RNA polymerase sigma factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G13730 |
| fragaria_vesca | FvH4_7g01630 |
| malus_domestica | MD02G1302300.v1.1 MD07G1021800.v1.1 |
| prunus_persica | Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 |
| pyrus_communis | pycom02g25460 pycom07g01650 |
| rosa_chinensis | RchiOBHm_Chr1g0317901 |
| rosa_laevigata | RLG00000029590 RLG00000030578 |
| rosa_multiflora | Rmu_sc0000654.1_g000054 Rmu_ssc0000008.1_g000049 |
| rosa_roxburghii | Rroxscaffold_4G00330140 |
| rosa_rugosa | Rorug01G0018500 |
| rosa_samantha | Rh1AG030000 Rh1BG026000 Rh1BG026100 Rh1CG028600 Rh1DG041500 |
| rosa_wichuraiana | Rw1G002260 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1091 |
| AccII | CGCG | 1 cut(s) | 1234 |
| AciI | CCGC | 5 cut(s) | 230, 248, 855, 910, 1234 |
| AcoI | YGGCCR | 4 cut(s) | 3, 177, 231, 546 |
| AcsI | RAATTY | 1 cut(s) | 886 |
| AcuI | CTGAAG | 2 cut(s) | 957, 1148 |
| AcvI | CACGTG | 1 cut(s) | 850 |
| AfaI | GTAC | 1 cut(s) | 779 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 214, 700 |
| AflIII | ACRYGT | 2 cut(s) | 847, 849 |
| AgsI | TTSAA | 4 cut(s) | 389, 689, 895, 960 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 644 |
| AhlI | ACTAGT | 1 cut(s) | 1286 |
| AjnI | CCWGG | 2 cut(s) | 207, 841 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 30, 62, 696, 728 |
| Alw26I | GTCTC | 3 cut(s) | 166, 470, 652 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 191, 913 |
| Ama87I | CYCGRG | 1 cut(s) | 213 |
| AoxI | GGCC | 6 cut(s) | 3, 177, 210, 231, 546, 1058 |
| ApeKI | GCWGC | 6 cut(s) | 185, 188, 191, 218, 913, 1096 |
| ApoI | RAATTY | 1 cut(s) | 886 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1276, 1308 |
| AspS9I | GGNCC | 3 cut(s) | 205, 211, 1058 |
| AsuC2I | CCSGG | 3 cut(s) | 214, 215, 635 |
| AsuHPI | GGTGA | 3 cut(s) | 21, 262, 278 |
| AvaI | CYCGRG | 1 cut(s) | 213 |
| AvaII | GGWCC | 1 cut(s) | 205 |
| BalI | TGGCCA | 3 cut(s) | 5, 179, 548 |
| BanII | GRGCYC | 2 cut(s) | 437, 1193 |
| BbrPI | CACGTG | 1 cut(s) | 850 |
| BbsI | GAAGAC | 4 cut(s) | 264, 710, 1136, 1222 |
| BbvI | GCAGC | 6 cut(s) | 178, 197, 200, 205, 900, 1108 |
| BccI | CCATC | 4 cut(s) | 14, 80, 386, 856 |
| BceAI | ACGGC | 1 cut(s) | 206 |
| BciT130I | CCWGG | 2 cut(s) | 209, 843 |
| BclI | TGATCA | 2 cut(s) | 742, 942 |
| BcnI | CCSGG | 3 cut(s) | 214, 215, 635 |
| BcoDI | GTCTC | 3 cut(s) | 166, 470, 652 |
| BcuI | ACTAGT | 1 cut(s) | 1286 |
| BfaI | CTAG | 4 cut(s) | 485, 825, 918, 1287 |
| BfmI | CTRYAG | 1 cut(s) | 1040 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 227 |
| BisI | GCNGC | 9 cut(s) | 186, 189, 192, 219, 231, 856, 911, 914, 1097 |
| BlsI | GCNGC | 9 cut(s) | 187, 190, 193, 220, 232, 857, 912, 915, 1098 |
| Bme1390I | CCNGG | 5 cut(s) | 209, 214, 215, 635, 843 |
