGGCAAAAATCACAAAAGCTAAAAATTCCTTCAACCAAAGATTTCACCGGCTGCCTAGTCACGAAGAAATTGCTGAAATGGTAAATATTCAAGCCTCAACTGTAAGACTTGTTTGTGAGAGAAGCAGACTCCCTCTTTCATTGGATCGAGTGGTGACTGATCAAGGTTGCATGGCACTCCAGGATATCATAAGAGGGCCGAATGAGATGATGCCAGAAACGATGCTTAGAAAACAGCTAATGAAGCAAGAGGTGGAGAAGCTTCTAAAGACGTTGAGTGATAGAGAAGCAAATGTATTGAGATTACACTTTGGACTAAATGGAGAGACCCCTCAGTCCTTTAAGGAGATAGGAAGATTGTTAGAACTTTCAAGGGAGAGGGTTCGACAGATCAACGGCATTGCATTATCAAAATTAAAGCAGACAAGTACTTTGGACAATCTAAAATTGTATATTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000988 GO:0000990 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016987 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:0104004 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:2000112 GO:2000142 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sigma70_r2 Sigma70_r3 Sigma70_r4

Protein Analysis

461

Amino Acids

52.01

Weight (kDa)

9.52

Isoelectric Point (pI)

50.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sigma70_r2	PF04542	228 - 297	2.4e-20	Sigma-70 region 2
Sigma70_r3	PF04539	310 - 382	2.1e-11	Sigma-70 region 3
Sigma70_r4	PF04545	396 - 449	5.8e-13	Sigma-70, region 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13730
fragaria_vesca	FvH4_7g01630
malus_domestica	MD02G1302300.v1.1 MD07G1021800.v1.1
prunus_persica	Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1
pyrus_communis	pycom02g25460 pycom07g01650
rosa_chinensis	RchiOBHm_Chr1g0317901
rosa_laevigata	RLG00000029590 RLG00000030578
rosa_multiflora	Rmu_sc0000654.1_g000054 Rmu_ssc0000008.1_g000049
rosa_roxburghii	Rroxscaffold_4G00330140
rosa_rugosa	Rorug01G0018500
rosa_samantha	Rh1AG030000 Rh1BG026000 Rh1BG026100 Rh1CG028600 Rh1DG041500
rosa_wichuraiana	Rw1G002260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1258
AccB1I	GGYRCC	2 cut(s)	10, 203
AccII	CGCG	2 cut(s)	248, 270
AciI	CCGC	4 cut(s)	246, 248, 278, 400
AclWI	GGATC	3 cut(s)	686, 800, 1077
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	2 cut(s)	197, 949
AcyI	GRCGYC	1 cut(s)	204
AfaI	GTAC	2 cut(s)	51, 1354
AfiI	CCNNNNNNNGG	2 cut(s)	502, 815
AgsI	TTSAA	4 cut(s)	449, 958, 1016, 1296
AhdI	GACNNNNNGTC	1 cut(s)	704
AjnI	CCWGG	2 cut(s)	904, 1104
AjuI	GAANNNNNNNTTGG	2 cut(s)	759, 791
AleI	CACNNNNGTG	1 cut(s)	915
AluBI	AGCT	9 cut(s)	242, 575, 604, 690, 744, 860, 944, 1162, 1186
AluI	AGCT	9 cut(s)	242, 575, 604, 690, 744, 860, 944, 1162, 1186
Alw26I	GTCTC	4 cut(s)	220, 530, 712, 1244
