AT5G14345

early nodulin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013295
Physical Location & Seq
Reverse (-)
4626175 .. 4626782
608 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G14345.1

Sequence Viewer

Length: 438 bp
ATGTTTCTTTGGCTTGTTATTGTCTTAACGATTTCAGCTTCTGTCTCTTCATATGAACACAAACTCAATTGGGTAGTTCCTCCTGCAAATTCTTCTGAGAGTTTCAATGATTGGGCTTCTAATAAACGGTTCCAAGTCGGAGACATCATTCAATTCAAGTACAAGAAAGACTCAGTGATGCAAGTGACGAAGGAGAGTTACAAGCAATGCAATTCGTCGCACCCGAGATTCTACTCGAATACGGGCAAAACCAGGTTCATGTTTGATCACTCTGTCCCTTACTATTTCATAAGCGGAACCTCTGGTCATTGCGAGAAAGGTCAGAAGATGATCGTCGAGGTCATATCTCGCGACCATACCACCACGTCTGCTGCTCCTCCAGCTGCCTTTGCTGTTTTGTTATGCTTCTTCAGCCTCTCTTTATATTTTGTAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

145

Amino Acids

16.5

Weight (kDa)

8.99

Isoelectric Point (pI)

31.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 31 - 108 4.6e-21 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013295)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14345
fragaria_vesca FvH4_6g52240
malus_domestica MD09G1019300.v1.1 MD17G1019900.v1.1
prunus_persica Prupe.3G297100_v2.0.a1 Prupe.3G297700_v2.0.a1
pyrus_communis pycom111g01600 pycom17g01650
rosa_chinensis RchiOBHm_Chr2g0173791
rosa_laevigata RLG00000022222
rosa_multiflora Rmu_sc0033569.1_g000002
rosa_roxburghii Rroxscaffold_2G00078620
rosa_rugosa Rorug02G0572800
rosa_samantha Rh2AG651800 Rh2BG662500 Rh2CG627200 Rh2DG677600
rosa_wichuraiana Rw2G053510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 351
AciI CCGC 1 cut(s) 294
AcsI RAATTY 1 cut(s) 88
AcuI CTGAAG 1 cut(s) 394
AfaI GTAC 1 cut(s) 161
AgsI TTSAA 3 cut(s) 106, 152, 157
AjiI CACGTC 1 cut(s) 366
AjnI CCWGG 1 cut(s) 251
AluBI AGCT 3 cut(s) 38, 383, 434
AluI AGCT 3 cut(s) 38, 383, 434
Alw26I GTCTC 2 cut(s) 49, 135
AlwNI CAGNNNCTG 1 cut(s) 41
Ama87I CYCGRG 1 cut(s) 223
ApeKI GCWGC 2 cut(s) 371, 383
ApoI RAATTY 1 cut(s) 88
AvaI CYCGRG 1 cut(s) 223
BarI GAAGNNNNNNTAC 2 cut(s) 182, 214
BbvI GCAGC 2 cut(s) 358, 370
BciT130I CCWGG 1 cut(s) 253
BclI TGATCA 1 cut(s) 265
BcoDI GTCTC 2 cut(s) 49, 135
BisI GCNGC 2 cut(s) 372, 384
BlsI GCNGC 2 cut(s) 373, 385
Bme1390I CCNGG 1 cut(s) 253
BmeT110I CYCGRG 1 cut(s) 223
BmgBI CACGTC 1 cut(s) 366
BmiI GGNNCC 2 cut(s) 131, 298
BmrFI CCNGG 1 cut(s) 253
BmsI GCATC 1 cut(s) 168
BpmI CTGGAG 1 cut(s) 363
Bse3DI GCAATG 2 cut(s) 212, 307
BseBI CCWGG 1 cut(s) 253
BseMI GCAATG 2 cut(s) 212, 307
BseMII CTCAG 2 cut(s) 87, 186
BseRI GAGGAG 1 cut(s) 366
BseXI GCAGC 2 cut(s) 358, 370
Bsh1236I CGCG 1 cut(s) 351
BsiHKCI CYCGRG 1 cut(s) 223
BslFI GGGAC 1 cut(s) 260
BsmAI GTCTC 2 cut(s) 49, 135
BsmFI GGGAC 1 cut(s) 260
BsoBI CYCGRG 1 cut(s) 223
Bsp143I GATC 2 cut(s) 265, 330
Bsp68I TCGCGA 1 cut(s) 351
BspACI CCGC 1 cut(s) 294
BspCNI CTCAG 2 cut(s) 88, 185
BspFNI CGCG 1 cut(s) 351
BspLI GGNNCC 2 cut(s) 131, 298
BsrDI GCAATG 2 cut(s) 212, 307
BssMI GATC 2 cut(s) 265, 330
Bst2UI CCWGG 1 cut(s) 253
Bst4CI ACNGT 1 cut(s) 129
Bst6I CTCTTC 1 cut(s) 52
BstDEI CTNAG 3 cut(s) 96, 172, 435
BstFNI CGCG 1 cut(s) 351
BstKTI GATC 2 cut(s) 268, 333
BstMAI GTCTC 2 cut(s) 49, 135
BstMBI GATC 2 cut(s) 265, 330
BstMWI GCNNNNNNNGC 3 cut(s) 380, 389, 411
BstNI CCWGG 1 cut(s) 253
BstSCI CCNGG 1 cut(s) 251
BstUI CGCG 1 cut(s) 351
BstV1I GCAGC 2 cut(s) 358, 370
BtrI CACGTC 1 cut(s) 366