| Bme18I | GGWCC | 1 cut(s) | 205 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 644 |
| BmeT110I | CYCGRG | 1 cut(s) | 213 |
| BmgT120I | GGNCC | 3 cut(s) | 205, 211, 1058 |
| BmiI | GGNNCC | 1 cut(s) | 1030 |
| BmrFI | CCNGG | 5 cut(s) | 209, 214, 215, 635, 843 |
| BmsI | GCATC | 2 cut(s) | 1062, 1074 |
| BpiI | GAAGAC | 4 cut(s) | 264, 710, 1136, 1222 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 518, 550 |
| BpuEI | CTTGAG | 1 cut(s) | 452 |
| BpuMI | CCSGG | 3 cut(s) | 214, 215, 635 |
| BsaAI | YACGTR | 1 cut(s) | 850 |
| BsaJI | CCNNGG | 5 cut(s) | 195, 213, 222, 549, 634 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 33, 48, 63, 78, 700, 730 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 214, 700 |
| Bse1I | ACTGG | 3 cut(s) | 207, 315, 785 |
| Bse3DI | GCAATG | 2 cut(s) | 180, 561 |
| BseBI | CCWGG | 2 cut(s) | 209, 843 |
| BseDI | CCNNGG | 5 cut(s) | 195, 213, 222, 549, 634 |
| BseGI | GGATG | 3 cut(s) | 72, 370, 388 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 214, 700 |
| BseMI | GCAATG | 2 cut(s) | 180, 561 |
| BseMII | CTCAG | 4 cut(s) | 422, 452, 1127, 1208 |
| BseNI | ACTGG | 3 cut(s) | 207, 315, 785 |
| BseRI | GAGGAG | 7 cut(s) | 334, 343, 346, 383, 997, 1079, 1220 |
| BseXI | GCAGC | 6 cut(s) | 178, 197, 200, 205, 900, 1108 |
| BseYI | CCCAGC | 1 cut(s) | 282 |
| Bsh1236I | CGCG | 1 cut(s) | 1234 |
| BshFI | GGCC | 6 cut(s) | 5, 179, 212, 233, 548, 1060 |
| BsiHKCI | CYCGRG | 1 cut(s) | 213 |
| BsiSI | CCGG | 2 cut(s) | 214, 634 |
| BslFI | GGGAC | 1 cut(s) | 651 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 214, 700 |
| BsmAI | GTCTC | 3 cut(s) | 166, 470, 652 |
| BsmFI | GGGAC | 1 cut(s) | 651 |
| BsmI | GAATGC | 2 cut(s) | 458, 958 |
| BsnI | GGCC | 6 cut(s) | 5, 179, 212, 233, 548, 1060 |
| BsoBI | CYCGRG | 1 cut(s) | 213 |
| Bsp1286I | GDGCHC | 2 cut(s) | 437, 1193 |
| Bsp143I | GATC | 4 cut(s) | 618, 742, 942, 1047 |
| BspACI | CCGC | 5 cut(s) | 230, 248, 855, 910, 1234 |
| BspANI | GGCC | 6 cut(s) | 5, 179, 212, 233, 548, 1060 |
| BspCNI | CTCAG | 4 cut(s) | 423, 453, 1128, 1207 |
| BspFNI | CGCG | 1 cut(s) | 1234 |
| BspHI | TCATGA | 1 cut(s) | 745 |
| BspLI | GGNNCC | 1 cut(s) | 1030 |
| BspMAI | CTGCAG | 1 cut(s) | 1044 |
| BsrDI | GCAATG | 2 cut(s) | 180, 561 |
| BsrI | ACTGG | 3 cut(s) | 207, 315, 785 |
| BssECI | CCNNGG | 5 cut(s) | 195, 213, 222, 549, 634 |
| BssMI | GATC | 4 cut(s) | 618, 742, 942, 1047 |
| BssT1I | CCWWGG | 1 cut(s) | 549 |
| Bst2UI | CCWGG | 2 cut(s) | 209, 843 |
| Bst4CI | ACNGT | 4 cut(s) | 543, 964, 1021, 1221 |
| Bst6I | CTCTTC | 4 cut(s) | 136, 320, 371, 595 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 191 |
| BstBAI | YACGTR | 1 cut(s) | 850 |
| BstC8I | GCNNGC | 2 cut(s) | 658, 795 |
| BstDEI | CTNAG | 4 cut(s) | 431, 461, 1136, 1194 |
