Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0011492

Physical Location & Seq

Genomic Coordinates Forward (+)

3969294 .. 3972229

Gene Structure 2936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG028900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGTGTGCATACGCAAGGCCACAATGGACGACCTGCTGGCCATGCAAGCCTGCAACCTCTTCTGCCTCCCGGAAAACTACCAGATGAAGTACTACCTCTACCACATCCTCTCCTGGCCGCAGTTGCTCTACGTCGCCGAAGACTACAACGGCCGCATCGTCGGCTACGTCTTGGCCAAGATGGAGGAGGAGAGCAACGAGTGCCACGGCCACATCACCTCCCTCGCCGTCCTCCGCACCCACCGCAAACTCGGCCTCGCCACCAAGCTCATGAGCGCCGCCCAAAACGCCATGGAGCAGGTCTTCGCCGCCGAGTACGTCTCGCTTCACGTCAGGAAGAGCAACCGCGCCGCGTTCAACTTGTACACGGAGACTCTGGGGTATAAGATTCATGATGTGGAGGCTAAGTACTATGCTGATGGTGAAGATGCTTATGATATGAGGAAGGAGTTGAAGGGGAAGAAGGCGCATGCTCATGCGGGGCATGGTCATGCGCATCATGGCCATCACCACCACCATGAGGGCGGCTGTTGCTCCGCGCCGGCCGAGACGAAAGGCGGGGCCAAGGGGAATGCCAAGGCTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004596 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006950 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010035 GO:0010154 GO:0010467 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0017198 GO:0018002 GO:0018193 GO:0018200 GO:0018209 GO:0019538 GO:0022414 GO:0022626 GO:0030920 GO:0031248 GO:0031365 GO:0031414 GO:0031415 GO:0032501 GO:0032502 GO:0032991 GO:0034212 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051604 GO:0061458 GO:0071704 GO:1901564 GO:1901700 GO:1902493 GO:1902494 GO:1990189 GO:1990190 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

195

Amino Acids

21.86

Weight (kDa)

7.73

Isoelectric Point (pI)

