Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0011492

Physical Location & Seq

Genomic Coordinates Forward (+)

2172738 .. 2177546

Gene Structure 4809 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g01790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGTGTGCATACGCAAGGCCACAATGGACGATCTGCTGGCGATGCAAGCCTGCAACCTCTTCTGCCTCCCGGAGAACTACCAGATGAAGTACTACCTCTACCACATCCTCTCATGGCCGCAGTTGCTCTACGTCGCCGAAGACTACAACGGCCGCATCGTCGGCTACGTCCTGGCCAAGATGGAGGAAGAGAGCAACGAGTGCCACGGCCACATCACCTCCCTCGCCGTCCTCCGCACCCACCGCAAATTGGGCCTCGCCACCAAGCTCATGAGCGCCGCCCAGAACGCCATGGAGCAGGTCTTCGCCGCCGAGTACGTCTCCCTCCACGTCAGGAAGAGCAACCGCGCCGCCTTCAATCTGTACACCGAGACTTTGGGGTATAAGATTCATGACATTGAAGCCAAGTACTATGCCGACGGAGAAGATGCTTATGACATGAGGAAGGAGCTCAAGGGGAAGAAAGTGCATGCTCATTCGCACCATGGCCATCACCACCACCACCACCACCACCACGAGGGCGGGTGTTGCTCCGCTGAGGCCAAGCCGGCCGAGACCAAATCCAAGGCAGGGAGTGCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004596 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006950 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010035 GO:0010154 GO:0010467 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0017198 GO:0018002 GO:0018193 GO:0018200 GO:0018209 GO:0019538 GO:0022414 GO:0022626 GO:0030920 GO:0031248 GO:0031365 GO:0031414 GO:0031415 GO:0032501 GO:0032502 GO:0032991 GO:0034212 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051604 GO:0061458 GO:0071704 GO:1901564 GO:1901700 GO:1902493 GO:1902494 GO:1990189 GO:1990190 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

195

Amino Acids

22.11

Weight (kDa)

7.75

Isoelectric Point (pI)

