Prupe.2G021900_v2.0.a1

RNA polymerase sigma factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
2137413 .. 2141024
3612 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G021900.9

Sequence Viewer

Length: 1323 bp
ATGGCCATCACCACCAGCATTTGTTCGTCACCAAACCAACCACCAATTCTCCCAACACTTTCACTCCCAACCATCCCATTCACACCACTCAAAACCCACCACCCTCTCCAACTCCACTTGCCTTTTCCCTCTTCTTCCTCCAAATCTGGTGGCAATTTAGTCTCCAATGACGCATTGGCCATTGCAGCAGCTGCCGAGGCACTGGTCCTGGCCCGGGCTGCCGTGGAGGCGGCCATAGACGCTGTGGCGGTGACGGAAGACATTGGTGAGGTTTGGAGTTGCTGGGAGAGTGGGAATGAGAGTGGTGGACTGGTGGCGAGGAGGAAGAGGAGGAGGAAAAGGAGAAAAGGGTTGGAGGCTTTGGATGAGGAGATGAAGAGGGATGTTGAAGATGGAATGGTGTCATTTGGGTTTGTGAGATATGAACATCTGAGCCCAAGAGAAGAAGCAGAATGCTGTCTGAGTCTCAAGGAGGGAGCAAGACTAGAATCAGAAAGGTTCAGAGTTGTAGAAGCTCAAAAGCATGAGCCAACCTCAAAACAGTTGGCCAAGGCAATGGGAATGAAGATGAGAAGTATAGATAAGGTGCTTTGTAAGAGAAGAGAGTCACAAGAAAAGATCATCAGGAGCTACCGGGGACTTGTTGTCTCTGTTGCCAGCAGTTATCAAGGGAAAGGATTAAGCTTTCAAGACCTCATTCAGGAAGGGAGCATTGGTCTTCTTCGAGGGGCAGAAAAGTTTGATCATGAGCGAGAATGGAAGTTATCAACATATGTGTACTGGTGGATTAGGCAAGCTATTATCAGAGCCATAGAAAACAAGTCTAGAATAATCAGATTACCAGGACACGTGTGCGGCATGATGGCAAAAATCACAAAAGCTCAAAATTCCTTGAACCAAAGATTTCAGCGGCTGCCTAGCCATGATGAAATTGCTGAAGTGATCAAAGTGAATGCTTCAACCGTAAAGCTTGTTTGTGAGAGGAGCAGACCCCCAATTTCATTGGATAGAGTGGCAACTGTTCGAGGTTCCATGACACTGCAGGAGATCATACAAGGGCCAGAGGAGATGATGCCAGAAAAGATGCTTATAAGGCAGCTAATGAAGCAAGAGGTCGAGAAGCTTCTGAAGACGCTGAGTGATAGAGAAGCAAATGTATTGAGATTACACTTTGGACTCAATGGAGAGAGCCCTCAGTCTTTTGAGGAGATAGGAAGACTGTTAAAGCTTTCGCGGGAGAGGGTTCGACAGATAAATGGAATTGCATTATCAAAATTAAGGCAGACTAGTATTTTGGACAATCTAAAATTGTATATTGTATAG

Protein Analysis

441

Amino Acids

49.55

Weight (kDa)

9.51

Isoelectric Point (pI)

