Prupe.3G297700_v2.0.a1

Early nodulin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0013295
Physical Location & Seq
Forward (+)
26403944 .. 26404846
903 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G297700.1

Sequence Viewer

Length: 504 bp
ATGGCTAACTGCAACATGAACTGTGTCAGAGCAACCCTGTTTTTGTTGACCATTTTCATCTGTTTTGGCCATTTCTCAGTCTCTGCCTTTGAGTTCCAAGTAGGTGGAACCAAAGATTGGGTTGTGCCTCCTACTAATGACAGCAAAATCTACAACGACTGGGCCTCCGGAAACCGGTTCCTAGTAGGCGACACCATCCGTTTTAAGTACAAGAAGGACTCTGTTATGGAGGTGACAGAGGAAGAGTTCAAGAAATGCAATTCAACTCGCCCCAACTTCTTCTCCAACACTGGAAATACAGTTTACCTGTTTGACCACGCCGGCTCTTTCTATTTCATCAGTGGAGCTTCTGGGCACTGCCAGAGAGGACAGCGCATGATCGTTAAGGTGATGTCCTTGGAGGAATCTCCTTCCAGCGACCGCAGGTCTTCTGGCTCTGGTGCTGCGGTTTTCTCAGTCTTTGTTCAGTTTGTTGTGTCCTACGTTGCTTGTCTTCTCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

168

Amino Acids

18.73

Weight (kDa)

8.22

Isoelectric Point (pI)

