RchiOBHm_Chr2g0173791

Early nodulin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0013295
Physical Location & Seq
Forward (+)
86661840 .. 86662503
664 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54098

Sequence Viewer

Length: 510 bp
ATGGCTGCTTTTAAAACAAGTTTGTTCTGGCTCGTCATTTTCATCTCTCTTGGGAACTCGTTGGTTTTCTCAGCTTTTGAGTTCCAGGTTGGTGGAACTCAAGGTTGGATCGTCCCTCCAACCAATGACAGCAAGGTCTACAACGACTGGGCCTCAGAAAACAGGTTCCAAATCGGCAACGCCATCCGTTTTAAGTACAAGAAGGACTCGGTGATGGAGGTGACGGAAGAGGACTACAAGAAGTGCAATTCAAGTCATCCCAACTTCTTCTCCAACAATGGAAACACTGTCTACAGGTTTGACCATTCGGGGTCGTTTTACTTCATCAGTGGGGCAGCCGGACACTGCGAAAAGGGGCAGAGGATGATCGTTAAGGTCATGTCGACCGATGAGGAGTCTCCGTTGGGCAAGAAATCGGCTGGCTATCGTGCTGCGGTTTACGAGCTTGGAGTGTCCAAACTTGTGTTTGTTCAGTTTGTTTTGTTCTATGTTGCTTCTTTAGTGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

169

Amino Acids

19.06

Weight (kDa)

8.48

Isoelectric Point (pI)

