Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011492

Physical Location & Seq

Genomic Coordinates Reverse (-)

4447259 .. 4448675

Gene Structure 1417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G13780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGTTTGCATCAGGCGAGCGACGGTGGATGATCTGCTGGCGATGCAAGCCTGCAATCTCATGTGTCTTCCTGAGAACTACCAGATGAAGTACTACCTCTACCATATCCTCTCATGGCCTCAGCTTCTCTACGTCGCCGAGGACTACAATGGTCGCATCGTTGGCTATGTCTTGGCTAAGATGGAGGAAGAGAGCAACGAGTGCCACGGCCACATCACTTCTCTCGCCGTTCTTCGTACCCATCGCAAGCTCGGTCTCGCCACTAAGCTCATGACCGCCGCTCAAGCTGCCATGGAACAGGTTTACGAGGCTGAGTATGTTTCGTTGCATGTGAGGAGAAGTAACCGAGCAGCATTCAATCTATACACTGAGACATTAGGCTACAAGATTAATGATGTAGAAGCAAAGTACTACGCCGATGGGGAGGATGCTTATGACATGCGGAAGAATCTCAAGGGGAAGCAGAACCATCACCACGCCCACGGTCATCATCATCACCATGGAGGAGGATGTTGTTCTGGTGATGCAAAAGTTGTAGAAACAGCTCAAGCCGTAGATGGTAAAGCAGTTTCCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004596 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006950 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010035 GO:0010154 GO:0010467 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0017198 GO:0018002 GO:0018193 GO:0018200 GO:0018209 GO:0019538 GO:0022414 GO:0022626 GO:0030920 GO:0031248 GO:0031365 GO:0031414 GO:0031415 GO:0032501 GO:0032502 GO:0032991 GO:0034212 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051604 GO:0061458 GO:0071704 GO:1901564 GO:1901700 GO:1902493 GO:1902494 GO:1990189 GO:1990190 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

192

Amino Acids

21.71

Weight (kDa)

6.91

Isoelectric Point (pI)