34.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	21 - 128	6.2e-18	Acetyltransferase (GNAT) family
Acetyltransf_7	PF13508	42 - 129	9.4e-10	Acetyltransferase (GNAT) domain
Acetyltransf_10	PF13673	43 - 151	2e-10	Acetyltransferase (GNAT) domain
FR47	PF08445	69 - 131	3.6e-06	FR47-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13780
fragaria_vesca	FvH4_7g01790
malus_domestica	MD02G1300400.v1.1 MD07G1016300.v1.1 MD07G1016800.v1.1 MD07G1023300.v1.1
prunus_persica	Prupe.2G024200_v2.0.a1 Prupe.2G024200_v2.0.a1
pyrus_communis	pycom07g01770
rosa_chinensis	RchiOBHm_Chr1g0318401
rosa_laevigata	RLG00000030541
rosa_multiflora	Rmu_sc0002662.1_g000015 Rmu_sc0003936.1_g000038
rosa_roxburghii	Rroxscaffold_4G00329270
rosa_rugosa	Rorug01G0021000
rosa_samantha	Rh1AG033100 Rh1BG028900 Rh1CG031400 Rh1DG038100
rosa_wichuraiana	Rw1G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	495
Acc36I	ACCTGC	2 cut(s)	42, 289
AccII	CGCG	3 cut(s)	348, 353, 539
AcoI	YGGCCR	7 cut(s)	39, 116, 151, 174, 208, 502, 543
AfaI	GTAC	4 cut(s)	92, 317, 365, 410
AfiI	CCNNNNNNNGG	1 cut(s)	520
AgsI	TTSAA	2 cut(s)	358, 454
AjiI	CACGTC	1 cut(s)	331
AjnI	CCWGG	1 cut(s)	113
AluBI	AGCT	1 cut(s)	268
AluI	AGCT	1 cut(s)	268
Alw26I	GTCTC	3 cut(s)	325, 365, 542
AspLEI	GCGC	5 cut(s)	278, 350, 469, 496, 541
AspS9I	GGNCC	1 cut(s)	561
AsuC2I	CCSGG	1 cut(s)	71
AsuHPI	GGTGA	3 cut(s)	208, 434, 500
BalI	TGGCCA	3 cut(s)	41, 176, 504
BbsI	GAAGAC	2 cut(s)	147, 295
BccI	CCATC	3 cut(s)	175, 413, 513
BceAI	ACGGC	3 cut(s)	166, 212, 223
BciT130I	CCWGG	1 cut(s)	115
BcnI	CCSGG	1 cut(s)	71
BcoDI	GTCTC	3 cut(s)	325, 365, 542
BfoI	RGCGCY	1 cut(s)	279
BfuAI	ACCTGC	2 cut(s)	42, 289
BisI	GCNGC	6 cut(s)	119, 154, 279, 309, 351, 526
BlsI	GCNGC	6 cut(s)	120, 155, 280, 310, 352, 527
BmcAI	AGTACT	2 cut(s)	92, 410
Bme1390I	CCNGG	2 cut(s)	71, 115
BmgBI	CACGTC	1 cut(s)	331
BmgT120I	GGNCC	1 cut(s)	561
BmiI	GGNNCC	1 cut(s)	562
BmrFI	CCNGG	2 cut(s)	71, 115
BmsI	GCATC	3 cut(s)	165, 418, 505
BpiI	GAAGAC	2 cut(s)	147, 295
BplI	GAGNNNNNCTC	2 cut(s)	305, 337
BpuMI	CCSGG	1 cut(s)	71
BsaJI	CCNNGG	4 cut(s)	205, 291, 564, 576
BsaXI	ACNNNNNCTCC	6 cut(s)	95, 125, 203, 233, 392, 422
Bsc4I	CCNNNNNNNGG	1 cut(s)	520
Bse118I	RCCGGY	1 cut(s)	541
BseBI	CCWGG	1 cut(s)	115
BseDI	CCNNGG	4 cut(s)	205, 291, 564, 576
BseGI	GGATG	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	520
BseRI	GAGGAG	2 cut(s)	200, 203
BseX3I	CGGCCG	2 cut(s)	151, 543
Bsh1236I	CGCG	3 cut(s)	348, 353, 539
Bsh1285I	CGRYCG	2 cut(s)	154, 546
BsiEI	CGRYCG	2 cut(s)	154, 546
BsiSI	CCGG	2 cut(s)	71, 542
