FvH4_6g52240

Early nodulin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013295
Physical Location & Seq
Forward (+)
38544341 .. 38545253
913 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g52240.t1

Sequence Viewer

Length: 510 bp
ATGGCTGCTTTGAAAACAAGTTTGTTCTGCCTCGTCATTTTCATCTCTCTTGGCAACTCCTTGGTTTTCTCAGCTTATGAGTTCCAAGTTGGTGGAATTCAAGGTTGGGTCGTCCCTCCAACCAATGACAGCAAGGTCTACAACGACTGGGCCTCTGAAAACAGGTTCCAAGTCGGTAACGTCATACGGTTCAAGTACAAGAAGGACTCGGTGATGGAGGTGCCGGAAGAGGACTACAAGAAGTGCAACTCAAGTCATCCTAAGTTCTTTGACAATAGTGGAAACTCTGTCTATAGGTTTGACCATTCGGGGTCGTTTTACTTCATCAGTGGAGCAGCCGGACACTGCGAAAAGGGGCAGAGGATGATCGTTAAGGTCATGGCGTCCGATGAGGAGTCCCGGTTGGGTGGAAAATCTGCTGGTTATCCTGCTGCGGTTTCCGAGCTTGGTGTGTCCAAACTTGTGTTTGTTCAGTTTGTTTTGTTCTATGTTGCTTCTGTTGTGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

170

Amino Acids

18.78

Weight (kDa)

7.69

Isoelectric Point (pI)

