Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0011492

Physical Location & Seq

Genomic Coordinates Forward (+)

6221891 .. 6223409

Gene Structure 1519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG031400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGACGACCTGCTGGCCATGCAAGCCTGCAACCTCTTCTGCCTCCCGGAAAACTACCAGATGAAGTACTACCTCTACCACATCCTCTCGTGGCCGCAGTTGCTCTACGTCGCCGAAGACTACAACGGCCGCATCGTCGGCTACGTCTTGGCCAAGATGGAGGAGGAGAGCAACGAGTGCCACGGCCACATCACCTCCCTCGCCGTCCTCCGCACCCACCGCAAACTCGGCCTCGCCACCAAGCTCATGAGCGCCGCCCAAAACGCCATGGAGCAGGTCTTCGCCGCCGAGTACGTCTCGCTTCACGTCAGGAAGAGCAACCGCGCGGCGTTCAACTTGTACACGGAGACGCTGGGGTATAAGATTCATGATGTGGAGGCTAAGTACTATGCTGATGGTGAAGATGCTTATGATATGAGGAAGGAGTTGAAGGGGAAGAAGGCGCATGCGGGGCATGTTAATTTGTCAAATACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004596 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006950 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010035 GO:0010154 GO:0010467 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0017198 GO:0018002 GO:0018193 GO:0018200 GO:0018209 GO:0019538 GO:0022414 GO:0022626 GO:0030920 GO:0031248 GO:0031365 GO:0031414 GO:0031415 GO:0032501 GO:0032502 GO:0032991 GO:0034212 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051604 GO:0061458 GO:0071704 GO:1901564 GO:1901700 GO:1902493 GO:1902494 GO:1990189 GO:1990190 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

158

Amino Acids

18.1

Weight (kDa)

6.44

Isoelectric Point (pI)