38.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	21 - 128	5.7e-18	Acetyltransferase (GNAT) family
Acetyltransf_7	PF13508	42 - 129	3.7e-10	Acetyltransferase (GNAT) domain
Acetyltransf_10	PF13673	43 - 151	3.3e-10	Acetyltransferase (GNAT) domain
FR47	PF08445	69 - 131	4.2e-06	FR47-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0011492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13780
fragaria_vesca	FvH4_7g01790
malus_domestica	MD02G1300400.v1.1 MD07G1016300.v1.1 MD07G1016800.v1.1 MD07G1023300.v1.1
prunus_persica	Prupe.2G024200_v2.0.a1 Prupe.2G024200_v2.0.a1
pyrus_communis	pycom07g01770
rosa_chinensis	RchiOBHm_Chr1g0318401
rosa_laevigata	RLG00000030541
rosa_multiflora	Rmu_sc0002662.1_g000015 Rmu_sc0003936.1_g000038
rosa_roxburghii	Rroxscaffold_4G00329270
rosa_rugosa	Rorug01G0021000
rosa_samantha	Rh1AG033100 Rh1BG028900 Rh1CG031400 Rh1DG038100
rosa_wichuraiana	Rw1G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	281
AciI	CCGC	3 cut(s)	276, 279, 442
AcoI	YGGCCR	1 cut(s)	208
AfaI	GTAC	3 cut(s)	92, 238, 410
AgsI	TTSAA	1 cut(s)	358
AluBI	AGCT	5 cut(s)	124, 250, 268, 287, 545
AluI	AGCT	5 cut(s)	124, 250, 268, 287, 545
Alw26I	GTCTC	2 cut(s)	260, 365
AoxI	GGCC	2 cut(s)	116, 208
ApeKI	GCWGC	2 cut(s)	287, 350
AseI	ATTAAT	1 cut(s)	390
AsuHPI	GGTGA	3 cut(s)	464, 488, 533
BbsI	GAAGAC	1 cut(s)	59
BbvCI	CCTCAGC	1 cut(s)	120
BbvI	GCAGC	2 cut(s)	274, 362
BccI	CCATC	5 cut(s)	175, 249, 413, 477, 551
BceAI	ACGGC	3 cut(s)	212, 223, 536
BcoDI	GTCTC	2 cut(s)	260, 365
BisI	GCNGC	3 cut(s)	279, 288, 351
BlsI	GCNGC	3 cut(s)	280, 289, 352
BmcAI	AGTACT	2 cut(s)	92, 410
BmsI	GCATC	5 cut(s)	18, 33, 165, 418, 514
BpiI	GAAGAC	1 cut(s)	59
Bpu10I	CCTNAGC	1 cut(s)	120
BpuEI	CTTGAG	3 cut(s)	267, 437, 531
BsaI	GGTCTC	1 cut(s)	260
BsaJI	CCNNGG	5 cut(s)	138, 205, 291, 481, 499
BseDI	CCNNGG	5 cut(s)	138, 205, 291, 481, 499
BseGI	GGATG	3 cut(s)	34, 433, 515
BseMII	CTCAG	4 cut(s)	63, 134, 303, 360
BseRI	GAGGAG	2 cut(s)	349, 519
BseXI	GCAGC	2 cut(s)	274, 362
BshFI	GGCC	2 cut(s)	118, 210
BsmAI	GTCTC	2 cut(s)	260, 365
BsmI	GAATGC	1 cut(s)	353
BsnI	GGCC	2 cut(s)	118, 210
Bso31I	GGTCTC	1 cut(s)	260
Bsp143I	GATC	1 cut(s)	31
Bsp19I	CCATGG	2 cut(s)	291, 499
BspACI	CCGC	3 cut(s)	276, 279, 442
BspANI	GGCC	2 cut(s)	118, 210
BspCNI	CTCAG	4 cut(s)	64, 133, 304, 361
BspHI	TCATGA	1 cut(s)	270
BspTNI	GGTCTC	1 cut(s)	260
BsrBI	CCGCTC	1 cut(s)	281
BssECI	CCNNGG	5 cut(s)	138, 205, 291, 481, 499
BssMI	GATC	1 cut(s)	31
BssT1I	CCWWGG	2 cut(s)	291, 499
Bst4CI	ACNGT	2 cut(s)	25, 485
Bst6I	CTCTTC	1 cut(s)	183
BstAPI	GCANNNNNTGC	1 cut(s)	201
BstC8I	GCNNGC	5 cut(s)	18, 39, 48, 52, 248
BstDEI	CTNAG	6 cut(s)	72, 120, 177, 264, 312, 369
BstDSI	CCRYGG	4 cut(s)	205, 291, 481, 499
BstF5I	GGATG	3 cut(s)	34, 433, 515
BstKTI	GATC	1 cut(s)	34
BstMAI	GTCTC	2 cut(s)	260, 365
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	6 cut(s)	43, 47, 162, 201, 284, 287
BstNSI	RCATGY	2 cut(s)	332, 442
BstV1I	GCAGC	2 cut(s)	274, 362
BstV2I	GAAGAC	1 cut(s)	59
BsuRI	GGCC	2 cut(s)	118, 210
BtgI	CCRYGG	4 cut(s)	205, 291, 481, 499
BtgZI	GCGATG	2 cut(s)	56, 227
BtsCI	GGATG	3 cut(s)	34, 433, 515