37.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	21 - 128	6.1e-18	Acetyltransferase (GNAT) family
Acetyltransf_7	PF13508	42 - 129	9.3e-10	Acetyltransferase (GNAT) domain
Acetyltransf_10	PF13673	43 - 151	2e-10	Acetyltransferase (GNAT) domain
FR47	PF08445	69 - 131	4.5e-06	FR47-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13780
fragaria_vesca	FvH4_7g01790
malus_domestica	MD02G1300400.v1.1 MD07G1016300.v1.1 MD07G1016800.v1.1 MD07G1023300.v1.1
prunus_persica	Prupe.2G024200_v2.0.a1 Prupe.2G024200_v2.0.a1
pyrus_communis	pycom07g01770
rosa_chinensis	RchiOBHm_Chr1g0318401
rosa_laevigata	RLG00000030541
rosa_multiflora	Rmu_sc0002662.1_g000015 Rmu_sc0003936.1_g000038
rosa_roxburghii	Rroxscaffold_4G00329270
rosa_rugosa	Rorug01G0021000
rosa_samantha	Rh1AG033100 Rh1BG028900 Rh1CG031400 Rh1DG038100
rosa_wichuraiana	Rw1G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	289
AccII	CGCG	1 cut(s)	348
AcoI	YGGCCR	6 cut(s)	116, 151, 174, 208, 487, 549
AfaI	GTAC	4 cut(s)	92, 317, 365, 410
AfiI	CCNNNNNNNGG	3 cut(s)	250, 517, 570
AgsI	TTSAA	2 cut(s)	358, 401
AjiI	CACGTC	1 cut(s)	331
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	2 cut(s)	268, 451
AluI	AGCT	2 cut(s)	268, 451
Alw21I	GWGCWC	1 cut(s)	453
Alw26I	GTCTC	3 cut(s)	325, 365, 548
AoxI	GGCC	9 cut(s)	18, 116, 151, 174, 208, 253, 487, 540, 549
AspLEI	GCGC	2 cut(s)	278, 350
AspS9I	GGNCC	1 cut(s)	253
AsuC2I	CCSGG	1 cut(s)	71
AsuHPI	GGTGA	2 cut(s)	208, 485
BalI	TGGCCA	2 cut(s)	176, 489
BanII	GRGCYC	1 cut(s)	453
BauI	CACGAG	1 cut(s)	515
BbsI	GAAGAC	2 cut(s)	147, 295
Bbv12I	GWGCWC	1 cut(s)	453
BbvCI	CCTCAGC	1 cut(s)	537
BccI	CCATC	2 cut(s)	175, 498
BceAI	ACGGC	3 cut(s)	166, 212, 223
BciT130I	CCWGG	1 cut(s)	173
BcnI	CCSGG	1 cut(s)	71
BcoDI	GTCTC	3 cut(s)	325, 365, 548
BfoI	RGCGCY	1 cut(s)	279
BfuAI	ACCTGC	1 cut(s)	289
BglI	GCCNNNNNGGC	1 cut(s)	548
BisI	GCNGC	5 cut(s)	119, 154, 279, 309, 351
BlsI	GCNGC	5 cut(s)	120, 155, 280, 310, 352
BmcAI	AGTACT	2 cut(s)	92, 410
Bme1390I	CCNGG	2 cut(s)	71, 173
BmgBI	CACGTC	1 cut(s)	331
BmgT120I	GGNCC	1 cut(s)	253
BmrFI	CCNGG	2 cut(s)	71, 173
BmsI	GCATC	3 cut(s)	33, 165, 418
BpiI	GAAGAC	2 cut(s)	147, 295
BplI	GAGNNNNNCTC	2 cut(s)	305, 337
Bpu10I	CCTNAGC	1 cut(s)	537
BpuEI	CTTGAG	1 cut(s)	437
BpuMI	CCSGG	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	548
BsaJI	CCNNGG	4 cut(s)	205, 291, 484, 564
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	3 cut(s)	250, 517, 570
Bse118I	RCCGGY	1 cut(s)	547
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	4 cut(s)	205, 291, 484, 564
BseGI	GGATG	1 cut(s)	105
BseLI	CCNNNNNNNGG	3 cut(s)	250, 517, 570
BseMII	CTCAG	1 cut(s)	528
BseX3I	CGGCCG	2 cut(s)	151, 549
Bsh1236I	CGCG	1 cut(s)	348
Bsh1285I	CGRYCG	2 cut(s)	154, 552
BshFI	GGCC	9 cut(s)	20, 118, 153, 176, 210, 255, 489, 542, 551
BsiEI	CGRYCG	2 cut(s)	154, 552
BsiHKAI	GWGCWC	1 cut(s)	453
BsiSI	CCGG	2 cut(s)	71, 548