40.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	13 - 120	3.3e-18	Acetyltransferase (GNAT) family
Acetyltransf_7	PF13508	34 - 121	5.5e-10	Acetyltransferase (GNAT) domain
Acetyltransf_10	PF13673	35 - 143	1e-10	Acetyltransferase (GNAT) domain
FR47	PF08445	61 - 123	2.2e-06	FR47-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13780
fragaria_vesca	FvH4_7g01790
malus_domestica	MD02G1300400.v1.1 MD07G1016300.v1.1 MD07G1016800.v1.1 MD07G1023300.v1.1
prunus_persica	Prupe.2G024200_v2.0.a1 Prupe.2G024200_v2.0.a1
pyrus_communis	pycom07g01770
rosa_chinensis	RchiOBHm_Chr1g0318401
rosa_laevigata	RLG00000030541
rosa_multiflora	Rmu_sc0002662.1_g000015 Rmu_sc0003936.1_g000038
rosa_roxburghii	Rroxscaffold_4G00329270
rosa_rugosa	Rorug01G0021000
rosa_samantha	Rh1AG033100 Rh1BG028900 Rh1CG031400 Rh1DG038100
rosa_wichuraiana	Rw1G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	18, 265
AccII	CGCG	2 cut(s)	324, 326
AciI	CCGC	9 cut(s)	95, 130, 211, 220, 255, 285, 322, 326, 449
AcoI	YGGCCR	5 cut(s)	15, 92, 127, 150, 184
AfaI	GTAC	4 cut(s)	68, 293, 341, 386
AgsI	TTSAA	2 cut(s)	334, 430
AjiI	CACGTC	1 cut(s)	307
AluBI	AGCT	1 cut(s)	244
AluI	AGCT	1 cut(s)	244
Alw26I	GTCTC	2 cut(s)	301, 341
AoxI	GGCC	6 cut(s)	15, 92, 127, 150, 184, 229
AspLEI	GCGC	3 cut(s)	254, 326, 445
AsuC2I	CCSGG	1 cut(s)	47
AsuHPI	GGTGA	2 cut(s)	184, 410
BalI	TGGCCA	2 cut(s)	17, 152
BauI	CACGAG	1 cut(s)	88
BbsI	GAAGAC	2 cut(s)	123, 271
BccI	CCATC	2 cut(s)	151, 389
BceAI	ACGGC	3 cut(s)	142, 188, 199
BcnI	CCSGG	1 cut(s)	47
BcoDI	GTCTC	2 cut(s)	301, 341
BfoI	RGCGCY	1 cut(s)	255
BfuAI	ACCTGC	2 cut(s)	18, 265
BisI	GCNGC	5 cut(s)	95, 130, 255, 285, 327
BlsI	GCNGC	5 cut(s)	96, 131, 256, 286, 328
BmcAI	AGTACT	2 cut(s)	68, 386
Bme1390I	CCNGG	1 cut(s)	47
BmgBI	CACGTC	1 cut(s)	307
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	2 cut(s)	141, 394
BpiI	GAAGAC	2 cut(s)	123, 271
BplI	GAGNNNNNCTC	2 cut(s)	281, 313
BpuMI	CCSGG	1 cut(s)	47
BsaJI	CCNNGG	2 cut(s)	181, 267
BsaXI	ACNNNNNCTCC	4 cut(s)	179, 209, 368, 398
BseDI	CCNNGG	2 cut(s)	181, 267
BseGI	GGATG	1 cut(s)	81
BseRI	GAGGAG	2 cut(s)	176, 179
BseX3I	CGGCCG	1 cut(s)	127
BseYI	CCCAGC	1 cut(s)	352
Bsh1236I	CGCG	2 cut(s)	324, 326
Bsh1285I	CGRYCG	1 cut(s)	130
BshFI	GGCC	6 cut(s)	17, 94, 129, 152, 186, 231
BsiEI	CGRYCG	1 cut(s)	130
BsiSI	CCGG	1 cut(s)	47
BsmAI	GTCTC	2 cut(s)	301, 341
BsmBI	CGTCTC	2 cut(s)	301, 341
BsnI	GGCC	6 cut(s)	17, 94, 129, 152, 186, 231
Bsp1407I	TGTACA	1 cut(s)	339
Bsp19I	CCATGG	1 cut(s)	267
BspACI	CCGC	9 cut(s)	95, 130, 211, 220, 255, 285, 322, 326, 449
BspANI	GGCC	6 cut(s)	17, 94, 129, 152, 186, 231
BspFNI	CGCG	2 cut(s)	324, 326
BspHI	TCATGA	2 cut(s)	246, 367
BspMI	ACCTGC	2 cut(s)	18, 265
BspQI	GCTCTTC	1 cut(s)	308
BsrGI	TGTACA	1 cut(s)	339
BssECI	CCNNGG	2 cut(s)	181, 267
BssSI	CACGAG	1 cut(s)	88
BssT1I	CCWWGG	1 cut(s)	267
Bst2BI	CACGAG	1 cut(s)	88
Bst6I	CTCTTC	2 cut(s)	41, 308
BstAPI	GCANNNNNTGC	1 cut(s)	177
BstAUI	TGTACA	1 cut(s)	339
BstC8I	GCNNGC	4 cut(s)	15, 24, 28, 447
BstDEI	CTNAG	1 cut(s)	381
BstDSI	CCRYGG	2 cut(s)	181, 267
BstF5I	GGATG	1 cut(s)	81
BstFNI	CGCG	2 cut(s)	324, 326
BstH2I	RGCGCY	1 cut(s)	255
BstHHI	GCGC	3 cut(s)	254, 326, 445
BstMAI	GTCTC	2 cut(s)	301, 341
BstMCI	CGRYCG	1 cut(s)	130
BstMWI	GCNNNNNNNGC	9 cut(s)	19, 23, 100, 138, 177, 219, 228, 263, 451
BstNSI	RCATGY	2 cut(s)	449, 458
BstSCI	CCNGG	1 cut(s)	45
BstUI	CGCG	2 cut(s)	324, 326
BstV2I	GAAGAC	2 cut(s)	123, 271
BstZI	CGGCCG	1 cut(s)	127
BsuRI	GGCC	6 cut(s)	17, 94, 129, 152, 186, 231
BtgI	CCRYGG	2 cut(s)	181, 267
BtrI	CACGTC	1 cut(s)	307
BtsCI	GGATG	1 cut(s)	81
BveI	ACCTGC	2 cut(s)	18, 265