24.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 44 - 120 3.7e-18 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013295)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14345
fragaria_vesca FvH4_6g52240
malus_domestica MD09G1019300.v1.1 MD17G1019900.v1.1
prunus_persica Prupe.3G297100_v2.0.a1 Prupe.3G297700_v2.0.a1
pyrus_communis pycom111g01600 pycom17g01650
rosa_chinensis RchiOBHm_Chr2g0173791
rosa_laevigata RLG00000022222
rosa_multiflora Rmu_sc0033569.1_g000002
rosa_roxburghii Rroxscaffold_2G00078620
rosa_rugosa Rorug02G0572800
rosa_samantha Rh2AG651800 Rh2BG662500 Rh2CG627200 Rh2DG677600
rosa_wichuraiana Rw2G053510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 134
AccB1I GGYRCC 1 cut(s) 220
AccI GTMKAC 1 cut(s) 138
AciI CCGC 1 cut(s) 434
AcsI RAATTY 1 cut(s) 96
AcyI GRCGYC 1 cut(s) 383
AfaI GTAC 1 cut(s) 197
AgsI TTSAA 3 cut(s) 13, 101, 193
AjuI GAANNNNNNNTTGG 2 cut(s) 88, 120
AluBI AGCT 2 cut(s) 74, 445
AluI AGCT 2 cut(s) 74, 445
AoxI GGCC 1 cut(s) 150
ApeKI GCWGC 3 cut(s) 5, 335, 431
ApoI RAATTY 1 cut(s) 96
AspS9I GGNCC 1 cut(s) 150
AsuC2I CCSGG 1 cut(s) 400
AsuHPI GGTGA 1 cut(s) 223
BanI GGYRCC 1 cut(s) 220
BbvI GCAGC 2 cut(s) 347, 418
BccI CCATC 1 cut(s) 208
BcnI CCSGG 1 cut(s) 400
BfaI CTAG 1 cut(s) 508
BfmI CTRYAG 1 cut(s) 292
BisI GCNGC 3 cut(s) 6, 336, 432
BlsI GCNGC 3 cut(s) 7, 337, 433
Bme1390I CCNGG 1 cut(s) 400
BmgT120I GGNCC 1 cut(s) 150
BmiI GGNNCC 2 cut(s) 167, 222
BmrFI CCNGG 1 cut(s) 400
BmrI ACTGGG 1 cut(s) 157
BmuI ACTGGG 1 cut(s) 157
BpuEI CTTGAG 1 cut(s) 235
BpuMI CCSGG 1 cut(s) 400
BsaHI GRCGYC 1 cut(s) 383
BsaJI CCNNGG 1 cut(s) 60
BsaXI ACNNNNNCTCC 2 cut(s) 386, 416
Bse1I ACTGG 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 2 cut(s) 256, 369
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 152
BseRI GAGGAG 1 cut(s) 407
BseXI GCAGC 2 cut(s) 347, 418
BshFI GGCC 1 cut(s) 152
BshNI GGYRCC 1 cut(s) 220
BsiSI CCGG 3 cut(s) 224, 339, 400
BslFI GGGAC 2 cut(s) 98, 382
BsmFI GGGAC 2 cut(s) 98, 382
BsnI GGCC 1 cut(s) 152
Bsp143I GATC 1 cut(s) 366
BspACI CCGC 1 cut(s) 434
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 1 cut(s) 83
BspLI GGNNCC 2 cut(s) 167, 222
BspT107I GGYRCC 1 cut(s) 220
BsrI ACTGG 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 1 cut(s) 366
BssNI GRCGYC 1 cut(s) 383
BssT1I CCWWGG 1 cut(s) 60
Bst4CI ACNGT 1 cut(s) 189
Bst6I CTCTTC 1 cut(s) 222
BstACI GRCGYC 1 cut(s) 383
BstDEI CTNAG 2 cut(s) 70, 261
BstF5I GGATG 2 cut(s) 256, 369
BstKTI GATC 1 cut(s) 369
BstMBI GATC 1 cut(s) 366
BstSCI CCNGG 1 cut(s) 398
BstSFI CTRYAG 1 cut(s) 292
BstV1I GCAGC 2 cut(s) 347, 418
BstXI CCANNNNNNTGG 1 cut(s) 92
BsuRI GGCC 1 cut(s) 152
BtsCI GGATG 2 cut(s) 256, 369
BtsI GCAGTG 1 cut(s) 343
BtsIMutI CAGTG 2 cut(s) 334, 343
Cfr13I GGNCC 1 cut(s) 150
CseI GACGC 1 cut(s) 372
Csp6I GTAC 1 cut(s) 196
CviAII CATG 1 cut(s) 379
CviJI RGCY 5 cut(s) 5, 74, 152, 338, 445
CviKI_1 RGCY 5 cut(s) 5, 74, 152, 338, 445
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 2 cut(s) 70, 261
DpnI GATC 1 cut(s) 368
DpnII GATC 1 cut(s) 366
DrdI GACNNNNNNGTC 1 cut(s) 134
DseDI GACNNNNNNGTC 1 cut(s) 134
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Eco130I CCWWGG 1 cut(s) 60
EcoRI GAATTC 1 cut(s) 96
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 1 cut(s) 382
FaiI YATR 5 cut(s) 78, 185, 294, 380, 489
FaqI GGGAC 2 cut(s) 98, 382
FatI CATG 1 cut(s) 378
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 3 cut(s) 6, 336, 432
FokI GGATG 2 cut(s) 243, 376
Fsp4HI GCNGC 3 cut(s) 6, 336, 432
FspBI CTAG 1 cut(s) 508
GluI GCNGC 3 cut(s) 6, 336, 432
HaeIII GGCC 1 cut(s) 152
HapII CCGG 3 cut(s) 224, 339, 400
HgaI GACGC 1 cut(s) 372
Hin1I GRCGYC 1 cut(s) 383
Hin1II CATG 1 cut(s) 382
HinfI GANTC 2 cut(s) 206, 395
HpaII CCGG 3 cut(s) 224, 339, 400
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 3 cut(s) 157, 388, 442
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 189
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 1 cut(s) 246
HpyF3I CTNAG 2 cut(s) 70, 261
HpySE526I ACGT 1 cut(s) 180
Hsp92I GRCGYC 1 cut(s) 383
Hsp92II CATG 1 cut(s) 382
Kzo9I GATC 1 cut(s) 366
LmnI GCTCC 1 cut(s) 332
LpnPI CCDG 7 cut(s) 133, 148, 237, 352, 405, 413, 441
Lsp1109I GCAGC 2 cut(s) 347, 418
MaeI CTAG 1 cut(s) 508
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 1 cut(s) 176
MalI GATC 1 cut(s) 368
MboI GATC 1 cut(s) 366
MboII GAAGA 1 cut(s) 239
MluCI AATT 1 cut(s) 96
MlyI GAGTC 2 cut(s) 200, 404
MmeI TCCRAC 1 cut(s) 143
MnlI CCTC 7 cut(s) 41, 126, 163, 211, 223, 354, 385
MseI TTAA 1 cut(s) 372
MspI CCGG 3 cut(s) 224, 339, 400
MspR9I CCNGG 1 cut(s) 400
NciI CCSGG 1 cut(s) 400
NdeII GATC 1 cut(s) 366
NlaIII CATG 1 cut(s) 382
NlaIV GGNNCC 2 cut(s) 167, 222
PkrI GCNGC 3 cut(s) 7, 337, 433
PleI GAGTC 2 cut(s) 200, 403
PpsI GAGTC 2 cut(s) 200, 403
PspN4I GGNNCC 2 cut(s) 167, 222
PspPI GGNCC 1 cut(s) 150
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 3 cut(s) 6, 336, 432
Sau3AI GATC 1 cut(s) 366
Sau96I GGNCC 1 cut(s) 150
SchI GAGTC 2 cut(s) 200, 404
ScrFI CCNGG 1 cut(s) 400
SetI ASST 9 cut(s) 76, 106, 138, 167, 183, 222, 299, 378, 447
SfcI CTRYAG 1 cut(s) 292
SmlI CTYRAG 1 cut(s) 250
SmoI CTYRAG 1 cut(s) 250
Sse9I AATT 1 cut(s) 96
SsiI CCGC 1 cut(s) 434
SspMI CTAG 1 cut(s) 508
StyD4I CCNGG 1 cut(s) 398
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 1 cut(s) 189
TaiI ACGT 1 cut(s) 183
TasI AATT 1 cut(s) 96
TatI WGTACW 1 cut(s) 195
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TscAI CASTG 2 cut(s) 334, 350
TseI GCWGC 3 cut(s) 5, 335, 431
TspDTI ATGAA 2 cut(s) 31, 313
TspRI CASTG 2 cut(s) 334, 350
XapI RAATTY 1 cut(s) 96
XmiI GTMKAC 1 cut(s) 138
XspI CTAG 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.