Rmu_sc0033569.1_g000002

Early nodulin-like protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0033569.1
Physical Location & Seq
Reverse (-)
1266 .. 1749
484 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0033569.1_g000002.1.cds

Sequence Viewer

Length: 378 bp
atgacagcaaggtctacaacgactgggcttcagaaaacaggttccaaatcggcaacgccatcctacaagaaggactcggtgatggaggtgacggaagaggactacaagaagtgcaattcaagtcatcccaacttcttctccaacaatggaaacactgtctacaggtttgaccattcggggtcgttttacttcatcagtggggcagccggacactgcgaaaaggggcagaggatgatcgttaaggtcatgtcgaccgatgaggagtctccgttgggcaagaaatcggctggctatcgtgctgcggtttacgagcttggagtgtccaaacttgtgtttgttcagtttgttttgttctatgttgcttctttagtgttctag
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

125

Amino Acids

13.81

Weight (kDa)

9.08

Isoelectric Point (pI)

27.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013295)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 10
AccI GTMKAC 3 cut(s) 14, 159, 251
AciI CCGC 1 cut(s) 302
AcuI CTGAAG 1 cut(s) 14
AgsI TTSAA 1 cut(s) 120
AluBI AGCT 1 cut(s) 313
AluI AGCT 1 cut(s) 313
Alw26I GTCTC 1 cut(s) 270
ApeKI GCWGC 2 cut(s) 203, 299
AsuHPI GGTGA 2 cut(s) 91, 100
BbvI GCAGC 2 cut(s) 215, 286
BccI CCATC 2 cut(s) 67, 76
BcoDI GTCTC 1 cut(s) 270
BfaI CTAG 1 cut(s) 376
BfmI CTRYAG 1 cut(s) 160
BisI GCNGC 2 cut(s) 204, 300
BlsI GCNGC 2 cut(s) 205, 301
BmiI GGNNCC 1 cut(s) 43
BmrI ACTGGG 1 cut(s) 33
BmuI ACTGGG 1 cut(s) 33
BsaXI ACNNNNNCTCC 4 cut(s) 122, 152, 254, 284
Bse1I ACTGG 1 cut(s) 28
BseGI GGATG 3 cut(s) 59, 124, 237
BseNI ACTGG 1 cut(s) 28
BseRI GAGGAG 1 cut(s) 275
BseXI GCAGC 2 cut(s) 215, 286
Bsh1285I CGRYCG 1 cut(s) 255
BsiEI CGRYCG 1 cut(s) 255
BsiSI CCGG 1 cut(s) 207
BsmAI GTCTC 1 cut(s) 270
Bsp143I GATC 1 cut(s) 234
BspACI CCGC 1 cut(s) 302
BspLI GGNNCC 1 cut(s) 43
BsrI ACTGG 1 cut(s) 28
BssMI GATC 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 157
Bst6I CTCTTC 1 cut(s) 90
BstC8I GCNNGC 1 cut(s) 289
BstF5I GGATG 3 cut(s) 59, 124, 237
BstKTI GATC 1 cut(s) 237
BstMAI GTCTC 1 cut(s) 270
BstMBI GATC 1 cut(s) 234
BstMCI CGRYCG 1 cut(s) 255
BstSFI CTRYAG 1 cut(s) 160
BstV1I GCAGC 2 cut(s) 215, 286
BtsCI GGATG 3 cut(s) 59, 124, 237
BtsI GCAGTG 1 cut(s) 211
BtsIMutI CAGTG 3 cut(s) 153, 202, 211
Cac8I GCNNGC 1 cut(s) 289
CviAII CATG 1 cut(s) 247
CviJI RGCY 5 cut(s) 28, 206, 287, 291, 313
CviKI_1 RGCY 5 cut(s) 28, 206, 287, 291, 313
DpnI GATC 1 cut(s) 236
DpnII GATC 1 cut(s) 234
DrdI GACNNNNNNGTC 1 cut(s) 10
DseDI GACNNNNNNGTC 1 cut(s) 10
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Eco57I CTGAAG 1 cut(s) 14
FaeI CATG 1 cut(s) 250
FaiI YATR 2 cut(s) 248, 357
FatI CATG 1 cut(s) 246
FblI GTMKAC 3 cut(s) 14, 159, 251
Fnu4HI GCNGC 2 cut(s) 204, 300
FokI GGATG 3 cut(s) 46, 111, 244
Fsp4HI GCNGC 2 cut(s) 204, 300
FspBI CTAG 1 cut(s) 376
GluI GCNGC 2 cut(s) 204, 300
HapII CCGG 1 cut(s) 207
Hin1II CATG 1 cut(s) 250
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HinfI GANTC 2 cut(s) 74, 263
HpaII CCGG 1 cut(s) 207
HphI GGTGA 2 cut(s) 91, 100
Hpy166II GTNNAC 4 cut(s) 15, 160, 252, 307
Hpy188I TCNGA 1 cut(s) 33
Hpy8I GTNNAC 4 cut(s) 15, 160, 252, 307
HpyAV CCTTC 1 cut(s) 64
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4V TGCA 1 cut(s) 114
Hsp92II CATG 1 cut(s) 250
Kzo9I GATC 1 cut(s) 234
LpnPI CCDG 5 cut(s) 9, 24, 148, 220, 273
Lsp1109I GCAGC 2 cut(s) 215, 286
MaeI CTAG 1 cut(s) 376
MaeIII GTNAC 1 cut(s) 88
MalI GATC 1 cut(s) 236
MboI GATC 1 cut(s) 234
MboII GAAGA 2 cut(s) 107, 127
MluCI AATT 1 cut(s) 115
MlyI GAGTC 2 cut(s) 68, 272
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 4 cut(s) 79, 91, 222, 253
MseI TTAA 1 cut(s) 240
MspI CCGG 1 cut(s) 207
NdeII GATC 1 cut(s) 234
NlaIII CATG 1 cut(s) 250
NlaIV GGNNCC 1 cut(s) 43
NmuCI GTSAC 1 cut(s) 88
PkrI GCNGC 2 cut(s) 205, 301
PleI GAGTC 2 cut(s) 68, 271
PpsI GAGTC 2 cut(s) 68, 271
PspN4I GGNNCC 1 cut(s) 43
SalI GTCGAC 1 cut(s) 250
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 2 cut(s) 204, 300
Sau3AI GATC 1 cut(s) 234
SchI GAGTC 2 cut(s) 68, 272
SetI ASST 6 cut(s) 14, 43, 90, 167, 246, 315
SfcI CTRYAG 1 cut(s) 160
Sse9I AATT 1 cut(s) 115
SsiI CCGC 1 cut(s) 302
SspMI CTAG 1 cut(s) 376
TaaI ACNGT 1 cut(s) 157
TaqI TCGA 1 cut(s) 251
TaqII GACCGA 1 cut(s) 269
TasI AATT 1 cut(s) 115
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 3 cut(s) 160, 202, 218
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 2 cut(s) 203, 299
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 1 cut(s) 181
TspGWI ACGGA 2 cut(s) 107, 258
TspRI CASTG 3 cut(s) 160, 202, 218
XmiI GTMKAC 3 cut(s) 14, 159, 251
XspI CTAG 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.