BtsIMutI	CAGTG	1 cut(s)	366
Cac8I	GCNNGC	5 cut(s)	18, 39, 48, 52, 248
CciI	TCATGA	1 cut(s)	270
Csp6I	GTAC	3 cut(s)	91, 237, 409
CviAII	CATG	7 cut(s)	61, 114, 271, 292, 329, 439, 500
CviQI	GTAC	3 cut(s)	91, 237, 409
DdeI	CTNAG	6 cut(s)	72, 120, 177, 264, 312, 369
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
EaeI	YGGCCR	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
Eco130I	CCWWGG	2 cut(s)	291, 499
Eco31I	GGTCTC	1 cut(s)	260
EcoT14I	CCWWGG	2 cut(s)	291, 499
ErhI	CCWWGG	2 cut(s)	291, 499
FaeI	CATG	7 cut(s)	64, 117, 274, 295, 332, 442, 503
FatI	CATG	7 cut(s)	60, 113, 270, 291, 328, 438, 499
Fnu4HI	GCNGC	3 cut(s)	279, 288, 351
FokI	GGATG	3 cut(s)	41, 440, 522
Fsp4HI	GCNGC	3 cut(s)	279, 288, 351
GluI	GCNGC	3 cut(s)	279, 288, 351
HaeIII	GGCC	2 cut(s)	118, 210
Hin1II	CATG	7 cut(s)	64, 117, 274, 295, 332, 442, 503
HinfI	GANTC	1 cut(s)	448
HphI	GGTGA	3 cut(s)	464, 488, 533
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188III	TCNNGA	2 cut(s)	71, 271
Hpy8I	GTNNAC	1 cut(s)	304
Hpy99I	CGWCG	2 cut(s)	25, 137
HpyCH4III	ACNGT	2 cut(s)	25, 485
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	5 cut(s)	9, 46, 54, 328, 527
HpyF10VI	GCNNNNNNNGC	6 cut(s)	43, 47, 162, 201, 284, 287
HpyF3I	CTNAG	6 cut(s)	72, 120, 177, 264, 312, 369
HpySE526I	ACGT	1 cut(s)	132
Hsp92II	CATG	7 cut(s)	64, 117, 274, 295, 332, 442, 503
Kzo9I	GATC	1 cut(s)	31
LpnPI	CCDG	6 cut(s)	23, 64, 84, 95, 284, 504
Lsp1109I	GCAGC	2 cut(s)	274, 362
LweI	GCATC	5 cut(s)	18, 33, 165, 418, 514
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	1 cut(s)	341
MalI	GATC	1 cut(s)	33
MbiI	CCGCTC	1 cut(s)	281
MboI	GATC	1 cut(s)	31
MboII	GAAGA	4 cut(s)	59, 200, 224, 457
MseI	TTAA	1 cut(s)	390
MslI	CAYNNNNRTG	1 cut(s)	498
Mva1269I	GAATGC	1 cut(s)	353
MwoI	GCNNNNNNNGC	6 cut(s)	43, 47, 162, 201, 284, 287
NcoI	CCATGG	2 cut(s)	291, 499
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	7 cut(s)	64, 117, 274, 295, 332, 442, 503
NmeAIII	GCCGAG	1 cut(s)	163
NspI	RCATGY	2 cut(s)	332, 442
PagI	TCATGA	1 cut(s)	270
PctI	GAATGC	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	448
PkrI	GCNGC	3 cut(s)	280, 289, 352
PshBI	ATTAAT	1 cut(s)	390
RsaI	GTAC	3 cut(s)	92, 238, 410
RsaNI	GTAC	3 cut(s)	91, 237, 409
RseI	CAYNNNNRTG	1 cut(s)	498
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	3 cut(s)	279, 288, 351
Sau3AI	GATC	1 cut(s)	31
ScaI	AGTACT	2 cut(s)	92, 410
SetI	ASST	8 cut(s)	99, 126, 135, 252, 270, 289, 303, 547
SfaNI	GCATC	5 cut(s)	18, 33, 165, 418, 514
SmiMI	CAYNNNNRTG	1 cut(s)	498
SmlI	CTYRAG	3 cut(s)	282, 452, 546
SmoI	CTYRAG	3 cut(s)	282, 452, 546
SsiI	CCGC	3 cut(s)	276, 279, 442
StyI	CCWWGG	2 cut(s)	291, 499
TaaI	ACNGT	2 cut(s)	25, 485
TaiI	ACGT	1 cut(s)	135
TaqII	GACCGA	1 cut(s)	242
TatI	WGTACW	2 cut(s)	90, 408
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	1 cut(s)	448
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TscAI	CASTG	1 cut(s)	373
TseI	GCWGC	2 cut(s)	287, 350
TspDTI	ATGAA	1 cut(s)	101
TspRI	CASTG	1 cut(s)	373
VspI	ATTAAT	1 cut(s)	390
XceI	RCATGY	2 cut(s)	332, 442
ZrmI	AGTACT	2 cut(s)	92, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.