53.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1091
AccII CGCG 1 cut(s) 1234
AciI CCGC 5 cut(s) 230, 248, 855, 910, 1234
AcoI YGGCCR 4 cut(s) 3, 177, 231, 546
AcsI RAATTY 1 cut(s) 886
AcuI CTGAAG 2 cut(s) 957, 1148
AcvI CACGTG 1 cut(s) 850
AfaI GTAC 1 cut(s) 779
AfiI CCNNNNNNNGG 2 cut(s) 214, 700
AflIII ACRYGT 2 cut(s) 847, 849
AgsI TTSAA 4 cut(s) 389, 689, 895, 960
AhdI GACNNNNNGTC 1 cut(s) 644
AhlI ACTAGT 1 cut(s) 1286
AjnI CCWGG 2 cut(s) 207, 841
AjuI GAANNNNNNNTTGG 4 cut(s) 30, 62, 696, 728
Alw26I GTCTC 3 cut(s) 166, 470, 652
AlwNI CAGNNNCTG 2 cut(s) 191, 913
Ama87I CYCGRG 1 cut(s) 213
AoxI GGCC 6 cut(s) 3, 177, 210, 231, 546, 1058
ApeKI GCWGC 6 cut(s) 185, 188, 191, 218, 913, 1096
ApoI RAATTY 1 cut(s) 886
ArsI GACNNNNNNTTYG 2 cut(s) 1276, 1308
AspS9I GGNCC 3 cut(s) 205, 211, 1058
AsuC2I CCSGG 3 cut(s) 214, 215, 635
AsuHPI GGTGA 3 cut(s) 21, 262, 278
AvaI CYCGRG 1 cut(s) 213
AvaII GGWCC 1 cut(s) 205
BalI TGGCCA 3 cut(s) 5, 179, 548
BanII GRGCYC 2 cut(s) 437, 1193
BbrPI CACGTG 1 cut(s) 850
BbsI GAAGAC 4 cut(s) 264, 710, 1136, 1222
BbvI GCAGC 6 cut(s) 178, 197, 200, 205, 900, 1108
BccI CCATC 4 cut(s) 14, 80, 386, 856
BceAI ACGGC 1 cut(s) 206
BciT130I CCWGG 2 cut(s) 209, 843
BclI TGATCA 2 cut(s) 742, 942
BcnI CCSGG 3 cut(s) 214, 215, 635
BcoDI GTCTC 3 cut(s) 166, 470, 652
BcuI ACTAGT 1 cut(s) 1286
BfaI CTAG 4 cut(s) 485, 825, 918, 1287
BfmI CTRYAG 1 cut(s) 1040
BglI GCCNNNNNGGC 1 cut(s) 227
BisI GCNGC 9 cut(s) 186, 189, 192, 219, 231, 856, 911, 914, 1097
BlsI GCNGC 9 cut(s) 187, 190, 193, 220, 232, 857, 912, 915, 1098
Bme1390I CCNGG 5 cut(s) 209, 214, 215, 635, 843
Bme18I GGWCC 1 cut(s) 205
BmeRI GACNNNNNGTC 1 cut(s) 644
BmeT110I CYCGRG 1 cut(s) 213
BmgT120I GGNCC 3 cut(s) 205, 211, 1058
BmiI GGNNCC 1 cut(s) 1030
BmrFI CCNGG 5 cut(s) 209, 214, 215, 635, 843
BmsI GCATC 2 cut(s) 1062, 1074
BpiI GAAGAC 4 cut(s) 264, 710, 1136, 1222
BplI GAGNNNNNCTC 2 cut(s) 518, 550
BpuEI CTTGAG 1 cut(s) 452
BpuMI CCSGG 3 cut(s) 214, 215, 635
BsaAI YACGTR 1 cut(s) 850
BsaJI CCNNGG 5 cut(s) 195, 213, 222, 549, 634
BsaXI ACNNNNNCTCC 6 cut(s) 33, 48, 63, 78, 700, 730
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 700
Bse1I ACTGG 3 cut(s) 207, 315, 785
Bse3DI GCAATG 2 cut(s) 180, 561
BseBI CCWGG 2 cut(s) 209, 843
BseDI CCNNGG 5 cut(s) 195, 213, 222, 549, 634
BseGI GGATG 3 cut(s) 72, 370, 388
BseLI CCNNNNNNNGG 2 cut(s) 214, 700
BseMI GCAATG 2 cut(s) 180, 561
BseMII CTCAG 4 cut(s) 422, 452, 1127, 1208
BseNI ACTGG 3 cut(s) 207, 315, 785
BseRI GAGGAG 7 cut(s) 334, 343, 346, 383, 997, 1079, 1220