29.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013295)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14345
fragaria_vesca FvH4_6g52240
malus_domestica MD09G1019300.v1.1 MD17G1019900.v1.1
prunus_persica Prupe.3G297100_v2.0.a1 Prupe.3G297700_v2.0.a1
pyrus_communis pycom111g01600 pycom17g01650
rosa_chinensis RchiOBHm_Chr2g0173791
rosa_laevigata RLG00000022222
rosa_multiflora Rmu_sc0033569.1_g000002
rosa_roxburghii Rroxscaffold_2G00078620
rosa_rugosa Rorug02G0572800
rosa_samantha Rh2AG651800 Rh2BG662500 Rh2CG627200 Rh2DG677600
rosa_wichuraiana Rw2G053510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 414
AccB7I CCANNNNNTGG 1 cut(s) 117
AccIII TCCGGA 1 cut(s) 167
AciI CCGC 2 cut(s) 421, 446
AcoI YGGCCR 1 cut(s) 67
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 2 cut(s) 117, 174
AgeI ACCGGT 1 cut(s) 174
AgsI TTSAA 2 cut(s) 250, 264
AhdI GACNNNNNGTC 1 cut(s) 424
AjuI GAANNNNNNNTTGG 2 cut(s) 100, 132
AluBI AGCT 1 cut(s) 347
AluI AGCT 1 cut(s) 347
Alw26I GTCTC 1 cut(s) 85
AlwNI CAGNNNCTG 1 cut(s) 83
Aor13HI TCCGGA 1 cut(s) 167
AoxI GGCC 2 cut(s) 67, 162
ApeKI GCWGC 1 cut(s) 443
AsiGI ACCGGT 1 cut(s) 174
AspLEI GCGC 1 cut(s) 375
AspS9I GGNCC 1 cut(s) 162
AsuHPI GGTGA 2 cut(s) 244, 400
BaeGI GKGCMC 1 cut(s) 357
BalI TGGCCA 1 cut(s) 69
BbsI GAAGAC 2 cut(s) 420, 485
BbvI GCAGC 1 cut(s) 430
BccI CCATC 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 85
BfaI CTAG 2 cut(s) 182, 502
BfuAI ACCTGC 1 cut(s) 414
BisI GCNGC 1 cut(s) 444
BlsI GCNGC 1 cut(s) 445
BmeRI GACNNNNNGTC 1 cut(s) 424
BmgT120I GGNCC 1 cut(s) 162
BmiI GGNNCC 2 cut(s) 109, 179
BmrI ACTGGG 1 cut(s) 169
BmuI ACTGGG 1 cut(s) 169
BpiI GAAGAC 2 cut(s) 420, 485
BsaJI CCNNGG 1 cut(s) 396
BsaWI WCCGGW 2 cut(s) 167, 174
BsaXI ACNNNNNCTCC 4 cut(s) 149, 179, 266, 296
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 174
Bse118I RCCGGY 2 cut(s) 174, 320
Bse1I ACTGG 2 cut(s) 164, 295
BseAI TCCGGA 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 396
BseGI GGATG 1 cut(s) 195
BseLI CCNNNNNNNGG 2 cut(s) 117, 174
BseMII CTCAG 2 cut(s) 90, 468
BseNI ACTGG 2 cut(s) 164, 295
BseSI GKGCMC 1 cut(s) 357
BseXI GCAGC 1 cut(s) 430
Bsh1285I CGRYCG 1 cut(s) 421
BshFI GGCC 2 cut(s) 69, 164
BshTI ACCGGT 1 cut(s) 174
BsiEI CGRYCG 1 cut(s) 421
BsiSI CCGG 3 cut(s) 168, 175, 321
BslI CCNNNNNNNGG 2 cut(s) 117, 174
BsmAI GTCTC 1 cut(s) 85
BsnI GGCC 2 cut(s) 69, 164
Bsp1286I GDGCHC 1 cut(s) 357
Bsp13I TCCGGA 1 cut(s) 167
Bsp143I GATC 1 cut(s) 378
BspACI CCGC 2 cut(s) 421, 446
BspANI GGCC 2 cut(s) 69, 164
BspCNI CTCAG 2 cut(s) 89, 467
BspEI TCCGGA 1 cut(s) 167
BspLI GGNNCC 2 cut(s) 109, 179
BspMI ACCTGC 1 cut(s) 414
BsrFI RCCGGY 2 cut(s) 174, 320
BsrI ACTGG 2 cut(s) 164, 295
BssAI RCCGGY 2 cut(s) 174, 320
BssECI CCNNGG 1 cut(s) 396
BssMI GATC 1 cut(s) 378
BssT1I CCWWGG 1 cut(s) 396
Bst4CI ACNGT 2 cut(s) 23, 301
Bst6I CTCTTC 1 cut(s) 237
BstC8I GCNNGC 1 cut(s) 322
BstDEI CTNAG 2 cut(s) 76, 454
BstF5I GGATG 1 cut(s) 195
BstHHI GCGC 1 cut(s) 375
BstKTI GATC 1 cut(s) 381
BstMAI GTCTC 1 cut(s) 85
BstMBI GATC 1 cut(s) 378
BstMCI CGRYCG 1 cut(s) 421
BstSLI GKGCMC 1 cut(s) 357
BstV1I GCAGC 1 cut(s) 430
BstV2I GAAGAC 2 cut(s) 420, 485
BstXI CCANNNNNNTGG 1 cut(s) 104
BsuRI GGCC 2 cut(s) 69, 164
BtsCI GGATG 1 cut(s) 195
BtsI GCAGTG 1 cut(s) 355
BtsIMutI CAGTG 3 cut(s) 288, 346, 355
BveI ACCTGC 1 cut(s) 414
Cac8I GCNNGC 1 cut(s) 322
CaiI CAGNNNCTG 1 cut(s) 83
CfoI GCGC 1 cut(s) 375
Cfr10I RCCGGY 2 cut(s) 174, 320
Cfr13I GGNCC 1 cut(s) 162
Csp6I GTAC 1 cut(s) 208
