Rh2DG677600

Early nodulin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0013295
Physical Location & Seq
Forward (+)
89837772 .. 89838571
800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG677600.1

Sequence Viewer

Length: 702 bp
ATGGGTCACGTCGCCTCCCGAGTCCCCACTATCTCAGTTAGTGTAAGTAACTACCTCTTCCACAACTTCAACCCCTCTCTATATATTAACCCTCGTAAACACTCCCATAATTACATTTCACCTAGTCTTCTTCTAGCTTTGCATCATTCTGAGATTGAGAGAGAGCTAACTCTGAGACTGAGAGACCCTCCTATGGCTGCTTTTAAAACAAGTTTGTTCTGGCTCGTCATTTTCATCTCTCTTGGGAACTCGTTGGTTTTCTCAGCTTTTGAGTTCCAGGTTGGTGGAACTCAAGGTTGGGTCGTCCCTCCAACCAATGACAGCAAGGTCTACAACGACTGGGCTTCAGAAAACAGGTTCCAAATCGGCAACGCCATCCGTTTTAAGTACAAGAAGGACTCGGTGATGGAGGTGACGGAAGAGGACTACAAGAAGTGCAATTCAAGTCATCCCAACTTCTTCTCCAACAATGGAAACACTGTCTACAGGTTTGACCATTCGGGGTCGTTTTACTTCATCAGTGGGGCAGCCGGACACTGCGAAAAGGGGCAGAGGATGATCGTTAAGGTCATGTCGACCGATGAGGAGTCTCCGTTGGGCAAGAAATCTGCTGGCTATCGTGCTGCGGTTTACGAGCTTGGAGTGTCCAAACTTGTGTTTGTTCAGTTTGTTTTGTTCTGTGTTGCTTCTTTAGTGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

233

Amino Acids

26.34

Weight (kDa)

8.9

Isoelectric Point (pI)

