Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0011492

Physical Location & Seq

Genomic Coordinates Reverse (-)

62516614 .. 62517210

Gene Structure 597 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00329270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGTGTGCATACGCAAGGCCACAATGGACGACCTGCTGGCCATGCAAGCCTGCAACCTCTTCTGCCTCCCGGAAAACTACCAGATGAAGTACTACCTCTACCACATCCTCTCCTGGCCGCAGTTGCTCTACGTCGCCGAAGACTACAACGGCCGCATCGTCGGCTACGTCTTGGCCAAGATGGAGGAGGAGAGCAACGAGTGCCACGGCCACATCACCTCCCTCGCCGTCCTCCGCACCCACCGCAAACTCGGCCTCGCCACTAAGCTCATGAGCGCCGCCCAAAACGCCATGGAGCAGGTCTTCGCCGCCGAGTACGTCTCGCTTCACGTCAGGAAGAGCAACCGTGCGGCGTTCAACTTGTACACGGAGACTCTGGGGTATAAGATTCATGATGTGGAGGCGAAGTACTATGCTGATGGTGAAGATGCTTATGATATGAGGAAGGAGTTGAAGGGGAAGAAGGCGCATGCGCATGCGGGGCATGGTCATGCACATCATGGCCATCATCACCACCACCACCACCATGAGGGCGGCTGTTGTTCCGCGCCGGCCGAGACGAAAGGTGGGGCCAAGGCGAATGCCAAGGCTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004596 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006950 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010035 GO:0010154 GO:0010467 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0017198 GO:0018002 GO:0018193 GO:0018200 GO:0018209 GO:0019538 GO:0022414 GO:0022626 GO:0030920 GO:0031248 GO:0031365 GO:0031414 GO:0031415 GO:0032501 GO:0032502 GO:0032991 GO:0034212 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051604 GO:0061458 GO:0071704 GO:1901564 GO:1901700 GO:1902493 GO:1902494 GO:1990189 GO:1990190 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

198

Amino Acids

22.28

Weight (kDa)

7.76

Isoelectric Point (pI)