BseXI GCAGC 6 cut(s) 178, 197, 200, 205, 900, 1108
BseYI CCCAGC 1 cut(s) 282
Bsh1236I CGCG 1 cut(s) 1234
BshFI GGCC 6 cut(s) 5, 179, 212, 233, 548, 1060
BsiHKCI CYCGRG 1 cut(s) 213
BsiSI CCGG 2 cut(s) 214, 634
BslFI GGGAC 1 cut(s) 651
BslI CCNNNNNNNGG 2 cut(s) 214, 700
BsmAI GTCTC 3 cut(s) 166, 470, 652
BsmFI GGGAC 1 cut(s) 651
BsmI GAATGC 2 cut(s) 458, 958
BsnI GGCC 6 cut(s) 5, 179, 212, 233, 548, 1060
BsoBI CYCGRG 1 cut(s) 213
Bsp1286I GDGCHC 2 cut(s) 437, 1193
Bsp143I GATC 4 cut(s) 618, 742, 942, 1047
BspACI CCGC 5 cut(s) 230, 248, 855, 910, 1234
BspANI GGCC 6 cut(s) 5, 179, 212, 233, 548, 1060
BspCNI CTCAG 4 cut(s) 423, 453, 1128, 1207
BspFNI CGCG 1 cut(s) 1234
BspHI TCATGA 1 cut(s) 745
BspLI GGNNCC 1 cut(s) 1030
BspMAI CTGCAG 1 cut(s) 1044
BsrDI GCAATG 2 cut(s) 180, 561
BsrI ACTGG 3 cut(s) 207, 315, 785
BssECI CCNNGG 5 cut(s) 195, 213, 222, 549, 634
BssMI GATC 4 cut(s) 618, 742, 942, 1047
BssT1I CCWWGG 1 cut(s) 549
Bst2UI CCWGG 2 cut(s) 209, 843
Bst4CI ACNGT 4 cut(s) 543, 964, 1021, 1221
Bst6I CTCTTC 4 cut(s) 136, 320, 371, 595
BstAPI GCANNNNNTGC 1 cut(s) 191
BstBAI YACGTR 1 cut(s) 850
BstC8I GCNNGC 2 cut(s) 658, 795
BstDEI CTNAG 4 cut(s) 431, 461, 1136, 1194
BstDSI CCRYGG 1 cut(s) 222
BstENI CCTNNNNNAGG 1 cut(s) 698
BstF5I GGATG 3 cut(s) 72, 370, 388
BstFNI CGCG 1 cut(s) 1234
BstKTI GATC 4 cut(s) 621, 745, 945, 1050
BstMAI GTCTC 3 cut(s) 166, 470, 652
BstMBI GATC 4 cut(s) 618, 742, 942, 1047
BstMWI GCNNNNNNNGC 8 cut(s) 185, 191, 197, 218, 227, 239, 1093, 1105
BstNI CCWGG 2 cut(s) 209, 843
BstSCI CCNGG 5 cut(s) 207, 212, 213, 633, 841
BstSFI CTRYAG 1 cut(s) 1040
BstUI CGCG 1 cut(s) 1234
BstV1I GCAGC 6 cut(s) 178, 197, 200, 205, 900, 1108
BstV2I GAAGAC 4 cut(s) 264, 710, 1136, 1222
BstXI CCANNNNNNTGG 1 cut(s) 556
BsuRI GGCC 6 cut(s) 5, 179, 212, 233, 548, 1060
BtgI CCRYGG 1 cut(s) 222
BtsCI GGATG 3 cut(s) 72, 370, 388
BtsI GCAGTG 1 cut(s) 1037
BtsIMutI CAGTG 2 cut(s) 200, 1037
Cac8I GCNNGC 2 cut(s) 658, 795
CaiI CAGNNNCTG 2 cut(s) 191, 913
CciI TCATGA 1 cut(s) 745
Cfr13I GGNCC 3 cut(s) 205, 211, 1058
Cfr9I CCCGGG 1 cut(s) 213
CseI GACGC 3 cut(s) 179, 248, 1141
Csp6I GTAC 1 cut(s) 778
CspCI CAANNNNNGTGG 2 cut(s) 130, 165
CviAII CATG 5 cut(s) 524, 746, 859, 923, 1033
CviQI GTAC 1 cut(s) 778
DdeI CTNAG 4 cut(s) 431, 461, 1136, 1194
DpnI GATC 4 cut(s) 620, 744, 944, 1049
DpnII GATC 4 cut(s) 618, 742, 942, 1047
DriI GACNNNNNGTC 1 cut(s) 644
EaeI YGGCCR 4 cut(s) 3, 177, 231, 546
Eam1104I CTCTTC 4 cut(s) 136, 320, 371, 595
Eam1105I GACNNNNNGTC 1 cut(s) 644
EarI CTCTTC 4 cut(s) 136, 320, 371, 595
Eco130I CCWWGG 1 cut(s) 549
