Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000008.1

Orthogroup ID

OG0005329

Physical Location & Seq

Genomic Coordinates Forward (+)

164880 .. 166397

Gene Structure 1518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000008.1_g000049.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ctggcacgcgttgtggcagaggtgaccagagatgccgcggcggtgagggaaggtattagtgaggtttggagttgcaatgagagtgggaatgagagtggtggtggattgatggcgaggaggaagaagaggaggagaaggcggaaagggttggagtgttttgatgatgaggagaggaagagggagtttgaagatgagagggtttcatttggggttgtgagatatggttatctgagcccaagagaggaggcagagtgctgtcagagtctcaaggagggagcaaaactagaatctgaaagaacaagagtcacagaagctcaagagcatgagccaacttcaaaacagctggcaaatgtgatgagggtgaagatgagaagtatagataaggttatccataacagaagagagtcacaagaaaggatcatcaagagctatcgaggacttgttgtctctattgccagcagctatcaagggaaaggattaagcttggaggacctcattcaggaagggagcattggacttcttcgaggggcagagaagtttgatcctgagagaggatttaaattatcaacatatgtgtattggtggattagacaagctatcatcagagccatagaaaagaagtctagaataattagattaccagtgagtagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000988 GO:0000990 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016987 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:0104004 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:2000112 GO:2000142 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sigma70_r2 Sigma70_r3 Sigma70_r4

Protein Analysis

217

Amino Acids

24.97

Weight (kDa)

9.58

Isoelectric Point (pI)