AlwI	GGATC	3 cut(s)	686, 800, 1077
AoxI	GGCC	2 cut(s)	87, 1121
ApeKI	GCWGC	2 cut(s)	242, 976
ApoI	RAATTY	2 cut(s)	197, 949
ArsI	GACNNNNNNTTYG	2 cut(s)	1339, 1371
AspLEI	GCGC	3 cut(s)	206, 262, 272
AspS9I	GGNCC	2 cut(s)	751, 1121
AsuHPI	GGTGA	7 cut(s)	85, 105, 153, 295, 634, 962, 1090
AsuII	TTCGAA	1 cut(s)	596
AvaII	GGWCC	1 cut(s)	751
BalI	TGGCCA	1 cut(s)	89
BanI	GGYRCC	2 cut(s)	10, 203
BanII	GRGCYC	1 cut(s)	497
BbvI	GCAGC	2 cut(s)	229, 963
BccI	CCATC	3 cut(s)	98, 364, 919
BceAI	ACGGC	2 cut(s)	281, 1336
BcgI	CGANNNNNNTGC	2 cut(s)	977, 1011
BciT130I	CCWGG	2 cut(s)	906, 1106
BclI	TGATCA	1 cut(s)	1084
BcoDI	GTCTC	4 cut(s)	220, 530, 712, 1244
BfaI	CTAG	3 cut(s)	545, 888, 981
BfoI	RGCGCY	2 cut(s)	207, 263
BglI	GCCNNNNNGGC	1 cut(s)	251
BisI	GCNGC	3 cut(s)	243, 246, 977
BlsI	GCNGC	3 cut(s)	244, 247, 978
BmcAI	AGTACT	1 cut(s)	1354
Bme1390I	CCNGG	2 cut(s)	906, 1106
Bme18I	GGWCC	1 cut(s)	751
BmeRI	GACNNNNNGTC	1 cut(s)	704
BmgT120I	GGNCC	2 cut(s)	751, 1121
BmiI	GGNNCC	2 cut(s)	12, 205
BmrFI	CCNGG	2 cut(s)	906, 1106
BmsI	GCATC	4 cut(s)	214, 283, 1125, 1137
BpmI	CTGGAG	1 cut(s)	1088
Bpu14I	TTCGAA	1 cut(s)	596
BpuEI	CTTGAG	2 cut(s)	512, 561
BsaHI	GRCGYC	1 cut(s)	204
BsaI	GGTCTC	1 cut(s)	1244
BsaJI	CCNNGG	3 cut(s)	45, 246, 297
BsaXI	ACNNNNNCTCC	4 cut(s)	200, 230, 497, 527
Bsc4I	CCNNNNNNNGG	2 cut(s)	502, 815
Bse118I	RCCGGY	1 cut(s)	972
Bse1I	ACTGG	1 cut(s)	103
Bse3DI	GCAATG	2 cut(s)	343, 1323
BseBI	CCWGG	2 cut(s)	906, 1106
BseDI	CCNNGG	3 cut(s)	45, 246, 297
BseLI	CCNNNNNNNGG	2 cut(s)	502, 815
BseMI	GCAATG	2 cut(s)	343, 1323
BseMII	CTCAG	3 cut(s)	482, 801, 1271
BseNI	ACTGG	1 cut(s)	103
BseRI	GAGGAG	6 cut(s)	181, 391, 403, 406, 443, 518
BseXI	GCAGC	2 cut(s)	229, 963
Bsh1236I	CGCG	2 cut(s)	248, 270
BshFI	GGCC	2 cut(s)	89, 1123
BshNI	GGYRCC	2 cut(s)	10, 203
BsiSI	CCGG	1 cut(s)	973
BslI	CCNNNNNNNGG	2 cut(s)	502, 815
BsmAI	GTCTC	4 cut(s)	220, 530, 712, 1244
BsnI	GGCC	2 cut(s)	89, 1123
Bso31I	GGTCTC	1 cut(s)	1244
Bsp119I	TTCGAA	1 cut(s)	596
Bsp1286I	GDGCHC	1 cut(s)	497
Bsp143I	GATC	5 cut(s)	678, 805, 1069, 1084, 1314
BspACI	CCGC	4 cut(s)	246, 248, 278, 400
BspANI	GGCC	2 cut(s)	89, 1123
BspCNI	CTCAG	3 cut(s)	483, 802, 1270
BspFNI	CGCG	2 cut(s)	248, 270
BspLI	GGNNCC	2 cut(s)	12, 205
BspPI	GGATC	3 cut(s)	686, 800, 1077
BspT104I	TTCGAA	1 cut(s)	596
BspT107I	GGYRCC	2 cut(s)	10, 203
BspTNI	GGTCTC	1 cut(s)	1244
BsrDI	GCAATG	2 cut(s)	343, 1323
BsrFI	RCCGGY	1 cut(s)	972
BsrI	ACTGG	1 cut(s)	103