BslI	CCNNNNNNNGG	1 cut(s)	520
BsmAI	GTCTC	3 cut(s)	325, 365, 542
BsmBI	CGTCTC	2 cut(s)	325, 542
BsmI	GAATGC	1 cut(s)	577
Bsp1407I	TGTACA	1 cut(s)	363
Bsp19I	CCATGG	1 cut(s)	291
BspFNI	CGCG	3 cut(s)	348, 353, 539
BspHI	TCATGA	2 cut(s)	270, 391
BspLI	GGNNCC	1 cut(s)	562
BspMI	ACCTGC	2 cut(s)	42, 289
BspQI	GCTCTTC	1 cut(s)	332
BsrFI	RCCGGY	1 cut(s)	541
BsrGI	TGTACA	1 cut(s)	363
BssAI	RCCGGY	1 cut(s)	541
BssECI	CCNNGG	4 cut(s)	205, 291, 564, 576
BssT1I	CCWWGG	3 cut(s)	291, 564, 576
Bst2UI	CCWGG	1 cut(s)	115
Bst6I	CTCTTC	2 cut(s)	65, 332
BstAPI	GCANNNNNTGC	1 cut(s)	201
BstAUI	TGTACA	1 cut(s)	363
BstC8I	GCNNGC	5 cut(s)	39, 48, 52, 471, 543
BstDEI	CTNAG	1 cut(s)	405
BstDSI	CCRYGG	2 cut(s)	205, 291
BstF5I	GGATG	1 cut(s)	105
BstFNI	CGCG	3 cut(s)	348, 353, 539
BstH2I	RGCGCY	1 cut(s)	279
BstHHI	GCGC	5 cut(s)	278, 350, 469, 496, 541
BstMAI	GTCTC	3 cut(s)	325, 365, 542
BstMCI	CGRYCG	2 cut(s)	154, 546
BstMWI	GCNNNNNNNGC	9 cut(s)	43, 47, 124, 162, 201, 243, 252, 287, 531
BstNI	CCWGG	1 cut(s)	115
BstNSI	RCATGY	1 cut(s)	473
BstSCI	CCNGG	2 cut(s)	69, 113
BstUI	CGCG	3 cut(s)	348, 353, 539
BstV2I	GAAGAC	2 cut(s)	147, 295
BstZI	CGGCCG	2 cut(s)	151, 543
BtgI	CCRYGG	2 cut(s)	205, 291
BtrI	CACGTC	1 cut(s)	331
BtsCI	GGATG	1 cut(s)	105
BveI	ACCTGC	2 cut(s)	42, 289
Cac8I	GCNNGC	5 cut(s)	39, 48, 52, 471, 543
CciI	TCATGA	2 cut(s)	270, 391
CfoI	GCGC	5 cut(s)	278, 350, 469, 496, 541
Cfr10I	RCCGGY	1 cut(s)	541
Cfr13I	GGNCC	1 cut(s)	561
Csp6I	GTAC	4 cut(s)	91, 316, 364, 409
CviQI	GTAC	4 cut(s)	91, 316, 364, 409
DdeI	CTNAG	1 cut(s)	405
EaeI	YGGCCR	7 cut(s)	39, 116, 151, 174, 208, 502, 543
EagI	CGGCCG	2 cut(s)	151, 543
Eam1104I	CTCTTC	2 cut(s)	65, 332
EarI	CTCTTC	2 cut(s)	65, 332
EclXI	CGGCCG	2 cut(s)	151, 543
Eco130I	CCWWGG	3 cut(s)	291, 564, 576
Eco52I	CGGCCG	2 cut(s)	151, 543
EcoRII	CCWGG	1 cut(s)	113
EcoT14I	CCWWGG	3 cut(s)	291, 564, 576
ErhI	CCWWGG	3 cut(s)	291, 564, 576
Esp3I	CGTCTC	2 cut(s)	325, 542
FauI	CCCGC	2 cut(s)	472, 551
Fnu4HI	GCNGC	6 cut(s)	119, 154, 279, 309, 351, 526
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	6 cut(s)	119, 154, 279, 309, 351, 526
FspAI	RTGCGCAY	1 cut(s)	495
FspI	TGCGCA	1 cut(s)	495
GlaI	GCGC	5 cut(s)	277, 349, 468, 495, 540
GluI	GCNGC	6 cut(s)	119, 154, 279, 309, 351, 526
HaeII	RGCGCY	1 cut(s)	279
HapII	CCGG	2 cut(s)	71, 542
HhaI	GCGC	5 cut(s)	278, 350, 469, 496, 541
Hin6I	GCGC	5 cut(s)	276, 348, 467, 494, 539
HinP1I	GCGC	5 cut(s)	276, 348, 467, 494, 539
HinfI	GANTC	2 cut(s)	373, 388
HpaII	CCGG	2 cut(s)	71, 542
HphI	GGTGA	3 cut(s)	208, 434, 500