59.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13730
fragaria_vesca	FvH4_7g01630
malus_domestica	MD02G1302300.v1.1 MD07G1021800.v1.1
prunus_persica	Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1
pyrus_communis	pycom02g25460 pycom07g01650
rosa_chinensis	RchiOBHm_Chr1g0317901
rosa_laevigata	RLG00000029590 RLG00000030578
rosa_multiflora	Rmu_sc0000654.1_g000054 Rmu_ssc0000008.1_g000049
rosa_roxburghii	Rroxscaffold_4G00330140
rosa_rugosa	Rorug01G0018500
rosa_samantha	Rh1AG030000 Rh1BG026000 Rh1BG026100 Rh1CG028600 Rh1DG041500
rosa_wichuraiana	Rw1G002260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	9, 38
AciI	CCGC	4 cut(s)	36, 38, 41, 139
AclWI	GGATC	2 cut(s)	425, 536
AfiI	CCNNNNNNNGG	3 cut(s)	241, 499, 551
AflIII	ACRYGT	1 cut(s)	7
AgsI	TTSAA	2 cut(s)	188, 336
AhdI	GACNNNNNGTC	1 cut(s)	443
AjuI	GAANNNNNNNTTGG	2 cut(s)	495, 527
AluBI	AGCT	7 cut(s)	314, 343, 429, 462, 483, 596, 651
AluI	AGCT	7 cut(s)	314, 343, 429, 462, 483, 596, 651
Alw26I	GTCTC	2 cut(s)	269, 451
AlwI	GGATC	2 cut(s)	425, 536
ApeKI	GCWGC	1 cut(s)	459
AspS9I	GGNCC	1 cut(s)	490
AsuHPI	GGTGA	3 cut(s)	34, 55, 373
AvaII	GGWCC	1 cut(s)	490
BanII	GRGCYC	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	471
BccI	CCATC	1 cut(s)	103
BcoDI	GTCTC	2 cut(s)	269, 451
BfaI	CTAG	2 cut(s)	284, 624
BisI	GCNGC	3 cut(s)	36, 39, 460
BlsI	GCNGC	3 cut(s)	37, 40, 461
Bme18I	GGWCC	1 cut(s)	490
BmeRI	GACNNNNNGTC	1 cut(s)	443
BmgT120I	GGNCC	1 cut(s)	490
BmsI	GCATC	1 cut(s)	22
BpuEI	CTTGAG	2 cut(s)	251, 300
BsaJI	CCNNGG	1 cut(s)	36
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bsc4I	CCNNNNNNNGG	3 cut(s)	241, 499, 551
Bse1I	ACTGG	1 cut(s)	641
Bse3DI	GCAATG	1 cut(s)	82
BseDI	CCNNGG	1 cut(s)	36
BseLI	CCNNNNNNNGG	3 cut(s)	241, 499, 551
BseMI	GCAATG	1 cut(s)	82
BseMII	CTCAG	2 cut(s)	221, 537
BseNI	ACTGG	1 cut(s)	641
BseRI	GAGGAG	5 cut(s)	130, 142, 145, 182, 257
BseXI	GCAGC	1 cut(s)	471
Bsh1236I	CGCG	2 cut(s)	9, 38
BslI	CCNNNNNNNGG	3 cut(s)	241, 499, 551
BsmAI	GTCTC	2 cut(s)	269, 451
Bsp1286I	GDGCHC	1 cut(s)	236
Bsp143I	GATC	2 cut(s)	417, 541
BspACI	CCGC	4 cut(s)	36, 38, 41, 139
BspCNI	CTCAG	2 cut(s)	222, 538
BspFNI	CGCG	2 cut(s)	9, 38
BspPI	GGATC	2 cut(s)	425, 536
BsrDI	GCAATG	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	641
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	2 cut(s)	417, 541
Bst6I	CTCTTC	3 cut(s)	119, 170, 394
BstC8I	GCNNGC	3 cut(s)	7, 345, 457
BstDEI	CTNAG	2 cut(s)	230, 546
BstDSI	CCRYGG	1 cut(s)	36
BstEII	GGTNACC	1 cut(s)	22
BstENI	CCTNNNNNAGG	2 cut(s)	497, 549
BstFNI	CGCG	2 cut(s)	9, 38
BstKTI	GATC	2 cut(s)	420, 544
BstMAI	GTCTC	2 cut(s)	269, 451
BstMBI	GATC	2 cut(s)	417, 541
BstPI	GGTNACC	1 cut(s)	22
BstUI	CGCG	2 cut(s)	9, 38
BstV1I	GCAGC	1 cut(s)	471
BtgI	CCRYGG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	648
Cac8I	GCNNGC	3 cut(s)	7, 345, 457
Cfr13I	GGNCC	1 cut(s)	490
Cfr42I	CCGCGG	1 cut(s)	39
CspCI	CAANNNNNGTGG	2 cut(s)	64, 99
CviAII	CATG	1 cut(s)	323
DdeI	CTNAG	2 cut(s)	230, 546
DpnI	GATC	2 cut(s)	419, 543
DpnII	GATC	2 cut(s)	417, 541