25.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 108 - 184 5.2e-19 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013295)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14345
fragaria_vesca FvH4_6g52240
malus_domestica MD09G1019300.v1.1 MD17G1019900.v1.1
prunus_persica Prupe.3G297100_v2.0.a1 Prupe.3G297700_v2.0.a1
pyrus_communis pycom111g01600 pycom17g01650
rosa_chinensis RchiOBHm_Chr2g0173791
rosa_laevigata RLG00000022222
rosa_multiflora Rmu_sc0033569.1_g000002
rosa_roxburghii Rroxscaffold_2G00078620
rosa_rugosa Rorug02G0572800
rosa_samantha Rh2AG651800 Rh2BG662500 Rh2CG627200 Rh2DG677600
rosa_wichuraiana Rw2G053510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 326
AccI GTMKAC 3 cut(s) 330, 483, 575
AciI CCGC 1 cut(s) 626
AcuI CTGAAG 1 cut(s) 330
AfaI GTAC 1 cut(s) 389
AfiI CCNNNNNNNGG 1 cut(s) 193
AgsI TTSAA 2 cut(s) 70, 444
AjiI CACGTC 1 cut(s) 10
AjnI CCWGG 1 cut(s) 276
AjuI GAANNNNNNNTTGG 2 cut(s) 280, 312
AluBI AGCT 4 cut(s) 137, 166, 266, 637
AluI AGCT 4 cut(s) 137, 166, 266, 637
Alw26I GTCTC 3 cut(s) 169, 177, 594
Ama87I CYCGRG 1 cut(s) 18
ApeKI GCWGC 3 cut(s) 197, 527, 623
AsuHPI GGTGA 3 cut(s) 111, 415, 424
AvaI CYCGRG 1 cut(s) 18
BbsI GAAGAC 1 cut(s) 119
BbvI GCAGC 3 cut(s) 184, 539, 610
BccI CCATC 2 cut(s) 383, 400
BciT130I CCWGG 1 cut(s) 278
BcoDI GTCTC 3 cut(s) 169, 177, 594
BfaI CTAG 3 cut(s) 123, 134, 700
BfmI CTRYAG 1 cut(s) 484
BisI GCNGC 3 cut(s) 198, 528, 624
BlsI GCNGC 3 cut(s) 199, 529, 625
Bme1390I CCNGG 1 cut(s) 278
BmeT110I CYCGRG 1 cut(s) 18
BmgBI CACGTC 1 cut(s) 10
BmiI GGNNCC 1 cut(s) 359
BmrFI CCNGG 1 cut(s) 278
BmrI ACTGGG 1 cut(s) 349
BmsI GCATC 1 cut(s) 151
BmuI ACTGGG 1 cut(s) 349
BpiI GAAGAC 1 cut(s) 119
BplI GAGNNNNNCTC 2 cut(s) 172, 204
BpuEI CTTGAG 1 cut(s) 276
BsaI GGTCTC 1 cut(s) 177
BsaXI ACNNNNNCTCC 5 cut(s) 29, 446, 476, 578, 608
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse1I ACTGG 1 cut(s) 344
BseBI CCWGG 1 cut(s) 278
BseGI GGATG 3 cut(s) 375, 448, 561
BseLI CCNNNNNNNGG 1 cut(s) 193
BseMII CTCAG 5 cut(s) 48, 141, 164, 170, 276
BseNI ACTGG 1 cut(s) 344
BseRI GAGGAG 1 cut(s) 599
BseXI GCAGC 3 cut(s) 184, 539, 610
Bsh1285I CGRYCG 1 cut(s) 579
BsiEI CGRYCG 1 cut(s) 579
BsiHKCI CYCGRG 1 cut(s) 18
BsiSI CCGG 1 cut(s) 531
BslFI GGGAC 2 cut(s) 8, 290
BslI CCNNNNNNNGG 1 cut(s) 193
BsmAI GTCTC 3 cut(s) 169, 177, 594
BsmFI GGGAC 2 cut(s) 8, 290
Bso31I GGTCTC 1 cut(s) 177
BsoBI CYCGRG 1 cut(s) 18
Bsp143I GATC 1 cut(s) 558
BspACI CCGC 1 cut(s) 626
BspCNI CTCAG 5 cut(s) 47, 142, 165, 171, 275
BspLI GGNNCC 1 cut(s) 359
BspTNI GGTCTC 1 cut(s) 177
BsrI ACTGG 1 cut(s) 344
BssMI GATC 1 cut(s) 558
Bst2UI CCWGG 1 cut(s) 278
Bst4CI ACNGT 1 cut(s) 481
Bst6I CTCTTC 2 cut(s) 62, 414
BstC8I GCNNGC 1 cut(s) 613
BstDEI CTNAG 5 cut(s) 34, 150, 173, 179, 262
BstF5I GGATG 3 cut(s) 375, 448, 561
BstKTI GATC 1 cut(s) 561
BstMAI GTCTC 3 cut(s) 169, 177, 594
BstMBI GATC 1 cut(s) 558
BstMCI CGRYCG 1 cut(s) 579
BstNI CCWGG 1 cut(s) 278
BstSCI CCNGG 1 cut(s) 276
BstSFI CTRYAG 1 cut(s) 484
BstV1I GCAGC 3 cut(s) 184, 539, 610
BstV2I GAAGAC 1 cut(s) 119
BstXI CCANNNNNNTGG 1 cut(s) 284
BtrI CACGTC 1 cut(s) 10
BtsCI GGATG 3 cut(s) 375, 448, 561
BtsI GCAGTG 1 cut(s) 535
BtsIMutI CAGTG 3 cut(s) 477, 526, 535
Cac8I GCNNGC 1 cut(s) 613
Csp6I GTAC 1 cut(s) 388
CviAII CATG 1 cut(s) 571