BtsIMutI CAGTG 1 cut(s) 180
BtuMI TCGCGA 1 cut(s) 351
CaiI CAGNNNCTG 1 cut(s) 41
CsiI ACCWGGT 1 cut(s) 251
Csp6I GTAC 1 cut(s) 160
CviAII CATG 1 cut(s) 259
CviJI RGCY 6 cut(s) 13, 38, 116, 383, 414, 434
CviKI_1 RGCY 6 cut(s) 13, 38, 116, 383, 414, 434
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 3 cut(s) 96, 172, 435
DpnI GATC 2 cut(s) 267, 332
DpnII GATC 2 cut(s) 265, 330
Eam1104I CTCTTC 1 cut(s) 52
EarI CTCTTC 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 394
Eco88I CYCGRG 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 251
FaeI CATG 1 cut(s) 262
FaiI YATR 8 cut(s) 52, 54, 260, 290, 344, 357, 403, 424
FaqI GGGAC 1 cut(s) 260
FatI CATG 1 cut(s) 258
FauNDI CATATG 1 cut(s) 52
FbaI TGATCA 1 cut(s) 265
Fnu4HI GCNGC 2 cut(s) 372, 384
Fsp4HI GCNGC 2 cut(s) 372, 384
GluI GCNGC 2 cut(s) 372, 384
GsuI CTGGAG 1 cut(s) 363
Hin1II CATG 1 cut(s) 262
HinfI GANTC 2 cut(s) 170, 228
Hpy188I TCNGA 3 cut(s) 97, 140, 324
Hpy188III TCNNGA 1 cut(s) 350
Hpy99I CGWCG 2 cut(s) 220, 338
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 1 cut(s) 129
HpyCH4IV ACGT 1 cut(s) 365
HpyCH4V TGCA 3 cut(s) 86, 181, 210
HpyF10VI GCNNNNNNNGC 3 cut(s) 380, 389, 411
HpyF3I CTNAG 3 cut(s) 96, 172, 435
HpySE526I ACGT 1 cut(s) 365
Hsp92II CATG 1 cut(s) 262
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 2 cut(s) 265, 330
LmnI GCTCC 1 cut(s) 379
LpnPI CCDG 5 cut(s) 96, 238, 265, 288, 393
Lsp1109I GCAGC 2 cut(s) 358, 370
LweI GCATC 1 cut(s) 168
MabI ACCWGGT 1 cut(s) 251
MaeII ACGT 1 cut(s) 365
MaeIII GTNAC 2 cut(s) 184, 197
MalI GATC 2 cut(s) 267, 332
MboI GATC 2 cut(s) 265, 330
MboII GAAGA 4 cut(s) 39, 84, 337, 400
MfeI CAATTG 1 cut(s) 67
MluCI AATT 4 cut(s) 67, 88, 152, 211
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 118
MnlI CCTC 5 cut(s) 90, 310, 331, 387, 425
MseI TTAA 1 cut(s) 26
MspA1I CMGCKG 1 cut(s) 383
MspR9I CCNGG 1 cut(s) 253
MunI CAATTG 1 cut(s) 67
MvaI CCWGG 1 cut(s) 253
MvnI CGCG 1 cut(s) 351
MwoI GCNNNNNNNGC 3 cut(s) 380, 389, 411
NdeI CATATG 1 cut(s) 52
NdeII GATC 2 cut(s) 265, 330
NlaIII CATG 1 cut(s) 262
NlaIV GGNNCC 2 cut(s) 131, 298
NmuCI GTSAC 1 cut(s) 184
NruI TCGCGA 1 cut(s) 351
PcsI WCGNNNNNNNCGW 1 cut(s) 221
PfeI GAWTC 1 cut(s) 228
PkrI GCNGC 2 cut(s) 373, 385
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
Psp6I CCWGG 1 cut(s) 251
PspGI CCWGG 1 cut(s) 251
PspN4I GGNNCC 2 cut(s) 131, 298
PstNI CAGNNNCTG 1 cut(s) 41
PvuII CAGCTG 1 cut(s) 383
RruI TCGCGA 1 cut(s) 351
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 2 cut(s) 372, 384
Sau3AI GATC 2 cut(s) 265, 330
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 1 cut(s) 253
SetI ASST 8 cut(s) 40, 257, 302, 322, 342, 368, 385, 436
SexAI ACCWGGT 1 cut(s) 251
SfaNI GCATC 1 cut(s) 168
Sse9I AATT 4 cut(s) 67, 88, 152, 211
SsiI CCGC 1 cut(s) 294
StyD4I CCNGG 1 cut(s) 251
TaaI ACNGT 1 cut(s) 129
TaiI ACGT 1 cut(s) 368
TaqI TCGA 2 cut(s) 236, 336
TasI AATT 4 cut(s) 67, 88, 152, 211
TatI WGTACW 1 cut(s) 159
TfiI GAWTC 1 cut(s) 228
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TscAI CASTG 1 cut(s) 180
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 2 cut(s) 371, 383
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 4 cut(s) 39, 69, 247, 277
TspRI CASTG 1 cut(s) 180
XapI RAATTY 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.