CspAI ACCGGT 1 cut(s) 174
CviAII CATG 2 cut(s) 16, 376
CviJI RGCY 6 cut(s) 5, 69, 164, 324, 347, 435
CviKI_1 RGCY 6 cut(s) 5, 69, 164, 324, 347, 435
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 2 cut(s) 76, 454
DpnI GATC 1 cut(s) 380
DpnII GATC 1 cut(s) 378
DriI GACNNNNNGTC 1 cut(s) 424
EaeI YGGCCR 1 cut(s) 67
Eam1104I CTCTTC 1 cut(s) 237
Eam1105I GACNNNNNGTC 1 cut(s) 424
EarI CTCTTC 1 cut(s) 237
Eco130I CCWWGG 1 cut(s) 396
EcoT14I CCWWGG 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 396
FaeI CATG 2 cut(s) 19, 379
FaiI YATR 3 cut(s) 17, 227, 377
FatI CATG 2 cut(s) 15, 375
Fnu4HI GCNGC 1 cut(s) 444
FokI GGATG 1 cut(s) 182
Fsp4HI GCNGC 1 cut(s) 444
FspBI CTAG 2 cut(s) 182, 502
GlaI GCGC 1 cut(s) 374
GluI GCNGC 1 cut(s) 444
HaeIII GGCC 2 cut(s) 69, 164
HapII CCGG 3 cut(s) 168, 175, 321
HhaI GCGC 1 cut(s) 375
Hin1II CATG 2 cut(s) 19, 379
Hin6I GCGC 1 cut(s) 373
HinP1I GCGC 1 cut(s) 373
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HinfI GANTC 2 cut(s) 218, 404
HpaII CCGG 3 cut(s) 168, 175, 321
HphI GGTGA 2 cut(s) 244, 400
Hpy166II GTNNAC 2 cut(s) 48, 304
Hpy188I TCNGA 1 cut(s) 29
Hpy188III TCNNGA 2 cut(s) 168, 250
Hpy8I GTNNAC 2 cut(s) 48, 304
HpyAV CCTTC 2 cut(s) 208, 420
HpyCH4III ACNGT 2 cut(s) 23, 301
HpyCH4IV ACGT 1 cut(s) 483
HpyCH4V TGCA 2 cut(s) 12, 258
HpyF3I CTNAG 2 cut(s) 76, 454
HpySE526I ACGT 1 cut(s) 483
Hsp92II CATG 2 cut(s) 19, 379
HspAI GCGC 1 cut(s) 373
Kpn2I TCCGGA 1 cut(s) 167
KroI GCCGGC 1 cut(s) 320
KroNI GCCGGC 1 cut(s) 322
Kzo9I GATC 1 cut(s) 378
LmnI GCTCC 1 cut(s) 344
Lsp1109I GCAGC 1 cut(s) 430
MaeI CTAG 2 cut(s) 182, 502
MaeII ACGT 1 cut(s) 483
MaeIII GTNAC 1 cut(s) 232
MalI GATC 1 cut(s) 380
MboI GATC 1 cut(s) 378
MboII GAAGA 5 cut(s) 254, 271, 420, 485, 490
MhlI GDGCHC 1 cut(s) 357
MlsI TGGCCA 1 cut(s) 69
MluCI AATT 1 cut(s) 259
MluNI TGGCCA 1 cut(s) 69
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 6 cut(s) 138, 175, 223, 232, 359, 394
Mox20I TGGCCA 1 cut(s) 69
MroI TCCGGA 1 cut(s) 167
MroNI GCCGGC 1 cut(s) 320
MscI TGGCCA 1 cut(s) 69
MseI TTAA 2 cut(s) 204, 384
Msp20I TGGCCA 1 cut(s) 69
MspI CCGG 3 cut(s) 168, 175, 321
NaeI GCCGGC 1 cut(s) 322
NdeII GATC 1 cut(s) 378
NgoMIV GCCGGC 1 cut(s) 320
NlaIII CATG 2 cut(s) 19, 379
NlaIV GGNNCC 2 cut(s) 109, 179
NmuCI GTSAC 1 cut(s) 232
PdiI GCCGGC 1 cut(s) 322
PfeI GAWTC 1 cut(s) 404
PflMI CCANNNNNTGG 1 cut(s) 117
PinAI ACCGGT 1 cut(s) 174
PkrI GCNGC 1 cut(s) 445
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PspN4I GGNNCC 2 cut(s) 109, 179
PspPI GGNCC 1 cut(s) 162
PstNI CAGNNNCTG 1 cut(s) 83
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SaqAI TTAA 2 cut(s) 204, 384
SatI GCNGC 1 cut(s) 444
Sau3AI GATC 1 cut(s) 378
Sau96I GGNCC 1 cut(s) 162
SchI GAGTC 1 cut(s) 212
SduI GDGCHC 1 cut(s) 357
SetI ASST 7 cut(s) 106, 234, 309, 349, 390, 428, 486
Sse9I AATT 1 cut(s) 259
SsiI CCGC 2 cut(s) 421, 446
SspMI CTAG 2 cut(s) 182, 502
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 2 cut(s) 23, 301
TaiI ACGT 1 cut(s) 486
TasI AATT 1 cut(s) 259
TatI WGTACW 1 cut(s) 207
TfiI GAWTC 1 cut(s) 404
Tru1I TTAA 2 cut(s) 204, 384
Tru9I TTAA 2 cut(s) 204, 384
TscAI CASTG 3 cut(s) 295, 346, 362
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 1 cut(s) 443
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 3 cut(s) 32, 46, 325
TspGWI ACGGA 1 cut(s) 188
TspRI CASTG 3 cut(s) 295, 346, 362
Van91I CCANNNNNTGG 1 cut(s) 117
XspI CTAG 2 cut(s) 182, 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.