35.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	21 - 128	6.4e-18	Acetyltransferase (GNAT) family
Acetyltransf_7	PF13508	42 - 129	9.8e-10	Acetyltransferase (GNAT) domain
Acetyltransf_10	PF13673	43 - 151	2e-10	Acetyltransferase (GNAT) domain
FR47	PF08445	69 - 131	3.7e-06	FR47-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13780
fragaria_vesca	FvH4_7g01790
malus_domestica	MD02G1300400.v1.1 MD07G1016300.v1.1 MD07G1016800.v1.1 MD07G1023300.v1.1
prunus_persica	Prupe.2G024200_v2.0.a1 Prupe.2G024200_v2.0.a1
pyrus_communis	pycom07g01770
rosa_chinensis	RchiOBHm_Chr1g0318401
rosa_laevigata	RLG00000030541
rosa_multiflora	Rmu_sc0002662.1_g000015 Rmu_sc0003936.1_g000038
rosa_roxburghii	Rroxscaffold_4G00329270
rosa_rugosa	Rorug01G0021000
rosa_samantha	Rh1AG033100 Rh1BG028900 Rh1CG031400 Rh1DG038100
rosa_wichuraiana	Rw1G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	474
Acc36I	ACCTGC	2 cut(s)	42, 289
AccII	CGCG	1 cut(s)	548
AcoI	YGGCCR	7 cut(s)	39, 116, 151, 174, 208, 502, 552
AfaI	GTAC	4 cut(s)	92, 317, 365, 410
AfiI	CCNNNNNNNGG	1 cut(s)	529
AgsI	TTSAA	2 cut(s)	358, 454
AjiI	CACGTC	1 cut(s)	331
AjnI	CCWGG	1 cut(s)	113
AluBI	AGCT	1 cut(s)	268
AluI	AGCT	1 cut(s)	268
Alw26I	GTCTC	3 cut(s)	325, 365, 551
AspLEI	GCGC	4 cut(s)	278, 469, 475, 550
AspS9I	GGNCC	1 cut(s)	570
AsuC2I	CCSGG	1 cut(s)	71
AsuHPI	GGTGA	3 cut(s)	208, 434, 503
BalI	TGGCCA	3 cut(s)	41, 176, 504
BbsI	GAAGAC	2 cut(s)	147, 295
BccI	CCATC	3 cut(s)	175, 413, 513
BceAI	ACGGC	3 cut(s)	166, 212, 223
BciT130I	CCWGG	1 cut(s)	115
BcnI	CCSGG	1 cut(s)	71
BcoDI	GTCTC	3 cut(s)	325, 365, 551
BfoI	RGCGCY	1 cut(s)	279
BfuAI	ACCTGC	2 cut(s)	42, 289
BisI	GCNGC	6 cut(s)	119, 154, 279, 309, 351, 535
BlsI	GCNGC	6 cut(s)	120, 155, 280, 310, 352, 536
BmcAI	AGTACT	2 cut(s)	92, 410
Bme1390I	CCNGG	2 cut(s)	71, 115
BmgBI	CACGTC	1 cut(s)	331
BmgT120I	GGNCC	1 cut(s)	570
BmiI	GGNNCC	1 cut(s)	571
BmrFI	CCNGG	2 cut(s)	71, 115
BmsI	GCATC	2 cut(s)	165, 418
BpiI	GAAGAC	2 cut(s)	147, 295
BplI	GAGNNNNNCTC	2 cut(s)	305, 337
BpuMI	CCSGG	1 cut(s)	71
BsaJI	CCNNGG	4 cut(s)	205, 291, 573, 585
BsaXI	ACNNNNNCTCC	6 cut(s)	95, 125, 203, 233, 392, 422
Bsc4I	CCNNNNNNNGG	1 cut(s)	529
Bse118I	RCCGGY	1 cut(s)	550
BseBI	CCWGG	1 cut(s)	115
BseDI	CCNNGG	4 cut(s)	205, 291, 573, 585
BseGI	GGATG	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	529
BseRI	GAGGAG	2 cut(s)	200, 203
BseX3I	CGGCCG	2 cut(s)	151, 552
Bsh1236I	CGCG	1 cut(s)	548
Bsh1285I	CGRYCG	2 cut(s)	154, 555
BsiEI	CGRYCG	2 cut(s)	154, 555
BsiSI	CCGG	2 cut(s)	71, 551
BslI	CCNNNNNNNGG	1 cut(s)	529
