Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005329

Physical Location & Seq

Genomic Coordinates Reverse (-)

1297717 .. 1300662

Gene Structure 2946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g01650.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGACTCACACTTCGACTCGACTCTCCACGGCTGAGGCGCTGGCACTGGCCCGGGCTGCCGTGGTGGCGGCCAGAGACGCTGCAGCGGTGAGGGATGAGATTGTGGAGGCTTGGAGTTGTAGGGAGAGTGGGAATGGGAGTGGTGGGTTGGTGGTGAGGAGGAAGAGGAGGAGGAAAAGGAGAAAAGGGTTGGAGGGTTTGGATGAGGAGAGGGGGAGGGGTGTTGGAGATGGAAAGTTGTCGTTTGGGTTTGTGAGATGTGGGCATCTGAACCCAAAAGAAGAAGCTGAATGCTGTCTCAATCTCAAGGTACTAATTTTCCTTGGTTCTTTTATGGCAAATTTGTACTGGTGCTTTGTAAGAAAAGAGTCACAAGAAAGGATCATCAGGAGCTACAGGGGACTCATTGTCTCTGTTTCCAGCAGTTATCAAGGCAAATGTCTAAGCTTTCAAGACCTCATTCAGGTTCCTACACCTTTTTACTCCTGTCCAACACTTTCCGTAAGTGGATGGAAATTATCAATGTACATCGACTGGTGGATCAGGCAAGCTATTATCAGAGCCCTAGACAACAAGTCTAGAATAATCAGATTACCAGTAAACATATGCGGTATGATGGCAAAAATTACAAAAGCTAAAAATTCCTTCAATCAAAGATTCAAGCGGCTGCCTACTCATGATGAAATTGCTGAAGTGGTCAATGTGCCTGCCACAACTGTAAATCTTGTTTGCGACAGGAGCAGACCGCTGATTTCATTGGATCGAGTGGTAACTTTTCGAGGTTGCATGTCACTGCAGGAGATGATACCTGAAAAGATGCTTACAAAACAGCTAATGAAGCAGGAGGTCGAGAAGCTTCTGAAGAAGCTGAGCAATAGAGAAGCATATAAGGTTCGACAGATTAATCAGATTAATGGAATTGCGTTATCAAAGTTAAAGCATACTAGTACTTTCAACAATCTAAAATTGTATATTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000988 GO:0000990 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016987 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:0104004 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:2000112 GO:2000142 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sigma70_r2 Sigma70_r3 Sigma70_r4

Protein Analysis

327

Amino Acids

37.02

Weight (kDa)

10.01

Isoelectric Point (pI)