DraI	TTTAAA	1 cut(s)	559
DriI	GACNNNNNGTC	1 cut(s)	443
Eam1104I	CTCTTC	3 cut(s)	119, 170, 394
Eam1105I	GACNNNNNGTC	1 cut(s)	443
EarI	CTCTTC	3 cut(s)	119, 170, 394
EciI	GGCGGA	1 cut(s)	154
Eco24I	GRGCYC	1 cut(s)	236
Eco47I	GGWCC	1 cut(s)	490
Eco91I	GGTNACC	1 cut(s)	22
EcoNI	CCTNNNNNAGG	2 cut(s)	497, 549
EcoO109I	RGGNCCY	1 cut(s)	490
EcoO65I	GGTNACC	1 cut(s)	22
EcoT38I	GRGCYC	1 cut(s)	236
FaeI	CATG	1 cut(s)	326
FaiI	YATR	7 cut(s)	222, 324, 377, 393, 571, 573, 611
FatI	CATG	1 cut(s)	322
FauNDI	CATATG	1 cut(s)	571
Fnu4HI	GCNGC	3 cut(s)	36, 39, 460
FriOI	GRGCYC	1 cut(s)	236
Fsp4HI	GCNGC	3 cut(s)	36, 39, 460
FspBI	CTAG	2 cut(s)	284, 624
GluI	GCNGC	3 cut(s)	36, 39, 460
Hin1II	CATG	1 cut(s)	326
HindIII	AAGCTT	1 cut(s)	481
HinfI	GANTC	4 cut(s)	262, 287, 303, 404
HphI	GGTGA	3 cut(s)	34, 55, 373
Hpy188I	TCNGA	4 cut(s)	231, 261, 292, 605
Hpy188III	TCNNGA	5 cut(s)	317, 424, 500, 545, 624
HpyAV	CCTTC	3 cut(s)	44, 129, 497
HpyCH4V	TGCA	1 cut(s)	75
HpyF3I	CTNAG	2 cut(s)	230, 546
Hsp92II	CATG	1 cut(s)	326
KspI	CCGCGG	1 cut(s)	39
Kzo9I	GATC	2 cut(s)	417, 541
LmnI	GCTCC	2 cut(s)	275, 507
LpnPI	CCDG	5 cut(s)	40, 329, 469, 485, 558
Lsp1109I	GCAGC	1 cut(s)	471
LweI	GCATC	1 cut(s)	22
MaeI	CTAG	2 cut(s)	284, 624
MaeIII	GTNAC	3 cut(s)	22, 304, 405
MalI	GATC	2 cut(s)	419, 543
MboI	GATC	2 cut(s)	417, 541
MboII	GAAGA	7 cut(s)	133, 136, 187, 200, 376, 411, 512
MhlI	GDGCHC	1 cut(s)	236
MluCI	AATT	2 cut(s)	560, 630
MluI	ACGCGT	1 cut(s)	7
MlyI	GAGTC	3 cut(s)	271, 312, 413
MmeI	TCCRAC	1 cut(s)	129
MseI	TTAA	2 cut(s)	479, 558
MspA1I	CMGCKG	2 cut(s)	38, 343
MvnI	CGCG	2 cut(s)	9, 38
NdeI	CATATG	1 cut(s)	571
NdeII	GATC	2 cut(s)	417, 541
NlaIII	CATG	1 cut(s)	326
NmuCI	GTSAC	3 cut(s)	22, 304, 405
PfeI	GAWTC	1 cut(s)	287
PkrI	GCNGC	3 cut(s)	37, 40, 461
PleI	GAGTC	3 cut(s)	270, 311, 412
PpsI	GAGTC	3 cut(s)	270, 311, 412
PpuMI	RGGWCCY	1 cut(s)	490
Psp5II	RGGWCCY	1 cut(s)	490
PspEI	GGTNACC	1 cut(s)	22
PspPI	GGNCC	1 cut(s)	490
PspPPI	RGGWCCY	1 cut(s)	490
PvuII	CAGCTG	1 cut(s)	343
SacII	CCGCGG	1 cut(s)	39
SaqAI	TTAA	2 cut(s)	479, 558
SatI	GCNGC	3 cut(s)	36, 39, 460
Sau3AI	GATC	2 cut(s)	417, 541
Sau96I	GGNCC	1 cut(s)	490
SchI	GAGTC	3 cut(s)	271, 312, 413
SduI	GDGCHC	1 cut(s)	236
SfaNI	GCATC	1 cut(s)	22
Sfr303I	CCGCGG	1 cut(s)	39
SgrBI	CCGCGG	1 cut(s)	39
SinI	GGWCC	1 cut(s)	490
SmiI	ATTTAAAT	1 cut(s)	559
SmlI	CTYRAG	2 cut(s)	266, 315
SmoI	CTYRAG	2 cut(s)	266, 315
Sse9I	AATT	2 cut(s)	560, 630
SsiI	CCGC	4 cut(s)	36, 38, 41, 139
SspMI	CTAG	2 cut(s)	284, 624
SwaI	ATTTAAAT	1 cut(s)	559
TaqI	TCGA	2 cut(s)	433, 523
TasI	AATT	2 cut(s)	560, 630
TauI	GCSGC	2 cut(s)	38, 41
TfiI	GAWTC	1 cut(s)	287
Tru1I	TTAA	2 cut(s)	479, 558
Tru9I	TTAA	2 cut(s)	479, 558
TscAI	CASTG	1 cut(s)	648
TseFI	GTSAC	3 cut(s)	22, 304, 405
TseI	GCWGC	1 cut(s)	459
Tsp45I	GTSAC	3 cut(s)	22, 304, 405
TspDTI	ATGAA	1 cut(s)	192
TspRI	CASTG	1 cut(s)	648
VpaK11BI	GGWCC	1 cut(s)	490
XagI	CCTNNNNNAGG	2 cut(s)	497, 549
XbaI	TCTAGA	1 cut(s)	623
XspI	CTAG	2 cut(s)	284, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.