BsmAI	GTCTC	3 cut(s)	325, 365, 551
BsmBI	CGTCTC	2 cut(s)	325, 551
BsmI	GAATGC	1 cut(s)	586
Bsp1407I	TGTACA	1 cut(s)	363
Bsp19I	CCATGG	1 cut(s)	291
BspFNI	CGCG	1 cut(s)	548
BspHI	TCATGA	2 cut(s)	270, 391
BspLI	GGNNCC	1 cut(s)	571
BspMI	ACCTGC	2 cut(s)	42, 289
BspQI	GCTCTTC	1 cut(s)	332
BsrFI	RCCGGY	1 cut(s)	550
BsrGI	TGTACA	1 cut(s)	363
BssAI	RCCGGY	1 cut(s)	550
BssECI	CCNNGG	4 cut(s)	205, 291, 573, 585
BssT1I	CCWWGG	3 cut(s)	291, 573, 585
Bst2UI	CCWGG	1 cut(s)	115
Bst4CI	ACNGT	1 cut(s)	347
Bst6I	CTCTTC	2 cut(s)	65, 332
BstAPI	GCANNNNNTGC	1 cut(s)	201
BstAUI	TGTACA	1 cut(s)	363
BstC8I	GCNNGC	6 cut(s)	39, 48, 52, 471, 477, 552
BstDEI	CTNAG	1 cut(s)	264
BstDSI	CCRYGG	2 cut(s)	205, 291
BstF5I	GGATG	1 cut(s)	105
BstFNI	CGCG	1 cut(s)	548
BstH2I	RGCGCY	1 cut(s)	279
BstHHI	GCGC	4 cut(s)	278, 469, 475, 550
BstMAI	GTCTC	3 cut(s)	325, 365, 551
BstMCI	CGRYCG	2 cut(s)	154, 555
BstMWI	GCNNNNNNNGC	9 cut(s)	43, 47, 124, 162, 201, 243, 252, 287, 481
BstNI	CCWGG	1 cut(s)	115
BstNSI	RCATGY	2 cut(s)	473, 479
BstSCI	CCNGG	2 cut(s)	69, 113
BstUI	CGCG	1 cut(s)	548
BstV2I	GAAGAC	2 cut(s)	147, 295
BstZI	CGGCCG	2 cut(s)	151, 552
BtgI	CCRYGG	2 cut(s)	205, 291
BtrI	CACGTC	1 cut(s)	331
BtsCI	GGATG	1 cut(s)	105
BveI	ACCTGC	2 cut(s)	42, 289
Cac8I	GCNNGC	6 cut(s)	39, 48, 52, 471, 477, 552
CciI	TCATGA	2 cut(s)	270, 391
CfoI	GCGC	4 cut(s)	278, 469, 475, 550
Cfr10I	RCCGGY	1 cut(s)	550
Cfr13I	GGNCC	1 cut(s)	570
Csp6I	GTAC	4 cut(s)	91, 316, 364, 409
CviQI	GTAC	4 cut(s)	91, 316, 364, 409
DdeI	CTNAG	1 cut(s)	264
EaeI	YGGCCR	7 cut(s)	39, 116, 151, 174, 208, 502, 552
EagI	CGGCCG	2 cut(s)	151, 552
Eam1104I	CTCTTC	2 cut(s)	65, 332
EarI	CTCTTC	2 cut(s)	65, 332
EclXI	CGGCCG	2 cut(s)	151, 552
Eco130I	CCWWGG	3 cut(s)	291, 573, 585
Eco52I	CGGCCG	2 cut(s)	151, 552
EcoRII	CCWGG	1 cut(s)	113
EcoT14I	CCWWGG	3 cut(s)	291, 573, 585
ErhI	CCWWGG	3 cut(s)	291, 573, 585
Esp3I	CGTCTC	2 cut(s)	325, 551
FauI	CCCGC	1 cut(s)	472
Fnu4HI	GCNGC	6 cut(s)	119, 154, 279, 309, 351, 535
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	6 cut(s)	119, 154, 279, 309, 351, 535
FspAI	RTGCGCAY	1 cut(s)	474
FspI	TGCGCA	1 cut(s)	474
GlaI	GCGC	4 cut(s)	277, 468, 474, 549
GluI	GCNGC	6 cut(s)	119, 154, 279, 309, 351, 535
HaeII	RGCGCY	1 cut(s)	279
HapII	CCGG	2 cut(s)	71, 551
HhaI	GCGC	4 cut(s)	278, 469, 475, 550
Hin6I	GCGC	4 cut(s)	276, 467, 473, 548
HinP1I	GCGC	4 cut(s)	276, 467, 473, 548
HinfI	GANTC	2 cut(s)	373, 388
HpaII	CCGG	2 cut(s)	71, 551
HphI	GGTGA	3 cut(s)	208, 434, 503
Hpy166II	GTNNAC	1 cut(s)	366
Hpy188III	TCNNGA	3 cut(s)	271, 334, 392
