Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000654.1

Orthogroup ID

OG0005329

Physical Location & Seq

Genomic Coordinates Reverse (-)

252309 .. 252806

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000654.1_g000054.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atggccatcaccaccggcatatgttcatcaccaaaccaacctccaactctccccacactttcactctcaaacatctcaccactcaaaacccacttgccttttccctcctccaaatttggcaccaacttagtctccaacgatgcattggtcaatggagctgcagcggaggcagtggcgctggcacgcgttgtggcagaggtgaccagagatgccgcggcggtgagggaaggtattagtgaggtttggagttgcaatgagagtgggaatgagagtggtggtggattgatggcgaggaggaagaagaggaggagaaggcggaaagggttggagtgttttgatgatgaggagaggaagagggagtttgaagatgagagggtttcatttggggttgtgagatatggttatctgagcccaagagaggaggcagagtgctgtcagagtctcaaggtattctgcttcatgactatgttagcattatgcaattactaccatatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000988 GO:0000990 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016987 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:0104004 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:2000112 GO:2000142 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sigma70_r2 Sigma70_r3 Sigma70_r4

Protein Analysis

165

Amino Acids

18.25

Weight (kDa)

8.18

Isoelectric Point (pI)

68.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13730
fragaria_vesca	FvH4_7g01630
malus_domestica	MD02G1302300.v1.1 MD07G1021800.v1.1
prunus_persica	Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1
pyrus_communis	pycom02g25460 pycom07g01650
rosa_chinensis	RchiOBHm_Chr1g0317901
rosa_laevigata	RLG00000029590 RLG00000030578
rosa_multiflora	Rmu_sc0000654.1_g000054 Rmu_ssc0000008.1_g000049
rosa_roxburghii	Rroxscaffold_4G00330140
rosa_rugosa	Rorug01G0018500
rosa_samantha	Rh1AG030000 Rh1BG026000 Rh1BG026100 Rh1CG028600 Rh1DG041500
rosa_wichuraiana	Rw1G002260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	119
AccII	CGCG	2 cut(s)	186, 215
AciI	CCGC	5 cut(s)	164, 213, 215, 218, 316
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	113
AfiI	CCNNNNNNNGG	1 cut(s)	418
AflIII	ACRYGT	1 cut(s)	184
AgsI	TTSAA	1 cut(s)	365
AluBI	AGCT	1 cut(s)	158
AluI	AGCT	1 cut(s)	158
Alw26I	GTCTC	2 cut(s)	136, 446
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	158, 161
ApoI	RAATTY	1 cut(s)	113
AspLEI	GCGC	1 cut(s)	178
AsuHPI	GGTGA	4 cut(s)	21, 69, 211, 232
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	413
BbvI	GCAGC	2 cut(s)	145, 173
BccI	CCATC	2 cut(s)	14, 280
BcoDI	GTCTC	2 cut(s)	136, 446
BfmI	CTRYAG	1 cut(s)	159
BfoI	RGCGCY	1 cut(s)	179
BisI	GCNGC	4 cut(s)	159, 162, 213, 216
BlsI	GCNGC	4 cut(s)	160, 163, 214, 217
BmiI	GGNNCC	1 cut(s)	121
BmsI	GCATC	2 cut(s)	130, 199
BpuEI	CTTGAG	1 cut(s)	428
BsaJI	CCNNGG	1 cut(s)	213
BsaXI	ACNNNNNCTCC	4 cut(s)	116, 146, 413, 443
Bsc4I	CCNNNNNNNGG	1 cut(s)	418
Bse118I	RCCGGY	1 cut(s)	14
Bse3DI	GCAATG	1 cut(s)	259
BseDI	CCNNGG	1 cut(s)	213
BseLI	CCNNNNNNNGG	1 cut(s)	418
BseMI	GCAATG	1 cut(s)	259
BseMII	CTCAG	1 cut(s)	398
BseRI	GAGGAG	6 cut(s)	97, 307, 319, 322, 359, 434
BseXI	GCAGC	2 cut(s)	145, 173
Bsh1236I	CGCG	2 cut(s)	186, 215
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	15
BslI	CCNNNNNNNGG	1 cut(s)	418
BsmAI	GTCTC	2 cut(s)	136, 446
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	413
BspACI	CCGC	5 cut(s)	164, 213, 215, 218, 316
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	399
BspFNI	CGCG	2 cut(s)	186, 215
BspHI	TCATGA	1 cut(s)	459
BspLI	GGNNCC	1 cut(s)	121
BspMAI	CTGCAG	1 cut(s)	163
BspT107I	GGYRCC	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	259
BsrFI	RCCGGY	1 cut(s)	14
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	213
Bst6I	CTCTTC	2 cut(s)	296, 347
BstC8I	GCNNGC	2 cut(s)	180, 184
BstDEI	CTNAG	2 cut(s)	127, 407