| BstDSI | CCRYGG | 1 cut(s) | 222 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 698 |
| BstF5I | GGATG | 3 cut(s) | 72, 370, 388 |
| BstFNI | CGCG | 1 cut(s) | 1234 |
| BstKTI | GATC | 4 cut(s) | 621, 745, 945, 1050 |
| BstMAI | GTCTC | 3 cut(s) | 166, 470, 652 |
| BstMBI | GATC | 4 cut(s) | 618, 742, 942, 1047 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 185, 191, 197, 218, 227, 239, 1093, 1105 |
| BstNI | CCWGG | 2 cut(s) | 209, 843 |
| BstSCI | CCNGG | 5 cut(s) | 207, 212, 213, 633, 841 |
| BstSFI | CTRYAG | 1 cut(s) | 1040 |
| BstUI | CGCG | 1 cut(s) | 1234 |
| BstV1I | GCAGC | 6 cut(s) | 178, 197, 200, 205, 900, 1108 |
| BstV2I | GAAGAC | 4 cut(s) | 264, 710, 1136, 1222 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 556 |
| BsuRI | GGCC | 6 cut(s) | 5, 179, 212, 233, 548, 1060 |
| BtgI | CCRYGG | 1 cut(s) | 222 |
| BtsCI | GGATG | 3 cut(s) | 72, 370, 388 |
| BtsI | GCAGTG | 1 cut(s) | 1037 |
| BtsIMutI | CAGTG | 2 cut(s) | 200, 1037 |
| Cac8I | GCNNGC | 2 cut(s) | 658, 795 |
| CaiI | CAGNNNCTG | 2 cut(s) | 191, 913 |
| CciI | TCATGA | 1 cut(s) | 745 |
| Cfr13I | GGNCC | 3 cut(s) | 205, 211, 1058 |
| Cfr9I | CCCGGG | 1 cut(s) | 213 |
| CseI | GACGC | 3 cut(s) | 179, 248, 1141 |
| Csp6I | GTAC | 1 cut(s) | 778 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 130, 165 |
| CviAII | CATG | 5 cut(s) | 524, 746, 859, 923, 1033 |
| CviQI | GTAC | 1 cut(s) | 778 |
| DdeI | CTNAG | 4 cut(s) | 431, 461, 1136, 1194 |
| DpnI | GATC | 4 cut(s) | 620, 744, 944, 1049 |
| DpnII | GATC | 4 cut(s) | 618, 742, 942, 1047 |
| DriI | GACNNNNNGTC | 1 cut(s) | 644 |
| EaeI | YGGCCR | 4 cut(s) | 3, 177, 231, 546 |
| Eam1104I | CTCTTC | 4 cut(s) | 136, 320, 371, 595 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 644 |
| EarI | CTCTTC | 4 cut(s) | 136, 320, 371, 595 |
| Eco130I | CCWWGG | 1 cut(s) | 549 |
| Eco24I | GRGCYC | 2 cut(s) | 437, 1193 |
| Eco47I | GGWCC | 1 cut(s) | 205 |
| Eco57I | CTGAAG | 2 cut(s) | 957, 1148 |
| Eco72I | CACGTG | 1 cut(s) | 850 |
| Eco88I | CYCGRG | 1 cut(s) | 213 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 698 |
| EcoRII | CCWGG | 2 cut(s) | 207, 841 |
| EcoT14I | CCWWGG | 1 cut(s) | 549 |
| EcoT38I | GRGCYC | 2 cut(s) | 437, 1193 |
| ErhI | CCWWGG | 1 cut(s) | 549 |
| FaeI | CATG | 5 cut(s) | 527, 749, 862, 926, 1036 |
| FaqI | GGGAC | 1 cut(s) | 651 |
| FatI | CATG | 5 cut(s) | 523, 745, 858, 922, 1032 |
| FauI | CCCGC | 1 cut(s) | 1227 |
| FauNDI | CATATG | 1 cut(s) | 772 |
| FbaI | TGATCA | 2 cut(s) | 742, 942 |
| Fnu4HI | GCNGC | 9 cut(s) | 186, 189, 192, 219, 231, 856, 911, 914, 1097 |
| FokI | GGATG | 3 cut(s) | 59, 377, 395 |
| FriOI | GRGCYC | 2 cut(s) | 437, 1193 |
| Fsp4HI | GCNGC | 9 cut(s) | 186, 189, 192, 219, 231, 856, 911, 914, 1097 |