45.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13730
fragaria_vesca	FvH4_7g01630
malus_domestica	MD02G1302300.v1.1 MD07G1021800.v1.1
prunus_persica	Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1
pyrus_communis	pycom02g25460 pycom07g01650
rosa_chinensis	RchiOBHm_Chr1g0317901
rosa_laevigata	RLG00000029590 RLG00000030578
rosa_multiflora	Rmu_sc0000654.1_g000054 Rmu_ssc0000008.1_g000049
rosa_roxburghii	Rroxscaffold_4G00330140
rosa_rugosa	Rorug01G0018500
rosa_samantha	Rh1AG030000 Rh1BG026000 Rh1BG026100 Rh1CG028600 Rh1DG041500
rosa_wichuraiana	Rw1G002260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	68, 86, 609, 664, 746
AclWI	GGATC	3 cut(s)	389, 548, 768
AcoI	YGGCCR	1 cut(s)	69
AcsI	RAATTY	2 cut(s)	340, 640
AcuI	CTGAAG	2 cut(s)	711, 881
AfaI	GTAC	4 cut(s)	312, 347, 527, 949
AfiI	CCNNNNNNNGG	1 cut(s)	463
AgsI	TTSAA	4 cut(s)	452, 649, 661, 955
AhdI	GACNNNNNGTC	2 cut(s)	407, 574
AhlI	ACTAGT	1 cut(s)	944
AluBI	AGCT	8 cut(s)	287, 393, 447, 551, 635, 832, 856, 868
AluI	AGCT	8 cut(s)	287, 393, 447, 551, 635, 832, 856, 868
Alw26I	GTCTC	3 cut(s)	69, 302, 415
AlwI	GGATC	3 cut(s)	389, 548, 768
Ama87I	CYCGRG	1 cut(s)	51
AoxI	GGCC	2 cut(s)	48, 69
ApeKI	GCWGC	4 cut(s)	56, 80, 83, 667
ApoI	RAATTY	2 cut(s)	340, 640
ArsI	GACNNNNNNTTYG	1 cut(s)	27
AseI	ATTAAT	2 cut(s)	903, 912
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	1 cut(s)	49
AsuC2I	CCSGG	2 cut(s)	52, 53
AsuHPI	GGTGA	2 cut(s)	100, 166
AvaI	CYCGRG	1 cut(s)	51
BanII	GRGCYC	1 cut(s)	565
BbvCI	CCTCAGC	1 cut(s)	33
BbvI	GCAGC	4 cut(s)	43, 67, 95, 654
BccI	CCATC	3 cut(s)	224, 504, 610
BceAI	ACGGC	2 cut(s)	44, 45
BcnI	CCSGG	2 cut(s)	52, 53
BcoDI	GTCTC	3 cut(s)	69, 302, 415
BcuI	ACTAGT	1 cut(s)	944
BfaI	CTAG	3 cut(s)	566, 579, 945
BfmI	CTRYAG	3 cut(s)	81, 394, 794
BfoI	RGCGCY	1 cut(s)	41
BglI	GCCNNNNNGGC	1 cut(s)	65
BisI	GCNGC	6 cut(s)	57, 69, 81, 84, 665, 668
BlpI	GCTNAGC	1 cut(s)	869
BlsI	GCNGC	6 cut(s)	58, 70, 82, 85, 666, 669
BmcAI	AGTACT	1 cut(s)	949
Bme1390I	CCNGG	2 cut(s)	52, 53
BmeRI	GACNNNNNGTC	2 cut(s)	407, 574
BmeT110I	CYCGRG	1 cut(s)	51
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	1 cut(s)	468
BmrFI	CCNGG	2 cut(s)	52, 53
BmsI	GCATC	2 cut(s)	274, 807
Bpu10I	CCTNAGC	1 cut(s)	33
Bpu1102I	GCTNAGC	1 cut(s)	869
BpuEI	CTTGAG	1 cut(s)	290
BpuMI	CCSGG	2 cut(s)	52, 53
BsaJI	CCNNGG	4 cut(s)	27, 51, 60, 322
Bsc4I	CCNNNNNNNGG	1 cut(s)	463
Bse1I	ACTGG	4 cut(s)	51, 353, 539, 596
BseDI	CCNNGG	4 cut(s)	27, 51, 60, 322
BseGI	GGATG	3 cut(s)	100, 208, 515
BseLI	CCNNNNNNNGG	1 cut(s)	463
BseMII	CTCAG	2 cut(s)	24, 860
BseNI	ACTGG	4 cut(s)	51, 353, 539, 596
BseRI	GAGGAG	4 cut(s)	172, 181, 184, 221
BseXI	GCAGC	4 cut(s)	43, 67, 95, 654
BshFI	GGCC	2 cut(s)	50, 71
BsiHKCI	CYCGRG	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	52
BslFI	GGGAC	1 cut(s)	414
BslI	CCNNNNNNNGG	1 cut(s)	463
BsmAI	GTCTC	3 cut(s)	69, 302, 415
BsmBI	CGTCTC	1 cut(s)	69
BsmFI	GGGAC	1 cut(s)	414
BsmI	GAATGC	1 cut(s)	296
BsnI	GGCC	2 cut(s)	50, 71