Eco24I GRGCYC 2 cut(s) 437, 1193
Eco47I GGWCC 1 cut(s) 205
Eco57I CTGAAG 2 cut(s) 957, 1148
Eco72I CACGTG 1 cut(s) 850
Eco88I CYCGRG 1 cut(s) 213
EcoNI CCTNNNNNAGG 1 cut(s) 698
EcoRII CCWGG 2 cut(s) 207, 841
EcoT14I CCWWGG 1 cut(s) 549
EcoT38I GRGCYC 2 cut(s) 437, 1193
ErhI CCWWGG 1 cut(s) 549
FaeI CATG 5 cut(s) 527, 749, 862, 926, 1036
FaqI GGGAC 1 cut(s) 651
FatI CATG 5 cut(s) 523, 745, 858, 922, 1032
FauI CCCGC 1 cut(s) 1227
FauNDI CATATG 1 cut(s) 772
FbaI TGATCA 2 cut(s) 742, 942
Fnu4HI GCNGC 9 cut(s) 186, 189, 192, 219, 231, 856, 911, 914, 1097
FokI GGATG 3 cut(s) 59, 377, 395
FriOI GRGCYC 2 cut(s) 437, 1193
Fsp4HI GCNGC 9 cut(s) 186, 189, 192, 219, 231, 856, 911, 914, 1097
FspBI CTAG 4 cut(s) 485, 825, 918, 1287
GluI GCNGC 9 cut(s) 186, 189, 192, 219, 231, 856, 911, 914, 1097
GsaI CCCAGC 1 cut(s) 286
HaeIII GGCC 6 cut(s) 5, 179, 212, 233, 548, 1060
HapII CCGG 2 cut(s) 214, 634
HgaI GACGC 3 cut(s) 179, 248, 1141
Hin1II CATG 5 cut(s) 527, 749, 862, 926, 1036
HindIII AAGCTT 4 cut(s) 682, 968, 1121, 1226
HinfI GANTC 4 cut(s) 463, 488, 605, 1176
HpaII CCGG 2 cut(s) 214, 634
HphI GGTGA 3 cut(s) 21, 262, 278
Hpy166II GTNNAC 2 cut(s) 308, 778
Hpy188I TCNGA 7 cut(s) 432, 462, 493, 503, 806, 836, 1128
Hpy188III TCNNGA 6 cut(s) 625, 689, 701, 746, 825, 1117
Hpy8I GTNNAC 2 cut(s) 308, 778
HpyAV CCTTC 1 cut(s) 698
HpyCH4III ACNGT 4 cut(s) 543, 964, 1021, 1221
HpyCH4IV ACGT 1 cut(s) 849
HpyCH4V TGCA 3 cut(s) 185, 1042, 1265
HpyF10VI GCNNNNNNNGC 8 cut(s) 185, 191, 197, 218, 227, 239, 1093, 1105
HpyF3I CTNAG 4 cut(s) 431, 461, 1136, 1194
HpySE526I ACGT 1 cut(s) 849
Hsp92II CATG 5 cut(s) 527, 749, 862, 926, 1036
Ksp22I TGATCA 2 cut(s) 742, 942
Kzo9I GATC 4 cut(s) 618, 742, 942, 1047
LmnI GCTCC 4 cut(s) 476, 627, 708, 984
Lsp1109I GCAGC 6 cut(s) 178, 197, 200, 205, 900, 1108
LweI GCATC 2 cut(s) 1062, 1074
MaeI CTAG 4 cut(s) 485, 825, 918, 1287
MaeII ACGT 1 cut(s) 849
MaeIII GTNAC 3 cut(s) 27, 250, 606
MalI GATC 4 cut(s) 620, 744, 944, 1049
MboI GATC 4 cut(s) 618, 742, 942, 1047
MhlI GDGCHC 2 cut(s) 437, 1193
MlsI TGGCCA 3 cut(s) 5, 179, 548
MluCI AATT 8 cut(s) 45, 154, 886, 930, 996, 1260, 1274, 1307
MluNI TGGCCA 3 cut(s) 5, 179, 548
MlyI GAGTC 3 cut(s) 472, 614, 1170
MmeI TCCRAC 2 cut(s) 133, 333
Mox20I TGGCCA 3 cut(s) 5, 179, 548
MscI TGGCCA 3 cut(s) 5, 179, 548
MseI TTAA 3 cut(s) 680, 1223, 1277
Msp20I TGGCCA 3 cut(s) 5, 179, 548
MspA1I CMGCKG 2 cut(s) 191, 910
MspI CCGG 2 cut(s) 214, 634
MspR9I CCNGG 5 cut(s) 209, 214, 215, 635, 843
Mva1269I GAATGC 2 cut(s) 458, 958
MvaI CCWGG 2 cut(s) 209, 843