| FspBI | CTAG | 4 cut(s) | 485, 825, 918, 1287 |
| GluI | GCNGC | 9 cut(s) | 186, 189, 192, 219, 231, 856, 911, 914, 1097 |
| GsaI | CCCAGC | 1 cut(s) | 286 |
| HaeIII | GGCC | 6 cut(s) | 5, 179, 212, 233, 548, 1060 |
| HapII | CCGG | 2 cut(s) | 214, 634 |
| HgaI | GACGC | 3 cut(s) | 179, 248, 1141 |
| Hin1II | CATG | 5 cut(s) | 527, 749, 862, 926, 1036 |
| HindIII | AAGCTT | 4 cut(s) | 682, 968, 1121, 1226 |
| HinfI | GANTC | 4 cut(s) | 463, 488, 605, 1176 |
| HpaII | CCGG | 2 cut(s) | 214, 634 |
| HphI | GGTGA | 3 cut(s) | 21, 262, 278 |
| Hpy166II | GTNNAC | 2 cut(s) | 308, 778 |
| Hpy188I | TCNGA | 7 cut(s) | 432, 462, 493, 503, 806, 836, 1128 |
| Hpy188III | TCNNGA | 6 cut(s) | 625, 689, 701, 746, 825, 1117 |
| Hpy8I | GTNNAC | 2 cut(s) | 308, 778 |
| HpyAV | CCTTC | 1 cut(s) | 698 |
| HpyCH4III | ACNGT | 4 cut(s) | 543, 964, 1021, 1221 |
| HpyCH4IV | ACGT | 1 cut(s) | 849 |
| HpyCH4V | TGCA | 3 cut(s) | 185, 1042, 1265 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 185, 191, 197, 218, 227, 239, 1093, 1105 |
| HpyF3I | CTNAG | 4 cut(s) | 431, 461, 1136, 1194 |
| HpySE526I | ACGT | 1 cut(s) | 849 |
| Hsp92II | CATG | 5 cut(s) | 527, 749, 862, 926, 1036 |
| Ksp22I | TGATCA | 2 cut(s) | 742, 942 |
| Kzo9I | GATC | 4 cut(s) | 618, 742, 942, 1047 |
| LmnI | GCTCC | 4 cut(s) | 476, 627, 708, 984 |
| Lsp1109I | GCAGC | 6 cut(s) | 178, 197, 200, 205, 900, 1108 |
| LweI | GCATC | 2 cut(s) | 1062, 1074 |
| MaeI | CTAG | 4 cut(s) | 485, 825, 918, 1287 |
| MaeII | ACGT | 1 cut(s) | 849 |
| MaeIII | GTNAC | 3 cut(s) | 27, 250, 606 |
| MalI | GATC | 4 cut(s) | 620, 744, 944, 1049 |
| MboI | GATC | 4 cut(s) | 618, 742, 942, 1047 |
| MhlI | GDGCHC | 2 cut(s) | 437, 1193 |
| MlsI | TGGCCA | 3 cut(s) | 5, 179, 548 |
| MluCI | AATT | 8 cut(s) | 45, 154, 886, 930, 996, 1260, 1274, 1307 |
| MluNI | TGGCCA | 3 cut(s) | 5, 179, 548 |
| MlyI | GAGTC | 3 cut(s) | 472, 614, 1170 |
| MmeI | TCCRAC | 2 cut(s) | 133, 333 |
| Mox20I | TGGCCA | 3 cut(s) | 5, 179, 548 |
| MscI | TGGCCA | 3 cut(s) | 5, 179, 548 |
| MseI | TTAA | 3 cut(s) | 680, 1223, 1277 |
| Msp20I | TGGCCA | 3 cut(s) | 5, 179, 548 |
| MspA1I | CMGCKG | 2 cut(s) | 191, 910 |
| MspI | CCGG | 2 cut(s) | 214, 634 |
| MspR9I | CCNGG | 5 cut(s) | 209, 214, 215, 635, 843 |
| Mva1269I | GAATGC | 2 cut(s) | 458, 958 |
| MvaI | CCWGG | 2 cut(s) | 209, 843 |
| MvnI | CGCG | 1 cut(s) | 1234 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 185, 191, 197, 218, 227, 239, 1093, 1105 |
| NciI | CCSGG | 3 cut(s) | 214, 215, 635 |
| NdeI | CATATG | 1 cut(s) | 772 |
| NdeII | GATC | 4 cut(s) | 618, 742, 942, 1047 |
| NlaIII | CATG | 5 cut(s) | 527, 749, 862, 926, 1036 |
| NlaIV | GGNNCC | 1 cut(s) | 1030 |
| NmeAIII | GCCGAG | 1 cut(s) | 220 |
| NmuCI | GTSAC | 3 cut(s) | 27, 250, 606 |
| PagI | TCATGA | 1 cut(s) | 745 |