CviJI RGCY 9 cut(s) 137, 166, 197, 223, 266, 344, 530, 615, 637
CviKI_1 RGCY 9 cut(s) 137, 166, 197, 223, 266, 344, 530, 615, 637
CviQI GTAC 1 cut(s) 388
DdeI CTNAG 5 cut(s) 34, 150, 173, 179, 262
DpnI GATC 1 cut(s) 560
DpnII GATC 1 cut(s) 558
DraI TTTAAA 1 cut(s) 205
DrdI GACNNNNNNGTC 1 cut(s) 326
DseDI GACNNNNNNGTC 1 cut(s) 326
Eam1104I CTCTTC 2 cut(s) 62, 414
EarI CTCTTC 2 cut(s) 62, 414
Eco31I GGTCTC 1 cut(s) 177
Eco57I CTGAAG 1 cut(s) 330
Eco88I CYCGRG 1 cut(s) 18
EcoRII CCWGG 1 cut(s) 276
FaeI CATG 1 cut(s) 574
FaiI YATR 5 cut(s) 82, 84, 108, 194, 572
FaqI GGGAC 2 cut(s) 8, 290
FatI CATG 1 cut(s) 570
FblI GTMKAC 3 cut(s) 330, 483, 575
Fnu4HI GCNGC 3 cut(s) 198, 528, 624
FokI GGATG 3 cut(s) 362, 435, 568
Fsp4HI GCNGC 3 cut(s) 198, 528, 624
FspBI CTAG 3 cut(s) 123, 134, 700
GluI GCNGC 3 cut(s) 198, 528, 624
HapII CCGG 1 cut(s) 531
Hin1II CATG 1 cut(s) 574
HincII GTYRAC 1 cut(s) 576
HindII GTYRAC 1 cut(s) 576
HinfI GANTC 3 cut(s) 21, 398, 587
HpaII CCGG 1 cut(s) 531
HphI GGTGA 3 cut(s) 111, 415, 424
Hpy166II GTNNAC 5 cut(s) 98, 331, 484, 576, 631
Hpy188I TCNGA 3 cut(s) 151, 174, 349
Hpy188III TCNNGA 1 cut(s) 18
Hpy8I GTNNAC 5 cut(s) 98, 331, 484, 576, 631
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 1 cut(s) 388
HpyCH4III ACNGT 1 cut(s) 481
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 2 cut(s) 142, 438
HpyF3I CTNAG 5 cut(s) 34, 150, 173, 179, 262
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 1 cut(s) 574
Kzo9I GATC 1 cut(s) 558
LpnPI CCDG 8 cut(s) 205, 263, 290, 325, 340, 472, 544, 597
Lsp1109I GCAGC 3 cut(s) 184, 539, 610
LweI GCATC 1 cut(s) 151
MaeI CTAG 3 cut(s) 123, 134, 700
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 3 cut(s) 5, 47, 412
MalI GATC 1 cut(s) 560
MboI GATC 1 cut(s) 558
MboII GAAGA 5 cut(s) 49, 119, 122, 431, 451
MluCI AATT 2 cut(s) 109, 439
MlyI GAGTC 3 cut(s) 30, 392, 596
MmeI TCCRAC 2 cut(s) 335, 489
MseI TTAA 4 cut(s) 87, 204, 384, 564
MspI CCGG 1 cut(s) 531
MspR9I CCNGG 1 cut(s) 278
MvaI CCWGG 1 cut(s) 278
NdeII GATC 1 cut(s) 558
NlaIII CATG 1 cut(s) 574
NlaIV GGNNCC 1 cut(s) 359
NmuCI GTSAC 2 cut(s) 5, 412
PkrI GCNGC 3 cut(s) 199, 529, 625
PleI GAGTC 3 cut(s) 29, 392, 595
PpsI GAGTC 3 cut(s) 29, 392, 595
Psp6I CCWGG 1 cut(s) 276
PspGI CCWGG 1 cut(s) 276
PspN4I GGNNCC 1 cut(s) 359
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
SalI GTCGAC 1 cut(s) 574
SaqAI TTAA 4 cut(s) 87, 204, 384, 564
SatI GCNGC 3 cut(s) 198, 528, 624
Sau3AI GATC 1 cut(s) 558
SchI GAGTC 3 cut(s) 30, 392, 596
ScrFI CCNGG 1 cut(s) 278
SfaNI GCATC 1 cut(s) 151
SfcI CTRYAG 1 cut(s) 484
SmlI CTYRAG 1 cut(s) 291
SmoI CTYRAG 1 cut(s) 291
Sse9I AATT 2 cut(s) 109, 439
SsiI CCGC 1 cut(s) 626
SspMI CTAG 3 cut(s) 123, 134, 700
StyD4I CCNGG 1 cut(s) 276
TaaI ACNGT 1 cut(s) 481
TaiI ACGT 1 cut(s) 12
TaqI TCGA 1 cut(s) 575
TaqII GACCGA 1 cut(s) 593
TasI AATT 2 cut(s) 109, 439
TatI WGTACW 1 cut(s) 387
Tru1I TTAA 4 cut(s) 87, 204, 384, 564
Tru9I TTAA 4 cut(s) 87, 204, 384, 564
TscAI CASTG 3 cut(s) 484, 526, 542
TseFI GTSAC 2 cut(s) 5, 412
TseI GCWGC 3 cut(s) 197, 527, 623
Tsp45I GTSAC 2 cut(s) 5, 412
TspDTI ATGAA 2 cut(s) 223, 505
TspGWI ACGGA 3 cut(s) 368, 431, 582
TspRI CASTG 3 cut(s) 484, 526, 542
XmiI GTMKAC 3 cut(s) 330, 483, 575
XspI CTAG 3 cut(s) 123, 134, 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.