BslI	CCNNNNNNNGG	3 cut(s)	250, 517, 570
BsmAI	GTCTC	3 cut(s)	325, 365, 548
BsmBI	CGTCTC	1 cut(s)	325
BsnI	GGCC	9 cut(s)	20, 118, 153, 176, 210, 255, 489, 542, 551
Bso31I	GGTCTC	1 cut(s)	548
Bsp1286I	GDGCHC	1 cut(s)	453
Bsp1407I	TGTACA	1 cut(s)	363
Bsp143I	GATC	1 cut(s)	31
Bsp19I	CCATGG	2 cut(s)	291, 484
BspANI	GGCC	9 cut(s)	20, 118, 153, 176, 210, 255, 489, 542, 551
BspCNI	CTCAG	1 cut(s)	529
BspFNI	CGCG	1 cut(s)	348
BspHI	TCATGA	2 cut(s)	270, 391
BspMI	ACCTGC	1 cut(s)	289
BspQI	GCTCTTC	1 cut(s)	332
BspTNI	GGTCTC	1 cut(s)	548
BsrFI	RCCGGY	1 cut(s)	547
BsrGI	TGTACA	1 cut(s)	363
BssAI	RCCGGY	1 cut(s)	547
BssECI	CCNNGG	4 cut(s)	205, 291, 484, 564
BssMI	GATC	1 cut(s)	31
BssSI	CACGAG	1 cut(s)	515
BssT1I	CCWWGG	3 cut(s)	291, 484, 564
Bst2BI	CACGAG	1 cut(s)	515
Bst2UI	CCWGG	1 cut(s)	173
Bst6I	CTCTTC	3 cut(s)	65, 183, 332
BstAPI	GCANNNNNTGC	2 cut(s)	201, 575
BstAUI	TGTACA	1 cut(s)	363
BstC8I	GCNNGC	5 cut(s)	39, 48, 52, 471, 549
BstDEI	CTNAG	1 cut(s)	537
BstDSI	CCRYGG	3 cut(s)	205, 291, 484
BstF5I	GGATG	1 cut(s)	105
BstFNI	CGCG	1 cut(s)	348
BstH2I	RGCGCY	1 cut(s)	279
BstHHI	GCGC	2 cut(s)	278, 350
BstKTI	GATC	1 cut(s)	34
BstMAI	GTCTC	3 cut(s)	325, 365, 548
BstMBI	GATC	1 cut(s)	31
BstMCI	CGRYCG	2 cut(s)	154, 552
BstNI	CCWGG	1 cut(s)	173
BstNSI	RCATGY	1 cut(s)	473
BstSCI	CCNGG	2 cut(s)	69, 171
BstUI	CGCG	1 cut(s)	348
BstV2I	GAAGAC	2 cut(s)	147, 295
BstZI	CGGCCG	2 cut(s)	151, 549
BsuRI	GGCC	9 cut(s)	20, 118, 153, 176, 210, 255, 489, 542, 551
BtgI	CCRYGG	3 cut(s)	205, 291, 484
BtgZI	GCGATG	1 cut(s)	56
BtrI	CACGTC	1 cut(s)	331
BtsCI	GGATG	1 cut(s)	105
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	5 cut(s)	39, 48, 52, 471, 549
CciI	TCATGA	2 cut(s)	270, 391
CfoI	GCGC	2 cut(s)	278, 350
Cfr10I	RCCGGY	1 cut(s)	547
Cfr13I	GGNCC	1 cut(s)	253
Csp6I	GTAC	4 cut(s)	91, 316, 364, 409
CviAII	CATG	7 cut(s)	114, 271, 292, 392, 439, 470, 485
CviQI	GTAC	4 cut(s)	91, 316, 364, 409
DdeI	CTNAG	1 cut(s)	537
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
EaeI	YGGCCR	6 cut(s)	116, 151, 174, 208, 487, 549
EagI	CGGCCG	2 cut(s)	151, 549
Eam1104I	CTCTTC	3 cut(s)	65, 183, 332
EarI	CTCTTC	3 cut(s)	65, 183, 332
Ecl136II	GAGCTC	1 cut(s)	451
EclXI	CGGCCG	2 cut(s)	151, 549
Eco130I	CCWWGG	3 cut(s)	291, 484, 564
Eco24I	GRGCYC	1 cut(s)	453
Eco31I	GGTCTC	1 cut(s)	548
Eco52I	CGGCCG	2 cut(s)	151, 549
Eco53kI	GAGCTC	1 cut(s)	451
EcoICRI	GAGCTC	1 cut(s)	451
EcoRII	CCWGG	1 cut(s)	171
EcoT14I	CCWWGG	3 cut(s)	291, 484, 564
EcoT38I	GRGCYC	1 cut(s)	453
ErhI	CCWWGG	3 cut(s)	291, 484, 564
Esp3I	CGTCTC	1 cut(s)	325
FaeI	CATG	7 cut(s)	117, 274, 295, 395, 442, 473, 488
FatI	CATG	7 cut(s)	113, 270, 291, 391, 438, 469, 484
FauI	CCCGC	1 cut(s)	515
Fnu4HI	GCNGC	5 cut(s)	119, 154, 279, 309, 351
FokI	GGATG	1 cut(s)	92
FriOI	GRGCYC	1 cut(s)	453
Fsp4HI	GCNGC	5 cut(s)	119, 154, 279, 309, 351
GlaI	GCGC	2 cut(s)	277, 349
GluI	GCNGC	5 cut(s)	119, 154, 279, 309, 351
HaeII	RGCGCY	1 cut(s)	279