BssAI	RCCGGY	1 cut(s)	972
BssECI	CCNNGG	3 cut(s)	45, 246, 297
BssMI	GATC	5 cut(s)	678, 805, 1069, 1084, 1314
BssNI	GRCGYC	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	2 cut(s)	906, 1106
Bst4CI	ACNGT	2 cut(s)	56, 1027
Bst6I	CTCTTC	4 cut(s)	75, 380, 431, 655
BstACI	GRCGYC	1 cut(s)	204
BstBI	TTCGAA	1 cut(s)	596
BstC8I	GCNNGC	4 cut(s)	264, 268, 606, 718
BstDEI	CTNAG	5 cut(s)	211, 491, 810, 1151, 1257
BstDSI	CCRYGG	2 cut(s)	246, 297
BstEII	GGTNACC	1 cut(s)	283
BstENI	CCTNNNNNAGG	1 cut(s)	813
BstFNI	CGCG	2 cut(s)	248, 270
BstH2I	RGCGCY	2 cut(s)	207, 263
BstHHI	GCGC	3 cut(s)	206, 262, 272
BstKTI	GATC	5 cut(s)	681, 808, 1072, 1087, 1317
BstMAI	GTCTC	4 cut(s)	220, 530, 712, 1244
BstMBI	GATC	5 cut(s)	678, 805, 1069, 1084, 1314
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 1168
BstNI	CCWGG	2 cut(s)	906, 1106
BstPI	GGTNACC	1 cut(s)	283
BstSCI	CCNGG	2 cut(s)	904, 1104
BstUI	CGCG	2 cut(s)	248, 270
BstV1I	GCAGC	2 cut(s)	229, 963
BsuRI	GGCC	2 cut(s)	89, 1123
BtgI	CCRYGG	2 cut(s)	246, 297
BtsI	GCAGTG	2 cut(s)	261, 309
BtsIMutI	CAGTG	3 cut(s)	96, 261, 309
Cac8I	GCNNGC	4 cut(s)	264, 268, 606, 718
CfoI	GCGC	3 cut(s)	206, 262, 272
Cfr10I	RCCGGY	1 cut(s)	972
Cfr13I	GGNCC	2 cut(s)	751, 1121
Cfr42I	CCGCGG	1 cut(s)	249
Csp6I	GTAC	2 cut(s)	50, 1353
CspCI	CAANNNNNGTGG	2 cut(s)	325, 360
CviAII	CATG	2 cut(s)	584, 1096
CviQI	GTAC	2 cut(s)	50, 1353
DdeI	CTNAG	5 cut(s)	211, 491, 810, 1151, 1257
DinI	GGCGCC	1 cut(s)	205
DpnI	GATC	5 cut(s)	680, 807, 1071, 1086, 1316
DpnII	GATC	5 cut(s)	678, 805, 1069, 1084, 1314
DraI	TTTAAA	1 cut(s)	823
DrdI	GACNNNNNNGTC	1 cut(s)	1258
DriI	GACNNNNNGTC	1 cut(s)	704
DseDI	GACNNNNNNGTC	1 cut(s)	1258
EaeI	YGGCCR	1 cut(s)	87
Eam1104I	CTCTTC	4 cut(s)	75, 380, 431, 655
Eam1105I	GACNNNNNGTC	1 cut(s)	704
EarI	CTCTTC	4 cut(s)	75, 380, 431, 655
EciI	GGCGGA	2 cut(s)	293, 415
Eco130I	CCWWGG	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	497
Eco31I	GGTCTC	1 cut(s)	1244
Eco32I	GATATC	1 cut(s)	1111
Eco47I	GGWCC	1 cut(s)	751
Eco91I	GGTNACC	1 cut(s)	283
EcoNI	CCTNNNNNAGG	1 cut(s)	813
EcoO109I	RGGNCCY	1 cut(s)	751
EcoO65I	GGTNACC	1 cut(s)	283
EcoRII	CCWGG	2 cut(s)	904, 1104
EcoRV	GATATC	1 cut(s)	1111
EcoT14I	CCWWGG	1 cut(s)	45
EcoT22I	ATGCAT	1 cut(s)	229
EcoT38I	GRGCYC	1 cut(s)	497
EgeI	GGCGCC	1 cut(s)	205
EheI	GGCGCC	1 cut(s)	205
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	2 cut(s)	587, 1099
FatI	CATG	2 cut(s)	583, 1095