17.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 44 - 120 2.4e-19 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013295)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14345
fragaria_vesca FvH4_6g52240
malus_domestica MD09G1019300.v1.1 MD17G1019900.v1.1
prunus_persica Prupe.3G297100_v2.0.a1 Prupe.3G297700_v2.0.a1
pyrus_communis pycom111g01600 pycom17g01650
rosa_chinensis RchiOBHm_Chr2g0173791
rosa_laevigata RLG00000022222
rosa_multiflora Rmu_sc0033569.1_g000002
rosa_roxburghii Rroxscaffold_2G00078620
rosa_rugosa Rorug02G0572800
rosa_samantha Rh2AG651800 Rh2BG662500 Rh2CG627200 Rh2DG677600
rosa_wichuraiana Rw2G053510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 134
AccI GTMKAC 3 cut(s) 138, 291, 383
AciI CCGC 1 cut(s) 434
AclWI GGATC 1 cut(s) 116
AfaI GTAC 1 cut(s) 197
AgsI TTSAA 1 cut(s) 252
AjnI CCWGG 1 cut(s) 84
AjuI GAANNNNNNNTTGG 2 cut(s) 88, 120
AluBI AGCT 2 cut(s) 74, 445
AluI AGCT 2 cut(s) 74, 445
Alw26I GTCTC 1 cut(s) 402
AlwI GGATC 1 cut(s) 116
AoxI GGCC 1 cut(s) 150
ApeKI GCWGC 3 cut(s) 5, 335, 431
AspS9I GGNCC 1 cut(s) 150
AsuHPI GGTGA 2 cut(s) 223, 232
BbvI GCAGC 2 cut(s) 347, 418
BccI CCATC 2 cut(s) 191, 208
BciT130I CCWGG 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 402
BfaI CTAG 1 cut(s) 508
BfmI CTRYAG 1 cut(s) 292
BisI GCNGC 3 cut(s) 6, 336, 432
BlsI GCNGC 3 cut(s) 7, 337, 433
Bme1390I CCNGG 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 150
BmiI GGNNCC 1 cut(s) 167
BmrFI CCNGG 1 cut(s) 86
BmrI ACTGGG 1 cut(s) 157
BmuI ACTGGG 1 cut(s) 157
BpuEI CTTGAG 1 cut(s) 84
BsaXI ACNNNNNCTCC 4 cut(s) 254, 284, 386, 416
Bse1I ACTGG 1 cut(s) 152
BseBI CCWGG 1 cut(s) 86
BseGI GGATG 3 cut(s) 183, 256, 369
BseMII CTCAG 2 cut(s) 84, 168
BseNI ACTGG 1 cut(s) 152
BseRI GAGGAG 1 cut(s) 407
BseXI GCAGC 2 cut(s) 347, 418
Bsh1285I CGRYCG 1 cut(s) 387
BshFI GGCC 1 cut(s) 152
BsiEI CGRYCG 1 cut(s) 387
BsiSI CCGG 1 cut(s) 339
BslFI GGGAC 1 cut(s) 98
BsmAI GTCTC 1 cut(s) 402
BsmFI GGGAC 1 cut(s) 98
BsnI GGCC 1 cut(s) 152
Bsp143I GATC 2 cut(s) 108, 366
BspACI CCGC 1 cut(s) 434
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 2 cut(s) 83, 167
BspLI GGNNCC 1 cut(s) 167
BspPI GGATC 1 cut(s) 116
BsrI ACTGG 1 cut(s) 152
BssMI GATC 2 cut(s) 108, 366
Bst2UI CCWGG 1 cut(s) 86
Bst4CI ACNGT 1 cut(s) 289
Bst6I CTCTTC 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 421
BstDEI CTNAG 2 cut(s) 70, 154
BstF5I GGATG 3 cut(s) 183, 256, 369
BstKTI GATC 2 cut(s) 111, 369
BstMAI GTCTC 1 cut(s) 402
BstMBI GATC 2 cut(s) 108, 366
BstMCI CGRYCG 1 cut(s) 387
BstNI CCWGG 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 84
BstSFI CTRYAG 1 cut(s) 292
BstV1I GCAGC 2 cut(s) 347, 418
BstXI CCANNNNNNTGG 1 cut(s) 92
BsuRI GGCC 1 cut(s) 152
BtsCI GGATG 3 cut(s) 183, 256, 369
BtsI GCAGTG 1 cut(s) 343
BtsIMutI CAGTG 3 cut(s) 285, 334, 343
Cac8I GCNNGC 1 cut(s) 421
Cfr13I GGNCC 1 cut(s) 150
Csp6I GTAC 1 cut(s) 196
CviAII CATG 1 cut(s) 379
CviJI RGCY 8 cut(s) 5, 31, 74, 152, 338, 419, 423, 445
CviKI_1 RGCY 8 cut(s) 5, 31, 74, 152, 338, 419, 423, 445
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 2 cut(s) 70, 154
DpnI GATC 2 cut(s) 110, 368
DpnII GATC 2 cut(s) 108, 366
DraI TTTAAA 1 cut(s) 13
DrdI GACNNNNNNGTC 1 cut(s) 134
DseDI GACNNNNNNGTC 1 cut(s) 134
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 84
FaeI CATG 1 cut(s) 382
FaiI YATR 2 cut(s) 380, 489
FaqI GGGAC 1 cut(s) 98
FatI CATG 1 cut(s) 378
FblI GTMKAC 3 cut(s) 138, 291, 383
Fnu4HI GCNGC 3 cut(s) 6, 336, 432
FokI GGATG 3 cut(s) 170, 243, 376
Fsp4HI GCNGC 3 cut(s) 6, 336, 432
FspBI CTAG 1 cut(s) 508
GluI GCNGC 3 cut(s) 6, 336, 432
HaeIII GGCC 1 cut(s) 152
HapII CCGG 1 cut(s) 339
Hin1II CATG 1 cut(s) 382
HincII GTYRAC 1 cut(s) 384
HindII GTYRAC 1 cut(s) 384
HinfI GANTC 2 cut(s) 206, 395
HpaII CCGG 1 cut(s) 339
HphI GGTGA 2 cut(s) 223, 232
Hpy166II GTNNAC 4 cut(s) 139, 292, 384, 439
Hpy188I TCNGA 1 cut(s) 157
Hpy8I GTNNAC 4 cut(s) 139, 292, 384, 439
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4V TGCA 1 cut(s) 246
HpyF3I CTNAG 2 cut(s) 70, 154
Hsp92II CATG 1 cut(s) 382
Kzo9I GATC 2 cut(s) 108, 366
LpnPI CCDG 8 cut(s) 13, 71, 98, 133, 148, 280, 352, 405
Lsp1109I GCAGC 2 cut(s) 347, 418
MaeI CTAG 1 cut(s) 508
MaeIII GTNAC 1 cut(s) 220
MalI GATC 2 cut(s) 110, 368
MboI GATC 2 cut(s) 108, 366
MboII GAAGA 2 cut(s) 239, 259
MluCI AATT 1 cut(s) 247
MlyI GAGTC 2 cut(s) 200, 404
MmeI TCCRAC 3 cut(s) 86, 143, 297
MnlI CCTC 6 cut(s) 126, 163, 211, 223, 354, 385
MseI TTAA 3 cut(s) 12, 192, 372
MspI CCGG 1 cut(s) 339
MspR9I CCNGG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 86
NdeII GATC 2 cut(s) 108, 366
NlaIII CATG 1 cut(s) 382
NlaIV GGNNCC 1 cut(s) 167
NmuCI GTSAC 1 cut(s) 220
PkrI GCNGC 3 cut(s) 7, 337, 433
PleI GAGTC 2 cut(s) 200, 403
PpsI GAGTC 2 cut(s) 200, 403
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 167
PspPI GGNCC 1 cut(s) 150
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SalI GTCGAC 1 cut(s) 382
SaqAI TTAA 3 cut(s) 12, 192, 372
SatI GCNGC 3 cut(s) 6, 336, 432
Sau3AI GATC 2 cut(s) 108, 366
Sau96I GGNCC 1 cut(s) 150
SchI GAGTC 2 cut(s) 200, 404
ScrFI CCNGG 1 cut(s) 86
SetI ASST 9 cut(s) 76, 90, 106, 138, 167, 222, 299, 378, 447
SfcI CTRYAG 1 cut(s) 292
SmlI CTYRAG 1 cut(s) 99
SmoI CTYRAG 1 cut(s) 99
Sse9I AATT 1 cut(s) 247
SsiI CCGC 1 cut(s) 434
SspMI CTAG 1 cut(s) 508
StyD4I CCNGG 1 cut(s) 84
TaaI ACNGT 1 cut(s) 289
TaqI TCGA 1 cut(s) 383
TaqII GACCGA 1 cut(s) 401
TasI AATT 1 cut(s) 247
TatI WGTACW 1 cut(s) 195
Tru1I TTAA 3 cut(s) 12, 192, 372
Tru9I TTAA 3 cut(s) 12, 192, 372
TscAI CASTG 3 cut(s) 292, 334, 350
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 3 cut(s) 5, 335, 431
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 2 cut(s) 31, 313
TspGWI ACGGA 3 cut(s) 176, 239, 390
TspRI CASTG 3 cut(s) 292, 334, 350
XmiI GTMKAC 3 cut(s) 138, 291, 383
XspI CTAG 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.