HaeIII	GGCC	9 cut(s)	20, 118, 153, 176, 210, 255, 489, 542, 551
HapII	CCGG	2 cut(s)	71, 548
HhaI	GCGC	2 cut(s)	278, 350
Hin1II	CATG	7 cut(s)	117, 274, 295, 395, 442, 473, 488
Hin6I	GCGC	2 cut(s)	276, 348
HinP1I	GCGC	2 cut(s)	276, 348
HinfI	GANTC	1 cut(s)	388
HpaII	CCGG	2 cut(s)	71, 548
HphI	GGTGA	2 cut(s)	208, 485
Hpy166II	GTNNAC	1 cut(s)	366
Hpy188III	TCNNGA	3 cut(s)	271, 334, 392
Hpy8I	GTNNAC	1 cut(s)	366
Hpy99I	CGWCG	3 cut(s)	137, 164, 422
HpyAV	CCTTC	2 cut(s)	364, 439
HpyCH4IV	ACGT	4 cut(s)	132, 168, 318, 330
HpyCH4V	TGCA	4 cut(s)	9, 46, 54, 469
HpyF3I	CTNAG	1 cut(s)	537
HpySE526I	ACGT	4 cut(s)	132, 168, 318, 330
Hsp92II	CATG	7 cut(s)	117, 274, 295, 395, 442, 473, 488
HspAI	GCGC	2 cut(s)	276, 348
KroI	GCCGGC	1 cut(s)	547
KroNI	GCCGGC	1 cut(s)	549
Kzo9I	GATC	1 cut(s)	31
LguI	GCTCTTC	1 cut(s)	332
LmnI	GCTCC	3 cut(s)	295, 448, 536
LweI	GCATC	3 cut(s)	33, 165, 418
MaeII	ACGT	4 cut(s)	132, 168, 318, 330
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	7 cut(s)	52, 152, 200, 295, 349, 437, 472
MhlI	GDGCHC	1 cut(s)	453
MlsI	TGGCCA	2 cut(s)	176, 489
MluCI	AATT	1 cut(s)	248
MluNI	TGGCCA	2 cut(s)	176, 489
Mox20I	TGGCCA	2 cut(s)	176, 489
MroNI	GCCGGC	1 cut(s)	547
MscI	TGGCCA	2 cut(s)	176, 489
Msp20I	TGGCCA	2 cut(s)	176, 489
MspA1I	CMGCKG	1 cut(s)	536
MspI	CCGG	2 cut(s)	71, 548
MspR9I	CCNGG	2 cut(s)	71, 173
MvaI	CCWGG	1 cut(s)	173
MvnI	CGCG	1 cut(s)	348
NaeI	GCCGGC	1 cut(s)	549
NciI	CCSGG	1 cut(s)	71
NcoI	CCATGG	2 cut(s)	291, 484
NdeII	GATC	1 cut(s)	31
NgoMIV	GCCGGC	1 cut(s)	547
NlaIII	CATG	7 cut(s)	117, 274, 295, 395, 442, 473, 488
NmeAIII	GCCGAG	2 cut(s)	337, 577
NspI	RCATGY	1 cut(s)	473
PaeI	GCATGC	1 cut(s)	473
PagI	TCATGA	2 cut(s)	270, 391
PciSI	GCTCTTC	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	2 cut(s)	156, 165
PdiI	GCCGGC	1 cut(s)	549
PfeI	GAWTC	1 cut(s)	388
PfoI	TCCNGGA	1 cut(s)	69
PkrI	GCNGC	5 cut(s)	120, 155, 280, 310, 352
Psp124BI	GAGCTC	1 cut(s)	453
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	253
RsaI	GTAC	4 cut(s)	92, 317, 365, 410
RsaNI	GTAC	4 cut(s)	91, 316, 364, 409
SacI	GAGCTC	1 cut(s)	453
SapI	GCTCTTC	1 cut(s)	332
SatI	GCNGC	5 cut(s)	119, 154, 279, 309, 351
Sau3AI	GATC	1 cut(s)	31
Sau96I	GGNCC	1 cut(s)	253
ScaI	AGTACT	2 cut(s)	92, 410
ScrFI	CCNGG	2 cut(s)	71, 173
SduI	GDGCHC	1 cut(s)	453
SfaNI	GCATC	3 cut(s)	33, 165, 418
SfiI	GGCCNNNNNGGCC	1 cut(s)	548
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
SphI	GCATGC	1 cut(s)	473
Sse9I	AATT	1 cut(s)	248
SstI	GAGCTC	1 cut(s)	453
StyD4I	CCNGG	2 cut(s)	69, 171
StyI	CCWWGG	3 cut(s)	291, 484, 564
TaiI	ACGT	4 cut(s)	135, 171, 321, 333
TasI	AATT	1 cut(s)	248
TatI	WGTACW	3 cut(s)	90, 363, 408
TauI	GCSGC	5 cut(s)	121, 156, 281, 311, 353
TfiI	GAWTC	1 cut(s)	388
TspDTI	ATGAA	2 cut(s)	101, 380
TspGWI	ACGGA	1 cut(s)	435
XceI	RCATGY	1 cut(s)	473
ZrmI	AGTACT	2 cut(s)	92, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.