Cac8I	GCNNGC	4 cut(s)	15, 24, 28, 447
CciI	TCATGA	2 cut(s)	246, 367
CfoI	GCGC	3 cut(s)	254, 326, 445
CseI	GACGC	1 cut(s)	358
Csp6I	GTAC	4 cut(s)	67, 292, 340, 385
CviAII	CATG	6 cut(s)	19, 247, 268, 368, 446, 455
CviQI	GTAC	4 cut(s)	67, 292, 340, 385
DdeI	CTNAG	1 cut(s)	381
EaeI	YGGCCR	5 cut(s)	15, 92, 127, 150, 184
EagI	CGGCCG	1 cut(s)	127
Eam1104I	CTCTTC	2 cut(s)	41, 308
EarI	CTCTTC	2 cut(s)	41, 308
EclXI	CGGCCG	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	267
Eco52I	CGGCCG	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	267
Esp3I	CGTCTC	2 cut(s)	301, 341
FaeI	CATG	6 cut(s)	22, 250, 271, 371, 449, 458
FatI	CATG	6 cut(s)	18, 246, 267, 367, 445, 454
FauI	CCCGC	1 cut(s)	442
Fnu4HI	GCNGC	5 cut(s)	95, 130, 255, 285, 327
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	5 cut(s)	95, 130, 255, 285, 327
GlaI	GCGC	3 cut(s)	253, 325, 444
GluI	GCNGC	5 cut(s)	95, 130, 255, 285, 327
GsaI	CCCAGC	1 cut(s)	356
HaeII	RGCGCY	1 cut(s)	255
HaeIII	GGCC	6 cut(s)	17, 94, 129, 152, 186, 231
HapII	CCGG	1 cut(s)	47
HgaI	GACGC	1 cut(s)	358
HhaI	GCGC	3 cut(s)	254, 326, 445
Hin1II	CATG	6 cut(s)	22, 250, 271, 371, 449, 458
Hin6I	GCGC	3 cut(s)	252, 324, 443
HinP1I	GCGC	3 cut(s)	252, 324, 443
HinfI	GANTC	1 cut(s)	364
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	2 cut(s)	184, 410
Hpy166II	GTNNAC	1 cut(s)	342
Hpy188III	TCNNGA	3 cut(s)	247, 310, 368
Hpy8I	GTNNAC	1 cut(s)	342
Hpy99I	CGWCG	2 cut(s)	113, 140
HpyAV	CCTTC	3 cut(s)	415, 424, 433
HpyCH4IV	ACGT	4 cut(s)	108, 144, 294, 306
HpyCH4V	TGCA	2 cut(s)	22, 30
HpyF10VI	GCNNNNNNNGC	9 cut(s)	19, 23, 100, 138, 177, 219, 228, 263, 451
HpyF3I	CTNAG	1 cut(s)	381
HpySE526I	ACGT	4 cut(s)	108, 144, 294, 306
Hsp92II	CATG	6 cut(s)	22, 250, 271, 371, 449, 458
HspAI	GCGC	3 cut(s)	252, 324, 443
LguI	GCTCTTC	1 cut(s)	308
LmnI	GCTCC	1 cut(s)	271
LpnPI	CCDG	7 cut(s)	23, 40, 60, 71, 260, 295, 338
LweI	GCATC	2 cut(s)	141, 394
MaeII	ACGT	4 cut(s)	108, 144, 294, 306
MboII	GAAGA	6 cut(s)	28, 128, 271, 325, 413, 448
MlsI	TGGCCA	2 cut(s)	17, 152
MluCI	AATT	1 cut(s)	460
MluNI	TGGCCA	2 cut(s)	17, 152
Mox20I	TGGCCA	2 cut(s)	17, 152
MscI	TGGCCA	2 cut(s)	17, 152
MseI	TTAA	1 cut(s)	459
Msp20I	TGGCCA	2 cut(s)	17, 152
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	1 cut(s)	47
MvnI	CGCG	2 cut(s)	324, 326
MwoI	GCNNNNNNNGC	9 cut(s)	19, 23, 100, 138, 177, 219, 228, 263, 451
NciI	CCSGG	1 cut(s)	47
NcoI	CCATGG	1 cut(s)	267
NlaIII	CATG	6 cut(s)	22, 250, 271, 371, 449, 458
NmeAIII	GCCGAG	2 cut(s)	207, 313
NspI	RCATGY	2 cut(s)	449, 458
PaeI	GCATGC	1 cut(s)	449
PagI	TCATGA	2 cut(s)	246, 367
PciSI	GCTCTTC	1 cut(s)	308
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 141
PfeI	GAWTC	1 cut(s)	364
PfoI	TCCNGGA	1 cut(s)	45
PkrI	GCNGC	5 cut(s)	96, 131, 256, 286, 328
PspFI	CCCAGC	1 cut(s)	352
RsaI	GTAC	4 cut(s)	68, 293, 341, 386
RsaNI	GTAC	4 cut(s)	67, 292, 340, 385
SapI	GCTCTTC	1 cut(s)	308
SaqAI	TTAA	1 cut(s)	459
SatI	GCNGC	5 cut(s)	95, 130, 255, 285, 327
ScaI	AGTACT	2 cut(s)	68, 386
ScrFI	CCNGG	1 cut(s)	47
SfaNI	GCATC	2 cut(s)	141, 394
SphI	GCATGC	1 cut(s)	449
Sse9I	AATT	1 cut(s)	460
SsiI	CCGC	9 cut(s)	95, 130, 211, 220, 255, 285, 322, 326, 449
StyD4I	CCNGG	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	267
TaiI	ACGT	4 cut(s)	111, 147, 297, 309
TasI	AATT	1 cut(s)	460
TatI	WGTACW	3 cut(s)	66, 339, 384
TauI	GCSGC	5 cut(s)	97, 132, 257, 287, 329
TfiI	GAWTC	1 cut(s)	364
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TspDTI	ATGAA	2 cut(s)	77, 356
TspGWI	ACGGA	1 cut(s)	359
XceI	RCATGY	2 cut(s)	449, 458
ZrmI	AGTACT	2 cut(s)	68, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.