| PctI | GAATGC | 2 cut(s) | 458, 958 |
| PfeI | GAWTC | 1 cut(s) | 488 |
| PkrI | GCNGC | 9 cut(s) | 187, 190, 193, 220, 232, 857, 912, 915, 1098 |
| PleI | GAGTC | 3 cut(s) | 471, 613, 1170 |
| PmaCI | CACGTG | 1 cut(s) | 850 |
| PmlI | CACGTG | 1 cut(s) | 850 |
| PpsI | GAGTC | 3 cut(s) | 471, 613, 1170 |
| Ppu21I | YACGTR | 1 cut(s) | 850 |
| PsiI | TTATAA | 1 cut(s) | 1091 |
| Psp6I | CCWGG | 2 cut(s) | 207, 841 |
| PspCI | CACGTG | 1 cut(s) | 850 |
| PspFI | CCCAGC | 1 cut(s) | 282 |
| PspGI | CCWGG | 2 cut(s) | 207, 841 |
| PspN4I | GGNNCC | 1 cut(s) | 1030 |
| PspPI | GGNCC | 3 cut(s) | 205, 211, 1058 |
| PstI | CTGCAG | 1 cut(s) | 1044 |
| PstNI | CAGNNNCTG | 2 cut(s) | 191, 913 |
| PvuII | CAGCTG | 1 cut(s) | 191 |
| RsaI | GTAC | 1 cut(s) | 779 |
| RsaNI | GTAC | 1 cut(s) | 778 |
| SaqAI | TTAA | 3 cut(s) | 680, 1223, 1277 |
| SatI | GCNGC | 9 cut(s) | 186, 189, 192, 219, 231, 856, 911, 914, 1097 |
| Sau3AI | GATC | 4 cut(s) | 618, 742, 942, 1047 |
| Sau96I | GGNCC | 3 cut(s) | 205, 211, 1058 |
| SchI | GAGTC | 3 cut(s) | 472, 614, 1170 |
| ScrFI | CCNGG | 5 cut(s) | 209, 214, 215, 635, 843 |
| SduI | GDGCHC | 2 cut(s) | 437, 1193 |
| SfaNI | GCATC | 2 cut(s) | 1062, 1074 |
| SfcI | CTRYAG | 1 cut(s) | 1040 |
| SinI | GGWCC | 1 cut(s) | 205 |
| SmaI | CCCGGG | 1 cut(s) | 215 |
| SmlI | CTYRAG | 1 cut(s) | 467 |
| SmoI | CTYRAG | 1 cut(s) | 467 |
| SpeI | ACTAGT | 1 cut(s) | 1286 |
| SrfI | GCCCGGGC | 1 cut(s) | 215 |
| Sse9I | AATT | 8 cut(s) | 45, 154, 886, 930, 996, 1260, 1274, 1307 |
| SsiI | CCGC | 5 cut(s) | 230, 248, 855, 910, 1234 |
| SspMI | CTAG | 4 cut(s) | 485, 825, 918, 1287 |
| StyD4I | CCNGG | 5 cut(s) | 207, 212, 213, 633, 841 |
| StyI | CCWWGG | 1 cut(s) | 549 |
| TaaI | ACNGT | 4 cut(s) | 543, 964, 1021, 1221 |
| TaiI | ACGT | 1 cut(s) | 852 |
| TaqI | TCGA | 4 cut(s) | 724, 1024, 1116, 1246 |
| TasI | AATT | 8 cut(s) | 45, 154, 886, 930, 996, 1260, 1274, 1307 |
| TatI | WGTACW | 1 cut(s) | 777 |
| TauI | GCSGC | 3 cut(s) | 233, 858, 913 |
| TfiI | GAWTC | 1 cut(s) | 488 |
| Tru1I | TTAA | 3 cut(s) | 680, 1223, 1277 |
| Tru9I | TTAA | 3 cut(s) | 680, 1223, 1277 |
| TscAI | CASTG | 2 cut(s) | 207, 1044 |
| TseFI | GTSAC | 3 cut(s) | 27, 250, 606 |
| TseI | GCWGC | 6 cut(s) | 185, 188, 191, 218, 913, 1096 |
| Tsp45I | GTSAC | 3 cut(s) | 27, 250, 606 |
| TspDTI | ATGAA | 6 cut(s) | 389, 438, 578, 942, 990, 1118 |
| TspGWI | ACGGA | 1 cut(s) | 269 |
| TspMI | CCCGGG | 1 cut(s) | 213 |
| TspRI | CASTG | 2 cut(s) | 207, 1044 |
| VpaK11BI | GGWCC | 1 cut(s) | 205 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 698 |
| XapI | RAATTY | 1 cut(s) | 886 |
| XbaI | TCTAGA | 1 cut(s) | 824 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 172, 241 |
| XmaI | CCCGGG | 1 cut(s) | 213 |
| XspI | CTAG | 4 cut(s) | 485, 825, 918, 1287 |