BstDSI	CCRYGG	1 cut(s)	213
BstEII	GGTNACC	1 cut(s)	199
BstFNI	CGCG	2 cut(s)	186, 215
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	178
BstMAI	GTCTC	2 cut(s)	136, 446
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstPI	GGTNACC	1 cut(s)	199
BstSFI	CTRYAG	1 cut(s)	159
BstUI	CGCG	2 cut(s)	186, 215
BstV1I	GCAGC	2 cut(s)	145, 173
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	213
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	177
Cac8I	GCNNGC	2 cut(s)	180, 184
CciI	TCATGA	1 cut(s)	459
CfoI	GCGC	1 cut(s)	178
Cfr10I	RCCGGY	1 cut(s)	14
Cfr42I	CCGCGG	1 cut(s)	216
CspCI	CAANNNNNGTGG	2 cut(s)	241, 276
CviAII	CATG	1 cut(s)	460
CviJI	RGCY	3 cut(s)	5, 158, 411
CviKI_1	RGCY	3 cut(s)	5, 158, 411
DdeI	CTNAG	2 cut(s)	127, 407
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	296, 347
EarI	CTCTTC	2 cut(s)	296, 347
EciI	GGCGGA	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	413
Eco91I	GGTNACC	1 cut(s)	199
EcoO65I	GGTNACC	1 cut(s)	199
EcoT22I	ATGCAT	1 cut(s)	145
EcoT38I	GRGCYC	1 cut(s)	413
FaeI	CATG	1 cut(s)	463
FaiI	YATR	9 cut(s)	20, 22, 399, 461, 467, 478, 492, 494, 496
FatI	CATG	1 cut(s)	459
FauNDI	CATATG	1 cut(s)	20
Fnu4HI	GCNGC	4 cut(s)	159, 162, 213, 216
FriOI	GRGCYC	1 cut(s)	413
Fsp4HI	GCNGC	4 cut(s)	159, 162, 213, 216
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	4 cut(s)	159, 162, 213, 216
HaeII	RGCGCY	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	15
HhaI	GCGC	1 cut(s)	178
Hin1II	CATG	1 cut(s)	463
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HinfI	GANTC	1 cut(s)	439
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	4 cut(s)	21, 69, 211, 232
Hpy188I	TCNGA	2 cut(s)	408, 438
Hpy188III	TCNNGA	1 cut(s)	460
HpyAV	CCTTC	2 cut(s)	221, 306
HpyCH4V	TGCA	4 cut(s)	143, 161, 252, 480
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	2 cut(s)	127, 407
Hsp92II	CATG	1 cut(s)	463
HspAI	GCGC	1 cut(s)	176
KspI	CCGCGG	1 cut(s)	216
LmnI	GCTCC	1 cut(s)	155
LpnPI	CCDG	3 cut(s)	28, 164, 217
Lsp1109I	GCAGC	2 cut(s)	145, 173
LweI	GCATC	2 cut(s)	130, 199
MaeIII	GTNAC	1 cut(s)	199
MboII	GAAGA	4 cut(s)	310, 313, 364, 377
MhlI	GDGCHC	1 cut(s)	413
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	113, 481
MluI	ACGCGT	1 cut(s)	184
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	448
MmeI	TCCRAC	3 cut(s)	68, 159, 306
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	145
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	464
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	164, 215
MspI	CCGG	1 cut(s)	15
MvnI	CGCG	2 cut(s)	186, 215
MwoI	GCNNNNNNNGC	1 cut(s)	167
NdeI	CATATG	1 cut(s)	20
NlaIII	CATG	1 cut(s)	463
NlaIV	GGNNCC	1 cut(s)	121
NmuCI	GTSAC	1 cut(s)	199
NsiI	ATGCAT	1 cut(s)	145
PagI	TCATGA	1 cut(s)	459
PkrI	GCNGC	4 cut(s)	160, 163, 214, 217
PleI	GAGTC	1 cut(s)	447
PpsI	GAGTC	1 cut(s)	447
PspEI	GGTNACC	1 cut(s)	199
PspN4I	GGNNCC	1 cut(s)	121
PstI	CTGCAG	1 cut(s)	163
RseI	CAYNNNNRTG	1 cut(s)	464
SacII	CCGCGG	1 cut(s)	216
SatI	GCNGC	4 cut(s)	159, 162, 213, 216
SchI	GAGTC	1 cut(s)	448
SduI	GDGCHC	1 cut(s)	413
SetI	ASST	6 cut(s)	43, 160, 201, 232, 243, 450
SfaNI	GCATC	2 cut(s)	130, 199
SfcI	CTRYAG	1 cut(s)	159
Sfr303I	CCGCGG	1 cut(s)	216
SgrBI	CCGCGG	1 cut(s)	216
SmiMI	CAYNNNNRTG	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	2 cut(s)	113, 481
SsiI	CCGC	5 cut(s)	164, 213, 215, 218, 316
TasI	AATT	2 cut(s)	113, 481
TauI	GCSGC	2 cut(s)	215, 218
TscAI	CASTG	1 cut(s)	177
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	2 cut(s)	158, 161
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	3 cut(s)	15, 369, 448
TspRI	CASTG	1 cut(s)	177
XapI	RAATTY	1 cut(s)	113
XcmI	CCANNNNNNNNNTGG	1 cut(s)	142
Zsp2I	ATGCAT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.