Hpy8I	GTNNAC	1 cut(s)	366
Hpy99I	CGWCG	2 cut(s)	137, 164
HpyAV	CCTTC	3 cut(s)	439, 448, 457
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4IV	ACGT	4 cut(s)	132, 168, 318, 330
HpyCH4V	TGCA	4 cut(s)	9, 46, 54, 494
HpyF10VI	GCNNNNNNNGC	9 cut(s)	43, 47, 124, 162, 201, 243, 252, 287, 481
HpyF3I	CTNAG	1 cut(s)	264
HpySE526I	ACGT	4 cut(s)	132, 168, 318, 330
HspAI	GCGC	4 cut(s)	276, 467, 473, 548
KroI	GCCGGC	1 cut(s)	550
KroNI	GCCGGC	1 cut(s)	552
LguI	GCTCTTC	1 cut(s)	332
LmnI	GCTCC	1 cut(s)	295
LweI	GCATC	2 cut(s)	165, 418
MaeII	ACGT	4 cut(s)	132, 168, 318, 330
MboII	GAAGA	6 cut(s)	52, 152, 295, 349, 437, 472
MlsI	TGGCCA	3 cut(s)	41, 176, 504
MluNI	TGGCCA	3 cut(s)	41, 176, 504
MlyI	GAGTC	1 cut(s)	367
Mox20I	TGGCCA	3 cut(s)	41, 176, 504
MroNI	GCCGGC	1 cut(s)	550
MscI	TGGCCA	3 cut(s)	41, 176, 504
MslI	CAYNNNNRTG	3 cut(s)	474, 489, 525
Msp20I	TGGCCA	3 cut(s)	41, 176, 504
MspI	CCGG	2 cut(s)	71, 551
MspR9I	CCNGG	2 cut(s)	71, 115
Mva1269I	GAATGC	1 cut(s)	586
MvaI	CCWGG	1 cut(s)	115
MvnI	CGCG	1 cut(s)	548
MwoI	GCNNNNNNNGC	9 cut(s)	43, 47, 124, 162, 201, 243, 252, 287, 481
NaeI	GCCGGC	1 cut(s)	552
NciI	CCSGG	1 cut(s)	71
NcoI	CCATGG	1 cut(s)	291
NgoMIV	GCCGGC	1 cut(s)	550
NlaIV	GGNNCC	1 cut(s)	571
NmeAIII	GCCGAG	3 cut(s)	231, 337, 580
NsbI	TGCGCA	1 cut(s)	474
NspI	RCATGY	2 cut(s)	473, 479
PaeI	GCATGC	2 cut(s)	473, 479
PagI	TCATGA	2 cut(s)	270, 391
PciSI	GCTCTTC	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	2 cut(s)	156, 165
PctI	GAATGC	1 cut(s)	586
PdiI	GCCGGC	1 cut(s)	552
PfeI	GAWTC	1 cut(s)	388
PfoI	TCCNGGA	1 cut(s)	69
PkrI	GCNGC	6 cut(s)	120, 155, 280, 310, 352, 536
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	113
PspN4I	GGNNCC	1 cut(s)	571
PspPI	GGNCC	1 cut(s)	570
RsaI	GTAC	4 cut(s)	92, 317, 365, 410
RsaNI	GTAC	4 cut(s)	91, 316, 364, 409
RseI	CAYNNNNRTG	3 cut(s)	474, 489, 525
SapI	GCTCTTC	1 cut(s)	332
SatI	GCNGC	6 cut(s)	119, 154, 279, 309, 351, 535
Sau96I	GGNCC	1 cut(s)	570
ScaI	AGTACT	2 cut(s)	92, 410
SchI	GAGTC	1 cut(s)	367
ScrFI	CCNGG	2 cut(s)	71, 115
SfaNI	GCATC	2 cut(s)	165, 418
SmiMI	CAYNNNNRTG	3 cut(s)	474, 489, 525
SphI	GCATGC	2 cut(s)	473, 479
StyD4I	CCNGG	2 cut(s)	69, 113
StyI	CCWWGG	3 cut(s)	291, 573, 585
TaaI	ACNGT	1 cut(s)	347
TaiI	ACGT	4 cut(s)	135, 171, 321, 333
TatI	WGTACW	3 cut(s)	90, 363, 408
TauI	GCSGC	6 cut(s)	121, 156, 281, 311, 353, 537
TfiI	GAWTC	1 cut(s)	388
TspDTI	ATGAA	2 cut(s)	101, 380
TspGWI	ACGGA	1 cut(s)	383
XceI	RCATGY	2 cut(s)	473, 479
ZrmI	AGTACT	2 cut(s)	92, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.