FauNDI	CATATG	2 cut(s)	104, 835
FbaI	TGATCA	1 cut(s)	1084
Fnu4HI	GCNGC	3 cut(s)	243, 246, 977
FriOI	GRGCYC	1 cut(s)	497
Fsp4HI	GCNGC	3 cut(s)	243, 246, 977
FspBI	CTAG	3 cut(s)	545, 888, 981
GlaI	GCGC	3 cut(s)	205, 261, 271
GluI	GCNGC	3 cut(s)	243, 246, 977
GsuI	CTGGAG	1 cut(s)	1088
HaeII	RGCGCY	2 cut(s)	207, 263
HaeIII	GGCC	2 cut(s)	89, 1123
HapII	CCGG	1 cut(s)	973
HhaI	GCGC	3 cut(s)	206, 262, 272
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	2 cut(s)	587, 1099
Hin6I	GCGC	3 cut(s)	204, 260, 270
HinP1I	GCGC	3 cut(s)	204, 260, 270
HindIII	AAGCTT	2 cut(s)	742, 1184
HinfI	GANTC	5 cut(s)	523, 548, 564, 665, 1053
HpaII	CCGG	1 cut(s)	973
HphI	GGTGA	7 cut(s)	85, 105, 153, 295, 634, 962, 1090
Hpy166II	GTNNAC	2 cut(s)	52, 59
Hpy188I	TCNGA	5 cut(s)	492, 522, 553, 869, 899
Hpy188III	TCNNGA	5 cut(s)	578, 685, 809, 888, 986
Hpy8I	GTNNAC	2 cut(s)	52, 59
HpyAV	CCTTC	4 cut(s)	305, 390, 761, 964
HpyCH4III	ACNGT	2 cut(s)	56, 1027
HpyCH4IV	ACGT	1 cut(s)	1196
HpyCH4V	TGCA	4 cut(s)	227, 336, 1095, 1328
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 1168
HpyF3I	CTNAG	5 cut(s)	211, 491, 810, 1151, 1257
HpySE526I	ACGT	1 cut(s)	1196
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	2 cut(s)	587, 1099
HspAI	GCGC	3 cut(s)	204, 260, 270
KasI	GGCGCC	1 cut(s)	203
Ksp22I	TGATCA	1 cut(s)	1084
KspI	CCGCGG	1 cut(s)	249
Kzo9I	GATC	5 cut(s)	678, 805, 1069, 1084, 1314
LmnI	GCTCC	3 cut(s)	239, 536, 771
Lsp1109I	GCAGC	2 cut(s)	229, 963
LweI	GCATC	4 cut(s)	214, 283, 1125, 1137
MaeI	CTAG	3 cut(s)	545, 888, 981
MaeII	ACGT	1 cut(s)	1196
MaeIII	GTNAC	6 cut(s)	283, 565, 653, 666, 983, 1078
MalI	GATC	5 cut(s)	680, 807, 1071, 1086, 1316
MboI	GATC	5 cut(s)	678, 805, 1069, 1084, 1314
MhlI	GDGCHC	1 cut(s)	497
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	6 cut(s)	197, 824, 949, 993, 1337, 1370
MluNI	TGGCCA	1 cut(s)	89
Mly113I	GGCGCC	1 cut(s)	204
MlyI	GAGTC	4 cut(s)	532, 573, 674, 1047
MmeI	TCCRAC	3 cut(s)	152, 243, 390
Mox20I	TGGCCA	1 cut(s)	89
Mph1103I	ATGCAT	1 cut(s)	229
MscI	TGGCCA	1 cut(s)	89
MseI	TTAA	4 cut(s)	740, 822, 1266, 1340
MslI	CAYNNNNRTG	1 cut(s)	915
Msp20I	TGGCCA	1 cut(s)	89
MspA1I	CMGCKG	2 cut(s)	248, 604
MspI	CCGG	1 cut(s)	973
MspR9I	CCNGG	2 cut(s)	906, 1106
MvaI	CCWGG	2 cut(s)	906, 1106
MvnI	CGCG	2 cut(s)	248, 270
MwoI	GCNNNNNNNGC	2 cut(s)	251, 1168
NarI	GGCGCC	1 cut(s)	204
NdeI	CATATG	2 cut(s)	104, 835
NdeII	GATC	5 cut(s)	678, 805, 1069, 1084, 1314
NlaIII	CATG	2 cut(s)	587, 1099