Hpy166II	GTNNAC	1 cut(s)	366
Hpy188III	TCNNGA	3 cut(s)	271, 334, 392
Hpy8I	GTNNAC	1 cut(s)	366
Hpy99I	CGWCG	2 cut(s)	137, 164
HpyAV	CCTTC	3 cut(s)	439, 448, 457
HpyCH4IV	ACGT	4 cut(s)	132, 168, 318, 330
HpyCH4V	TGCA	3 cut(s)	9, 46, 54
HpyF10VI	GCNNNNNNNGC	9 cut(s)	43, 47, 124, 162, 201, 243, 252, 287, 531
HpyF3I	CTNAG	1 cut(s)	405
HpySE526I	ACGT	4 cut(s)	132, 168, 318, 330
HspAI	GCGC	5 cut(s)	276, 348, 467, 494, 539
KroI	GCCGGC	1 cut(s)	541
KroNI	GCCGGC	1 cut(s)	543
LguI	GCTCTTC	1 cut(s)	332
LmnI	GCTCC	2 cut(s)	295, 539
LweI	GCATC	3 cut(s)	165, 418, 505
MaeII	ACGT	4 cut(s)	132, 168, 318, 330
MboII	GAAGA	6 cut(s)	52, 152, 295, 349, 437, 472
MlsI	TGGCCA	3 cut(s)	41, 176, 504
MluNI	TGGCCA	3 cut(s)	41, 176, 504
MlyI	GAGTC	1 cut(s)	367
Mox20I	TGGCCA	3 cut(s)	41, 176, 504
MroNI	GCCGGC	1 cut(s)	541
MscI	TGGCCA	3 cut(s)	41, 176, 504
MslI	CAYNNNNRTG	3 cut(s)	474, 489, 516
Msp20I	TGGCCA	3 cut(s)	41, 176, 504
MspI	CCGG	2 cut(s)	71, 542
MspR9I	CCNGG	2 cut(s)	71, 115
Mva1269I	GAATGC	1 cut(s)	577
MvaI	CCWGG	1 cut(s)	115
MvnI	CGCG	3 cut(s)	348, 353, 539
MwoI	GCNNNNNNNGC	9 cut(s)	43, 47, 124, 162, 201, 243, 252, 287, 531
NaeI	GCCGGC	1 cut(s)	543
NciI	CCSGG	1 cut(s)	71
NcoI	CCATGG	1 cut(s)	291
NgoMIV	GCCGGC	1 cut(s)	541
NlaIV	GGNNCC	1 cut(s)	562
NmeAIII	GCCGAG	3 cut(s)	231, 337, 571
NsbI	TGCGCA	1 cut(s)	495
NspI	RCATGY	1 cut(s)	473
PaeI	GCATGC	1 cut(s)	473
PagI	TCATGA	2 cut(s)	270, 391
PciSI	GCTCTTC	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	2 cut(s)	156, 165
PctI	GAATGC	1 cut(s)	577
PdiI	GCCGGC	1 cut(s)	543
PfeI	GAWTC	1 cut(s)	388
PfoI	TCCNGGA	1 cut(s)	69
PkrI	GCNGC	6 cut(s)	120, 155, 280, 310, 352, 527
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	113
PspN4I	GGNNCC	1 cut(s)	562
PspPI	GGNCC	1 cut(s)	561
RsaI	GTAC	4 cut(s)	92, 317, 365, 410
RsaNI	GTAC	4 cut(s)	91, 316, 364, 409
RseI	CAYNNNNRTG	3 cut(s)	474, 489, 516
SapI	GCTCTTC	1 cut(s)	332
SatI	GCNGC	6 cut(s)	119, 154, 279, 309, 351, 526
Sau96I	GGNCC	1 cut(s)	561
ScaI	AGTACT	2 cut(s)	92, 410
SchI	GAGTC	1 cut(s)	367
ScrFI	CCNGG	2 cut(s)	71, 115
SfaNI	GCATC	3 cut(s)	165, 418, 505
SmiMI	CAYNNNNRTG	3 cut(s)	474, 489, 516
SphI	GCATGC	1 cut(s)	473
StyD4I	CCNGG	2 cut(s)	69, 113
StyI	CCWWGG	3 cut(s)	291, 564, 576
TaiI	ACGT	4 cut(s)	135, 171, 321, 333
TatI	WGTACW	3 cut(s)	90, 363, 408
TauI	GCSGC	6 cut(s)	121, 156, 281, 311, 353, 528
TfiI	GAWTC	1 cut(s)	388
TspDTI	ATGAA	2 cut(s)	101, 380
TspGWI	ACGGA	1 cut(s)	383
XceI	RCATGY	1 cut(s)	473
ZrmI	AGTACT	2 cut(s)	92, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.