MvnI CGCG 1 cut(s) 1234
MwoI GCNNNNNNNGC 8 cut(s) 185, 191, 197, 218, 227, 239, 1093, 1105
NciI CCSGG 3 cut(s) 214, 215, 635
NdeI CATATG 1 cut(s) 772
NdeII GATC 4 cut(s) 618, 742, 942, 1047
NlaIII CATG 5 cut(s) 527, 749, 862, 926, 1036
NlaIV GGNNCC 1 cut(s) 1030
NmeAIII GCCGAG 1 cut(s) 220
NmuCI GTSAC 3 cut(s) 27, 250, 606
PagI TCATGA 1 cut(s) 745
PctI GAATGC 2 cut(s) 458, 958
PfeI GAWTC 1 cut(s) 488
PkrI GCNGC 9 cut(s) 187, 190, 193, 220, 232, 857, 912, 915, 1098
PleI GAGTC 3 cut(s) 471, 613, 1170
PmaCI CACGTG 1 cut(s) 850
PmlI CACGTG 1 cut(s) 850
PpsI GAGTC 3 cut(s) 471, 613, 1170
Ppu21I YACGTR 1 cut(s) 850
PsiI TTATAA 1 cut(s) 1091
Psp6I CCWGG 2 cut(s) 207, 841
PspCI CACGTG 1 cut(s) 850
PspFI CCCAGC 1 cut(s) 282
PspGI CCWGG 2 cut(s) 207, 841
PspN4I GGNNCC 1 cut(s) 1030
PspPI GGNCC 3 cut(s) 205, 211, 1058
PstI CTGCAG 1 cut(s) 1044
PstNI CAGNNNCTG 2 cut(s) 191, 913
PvuII CAGCTG 1 cut(s) 191
RsaI GTAC 1 cut(s) 779
RsaNI GTAC 1 cut(s) 778
SaqAI TTAA 3 cut(s) 680, 1223, 1277
SatI GCNGC 9 cut(s) 186, 189, 192, 219, 231, 856, 911, 914, 1097
Sau3AI GATC 4 cut(s) 618, 742, 942, 1047
Sau96I GGNCC 3 cut(s) 205, 211, 1058
SchI GAGTC 3 cut(s) 472, 614, 1170
ScrFI CCNGG 5 cut(s) 209, 214, 215, 635, 843
SduI GDGCHC 2 cut(s) 437, 1193
SfaNI GCATC 2 cut(s) 1062, 1074
SfcI CTRYAG 1 cut(s) 1040
SinI GGWCC 1 cut(s) 205
SmaI CCCGGG 1 cut(s) 215
SmlI CTYRAG 1 cut(s) 467
SmoI CTYRAG 1 cut(s) 467
SpeI ACTAGT 1 cut(s) 1286
SrfI GCCCGGGC 1 cut(s) 215
Sse9I AATT 8 cut(s) 45, 154, 886, 930, 996, 1260, 1274, 1307
SsiI CCGC 5 cut(s) 230, 248, 855, 910, 1234
SspMI CTAG 4 cut(s) 485, 825, 918, 1287
StyD4I CCNGG 5 cut(s) 207, 212, 213, 633, 841
StyI CCWWGG 1 cut(s) 549
TaaI ACNGT 4 cut(s) 543, 964, 1021, 1221
TaiI ACGT 1 cut(s) 852
TaqI TCGA 4 cut(s) 724, 1024, 1116, 1246
TasI AATT 8 cut(s) 45, 154, 886, 930, 996, 1260, 1274, 1307
TatI WGTACW 1 cut(s) 777
TauI GCSGC 3 cut(s) 233, 858, 913
TfiI GAWTC 1 cut(s) 488
Tru1I TTAA 3 cut(s) 680, 1223, 1277
Tru9I TTAA 3 cut(s) 680, 1223, 1277
TscAI CASTG 2 cut(s) 207, 1044
TseFI GTSAC 3 cut(s) 27, 250, 606
TseI GCWGC 6 cut(s) 185, 188, 191, 218, 913, 1096
Tsp45I GTSAC 3 cut(s) 27, 250, 606
TspDTI ATGAA 6 cut(s) 389, 438, 578, 942, 990, 1118
TspGWI ACGGA 1 cut(s) 269
TspMI CCCGGG 1 cut(s) 213
TspRI CASTG 2 cut(s) 207, 1044
VpaK11BI GGWCC 1 cut(s) 205
XagI CCTNNNNNAGG 1 cut(s) 698
XapI RAATTY 1 cut(s) 886
XbaI TCTAGA 1 cut(s) 824
XcmI CCANNNNNNNNNTGG 2 cut(s) 172, 241
XmaI CCCGGG 1 cut(s) 213
XspI CTAG 4 cut(s) 485, 825, 918, 1287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.