NlaIV	GGNNCC	2 cut(s)	12, 205
NmuCI	GTSAC	5 cut(s)	283, 565, 666, 983, 1078
NsiI	ATGCAT	1 cut(s)	229
NspV	TTCGAA	1 cut(s)	596
OliI	CACNNNNGTG	1 cut(s)	915
PfeI	GAWTC	1 cut(s)	548
PfoI	TCCNGGA	1 cut(s)	1104
PkrI	GCNGC	3 cut(s)	244, 247, 978
PleI	GAGTC	4 cut(s)	531, 572, 673, 1047
PluTI	GGCGCC	1 cut(s)	207
PpsI	GAGTC	4 cut(s)	531, 572, 673, 1047
PpuMI	RGGWCCY	1 cut(s)	751
Psp5II	RGGWCCY	1 cut(s)	751
Psp6I	CCWGG	2 cut(s)	904, 1104
PspEI	GGTNACC	1 cut(s)	283
PspGI	CCWGG	2 cut(s)	904, 1104
PspN4I	GGNNCC	2 cut(s)	12, 205
PspPI	GGNCC	2 cut(s)	751, 1121
PspPPI	RGGWCCY	1 cut(s)	751
PvuII	CAGCTG	1 cut(s)	604
RsaI	GTAC	2 cut(s)	51, 1354
RsaNI	GTAC	2 cut(s)	50, 1353
RseI	CAYNNNNRTG	1 cut(s)	915
SacII	CCGCGG	1 cut(s)	249
SaqAI	TTAA	4 cut(s)	740, 822, 1266, 1340
SatI	GCNGC	3 cut(s)	243, 246, 977
Sau3AI	GATC	5 cut(s)	678, 805, 1069, 1084, 1314
Sau96I	GGNCC	2 cut(s)	751, 1121
ScaI	AGTACT	1 cut(s)	1354
SchI	GAGTC	4 cut(s)	532, 573, 674, 1047
ScrFI	CCNGG	2 cut(s)	906, 1106
SduI	GDGCHC	1 cut(s)	497
SfaNI	GCATC	4 cut(s)	214, 283, 1125, 1137
SfoI	GGCGCC	1 cut(s)	205
Sfr303I	CCGCGG	1 cut(s)	249
SfuI	TTCGAA	1 cut(s)	596
SgrBI	CCGCGG	1 cut(s)	249
SinI	GGWCC	1 cut(s)	751
SmiI	ATTTAAAT	1 cut(s)	823
SmiMI	CAYNNNNRTG	1 cut(s)	915
SmlI	CTYRAG	2 cut(s)	527, 576
SmoI	CTYRAG	2 cut(s)	527, 576
Sse9I	AATT	6 cut(s)	197, 824, 949, 993, 1337, 1370
SsiI	CCGC	4 cut(s)	246, 248, 278, 400
SspDI	GGCGCC	1 cut(s)	203
SspI	AATATT	1 cut(s)	1012
SspMI	CTAG	3 cut(s)	545, 888, 981
StyD4I	CCNGG	2 cut(s)	904, 1104
StyI	CCWWGG	1 cut(s)	45
SwaI	ATTTAAAT	1 cut(s)	823
TaaI	ACNGT	2 cut(s)	56, 1027
TaiI	ACGT	1 cut(s)	1199
TaqI	TCGA	5 cut(s)	596, 694, 787, 1072, 1309
TasI	AATT	6 cut(s)	197, 824, 949, 993, 1337, 1370
TatI	WGTACW	1 cut(s)	1352
TauI	GCSGC	1 cut(s)	248
TfiI	GAWTC	1 cut(s)	548
Tru1I	TTAA	4 cut(s)	740, 822, 1266, 1340
Tru9I	TTAA	4 cut(s)	740, 822, 1266, 1340
TscAI	CASTG	3 cut(s)	103, 261, 309
TseFI	GTSAC	5 cut(s)	283, 565, 666, 983, 1078
TseI	GCWGC	2 cut(s)	242, 976
Tsp45I	GTSAC	5 cut(s)	283, 565, 666, 983, 1078
TspDTI	ATGAA	4 cut(s)	99, 453, 1053, 1181
TspGWI	ACGGA	1 cut(s)	641
TspRI	CASTG	3 cut(s)	103, 261, 309
VpaK11BI	GGWCC	1 cut(s)	751
XagI	CCTNNNNNAGG	1 cut(s)	813
XapI	RAATTY	2 cut(s)	197, 949
XbaI	TCTAGA	1 cut(s)	887
XcmI	CCANNNNNNNNNTGG	2 cut(s)	226, 295
XspI	CTAG	3 cut(s)	545, 888, 981
ZrmI	AGTACT	1 cut(s)	1354
Zsp2I	ATGCAT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.