BsoBI	CYCGRG	1 cut(s)	51
Bsp1286I	GDGCHC	1 cut(s)	565
Bsp1407I	TGTACA	1 cut(s)	525
Bsp143I	GATC	3 cut(s)	381, 540, 760
Bsp1720I	GCTNAGC	1 cut(s)	869
BspACI	CCGC	5 cut(s)	68, 86, 609, 664, 746
BspANI	GGCC	2 cut(s)	50, 71
BspCNI	CTCAG	2 cut(s)	25, 861
BspHI	TCATGA	1 cut(s)	676
BspLI	GGNNCC	1 cut(s)	468
BspMAI	CTGCAG	2 cut(s)	85, 798
BspPI	GGATC	3 cut(s)	389, 548, 768
BsrGI	TGTACA	1 cut(s)	525
BsrI	ACTGG	4 cut(s)	51, 353, 539, 596
BssECI	CCNNGG	4 cut(s)	27, 51, 60, 322
BssMI	GATC	3 cut(s)	381, 540, 760
BssT1I	CCWWGG	1 cut(s)	322
Bst4CI	ACNGT	1 cut(s)	718
Bst6I	CTCTTC	1 cut(s)	158
BstAUI	TGTACA	1 cut(s)	525
BstC8I	GCNNGC	3 cut(s)	42, 549, 708
BstDEI	CTNAG	3 cut(s)	33, 443, 869
BstDSI	CCRYGG	2 cut(s)	27, 60
BstENI	CCTNNNNNAGG	1 cut(s)	461
BstF5I	GGATG	3 cut(s)	100, 208, 515
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	3 cut(s)	384, 543, 763
BstMAI	GTCTC	3 cut(s)	69, 302, 415
BstMBI	GATC	3 cut(s)	381, 540, 760
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 65, 77, 738, 838
BstNSI	RCATGY	1 cut(s)	790
BstSCI	CCNGG	2 cut(s)	50, 51
BstSFI	CTRYAG	3 cut(s)	81, 394, 794
BstV1I	GCAGC	4 cut(s)	43, 67, 95, 654
BsuRI	GGCC	2 cut(s)	50, 71
BtgI	CCRYGG	2 cut(s)	27, 60
BtsCI	GGATG	3 cut(s)	100, 208, 515
BtsI	GCAGTG	1 cut(s)	791
BtsIMutI	CAGTG	2 cut(s)	44, 791
Cac8I	GCNNGC	3 cut(s)	42, 549, 708
CciI	TCATGA	1 cut(s)	676
CfoI	GCGC	1 cut(s)	40
Cfr13I	GGNCC	1 cut(s)	49
Cfr9I	CCCGGG	1 cut(s)	51
CseI	GACGC	1 cut(s)	86
Csp6I	GTAC	4 cut(s)	311, 346, 526, 948
CviAII	CATG	2 cut(s)	677, 787
CviQI	GTAC	4 cut(s)	311, 346, 526, 948
DdeI	CTNAG	3 cut(s)	33, 443, 869
DpnI	GATC	3 cut(s)	383, 542, 762
DpnII	GATC	3 cut(s)	381, 540, 760
DriI	GACNNNNNGTC	2 cut(s)	407, 574
EaeI	YGGCCR	1 cut(s)	69
Eam1104I	CTCTTC	1 cut(s)	158
Eam1105I	GACNNNNNGTC	2 cut(s)	407, 574
EarI	CTCTTC	1 cut(s)	158
Eco130I	CCWWGG	1 cut(s)	322
Eco24I	GRGCYC	1 cut(s)	565
Eco57I	CTGAAG	2 cut(s)	711, 881
Eco88I	CYCGRG	1 cut(s)	51
EcoNI	CCTNNNNNAGG	1 cut(s)	461
EcoT14I	CCWWGG	1 cut(s)	322
EcoT38I	GRGCYC	1 cut(s)	565
ErhI	CCWWGG	1 cut(s)	322
Esp3I	CGTCTC	1 cut(s)	69
FaeI	CATG	2 cut(s)	680, 790
FaqI	GGGAC	1 cut(s)	414
FatI	CATG	2 cut(s)	676, 786
FauNDI	CATATG	1 cut(s)	605
Fnu4HI	GCNGC	6 cut(s)	57, 69, 81, 84, 665, 668
FokI	GGATG	3 cut(s)	107, 215, 522
FriOI	GRGCYC	1 cut(s)	565
Fsp4HI	GCNGC	6 cut(s)	57, 69, 81, 84, 665, 668
FspBI	CTAG	3 cut(s)	566, 579, 945
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	6 cut(s)	57, 69, 81, 84, 665, 668
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	2 cut(s)	50, 71
HapII	CCGG	1 cut(s)	52
HgaI	GACGC	1 cut(s)	86
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	2 cut(s)	680, 790
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HindIII	AAGCTT	2 cut(s)	445, 854
HinfI	GANTC	6 cut(s)	4, 16, 21, 368, 402, 657
HpaII	CCGG	1 cut(s)	52
HphI	GGTGA	2 cut(s)	100, 166
Hpy166II	GTNNAC	1 cut(s)	601
Hpy188I	TCNGA	5 cut(s)	270, 560, 590, 861, 909
Hpy188III	TCNNGA	5 cut(s)	388, 452, 579, 677, 850
Hpy8I	GTNNAC	1 cut(s)	601
HpyAV	CCTTC	1 cut(s)	655
HpyCH4III	ACNGT	1 cut(s)	718
HpyCH4V	TGCA	3 cut(s)	83, 786, 796
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 65, 77, 738, 838
HpyF3I	CTNAG	3 cut(s)	33, 443, 869
Hsp92II	CATG	2 cut(s)	680, 790
HspAI	GCGC	1 cut(s)	38
Kzo9I	GATC	3 cut(s)	381, 540, 760
LmnI	GCTCC	2 cut(s)	390, 738
Lsp1109I	GCAGC	4 cut(s)	43, 67, 95, 654
LweI	GCATC	2 cut(s)	274, 807
MaeI	CTAG	3 cut(s)	566, 579, 945
MaeIII	GTNAC	3 cut(s)	369, 769, 789
MalI	GATC	3 cut(s)	383, 542, 762
MboI	GATC	3 cut(s)	381, 540, 760
MboII	GAAGA	3 cut(s)	175, 293, 874
MhlI	GDGCHC	1 cut(s)	565
MluCI	AATT	8 cut(s)	315, 340, 515, 624, 640, 684, 918, 965
MlyI	GAGTC	4 cut(s)	10, 15, 377, 396
MmeI	TCCRAC	3 cut(s)	171, 205, 515
MseI	TTAA	3 cut(s)	903, 912, 935
MspA1I	CMGCKG	2 cut(s)	86, 748
MspI	CCGG	1 cut(s)	52
MspR9I	CCNGG	2 cut(s)	52, 53
Mva1269I	GAATGC	1 cut(s)	296
MwoI	GCNNNNNNNGC	5 cut(s)	56, 65, 77, 738, 838
NciI	CCSGG	2 cut(s)	52, 53
NdeI	CATATG	1 cut(s)	605
NdeII	GATC	3 cut(s)	381, 540, 760
NlaIII	CATG	2 cut(s)	680, 790
NlaIV	GGNNCC	1 cut(s)	468
NmuCI	GTSAC	2 cut(s)	369, 789
NspI	RCATGY	1 cut(s)	790
PagI	TCATGA	1 cut(s)	676
PctI	GAATGC	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	657
PkrI	GCNGC	6 cut(s)	58, 70, 82, 85, 666, 669
PleI	GAGTC	4 cut(s)	10, 15, 376, 396
PpsI	GAGTC	4 cut(s)	10, 15, 376, 396
PshBI	ATTAAT	2 cut(s)	903, 912
PspN4I	GGNNCC	1 cut(s)	468
PspPI	GGNCC	1 cut(s)	49
PstI	CTGCAG	2 cut(s)	85, 798
RsaI	GTAC	4 cut(s)	312, 347, 527, 949
RsaNI	GTAC	4 cut(s)	311, 346, 526, 948
SaqAI	TTAA	3 cut(s)	903, 912, 935
SatI	GCNGC	6 cut(s)	57, 69, 81, 84, 665, 668
Sau3AI	GATC	3 cut(s)	381, 540, 760
Sau96I	GGNCC	1 cut(s)	49
ScaI	AGTACT	1 cut(s)	949
SchI	GAGTC	4 cut(s)	10, 15, 377, 396
ScrFI	CCNGG	2 cut(s)	52, 53
SduI	GDGCHC	1 cut(s)	565
SfaNI	GCATC	2 cut(s)	274, 807
SfcI	CTRYAG	3 cut(s)	81, 394, 794
SmaI	CCCGGG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
SpeI	ACTAGT	1 cut(s)	944
SrfI	GCCCGGGC	1 cut(s)	53
Sse9I	AATT	8 cut(s)	315, 340, 515, 624, 640, 684, 918, 965
SsiI	CCGC	5 cut(s)	68, 86, 609, 664, 746
SspMI	CTAG	3 cut(s)	566, 579, 945
StyD4I	CCNGG	2 cut(s)	50, 51
StyI	CCWWGG	1 cut(s)	322
TaaI	ACNGT	1 cut(s)	718
TaqI	TCGA	7 cut(s)	14, 19, 531, 763, 778, 849, 895
TasI	AATT	8 cut(s)	315, 340, 515, 624, 640, 684, 918, 965
TatI	WGTACW	3 cut(s)	345, 525, 947
TauI	GCSGC	2 cut(s)	71, 667
TfiI	GAWTC	1 cut(s)	657
Tru1I	TTAA	3 cut(s)	903, 912, 935
Tru9I	TTAA	3 cut(s)	903, 912, 935
TscAI	CASTG	2 cut(s)	51, 798
TseFI	GTSAC	2 cut(s)	369, 789
TseI	GCWGC	4 cut(s)	56, 80, 83, 667
Tsp45I	GTSAC	2 cut(s)	369, 789
TspDTI	ATGAA	3 cut(s)	696, 744, 851
TspGWI	ACGGA	1 cut(s)	490
TspMI	CCCGGG	1 cut(s)	51
TspRI	CASTG	2 cut(s)	51, 798
VspI	ATTAAT	2 cut(s)	903, 912
XagI	CCTNNNNNAGG	1 cut(s)	461
XapI	RAATTY	2 cut(s)	340, 640
XbaI	TCTAGA	1 cut(s)	578
XceI	RCATGY	1 cut(s)	790
XmaI	CCCGGG	1 cut(s)	51
XspI	CTAG	3 cut(s)	566, 579, 945
ZrmI	AGTACT	1 cut(s)	949

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.