Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009369

Physical Location & Seq

Genomic Coordinates Forward (+)

4857147 .. 4859125

Gene Structure 1979 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G15010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1719 bp

ATGAGAGGAATTTTTCTGATTAGATCAAGGCTATCAATCTTTAGGGCTCCTGCAGTTAAGTGTTTAAGATTTAGTAATGTTTTGCCTAGTTTGAGCAATAATTGTATTGTTCGACTGTATATGGAACCTCCCGTAGCTTGTGTGCTTCCTTTAGGTCTGTGTTCTATGTTCTCTACTTCCATAGCTGATTCAGAGCAAGTGGGATTTACTCGGAGTAACATTGAGAAAGATGATGAGAGTGACATTGATCTTGGTTGTAGTATAAGTGATGAGCTTGTTTCAGAGGATGTTGGAAAGATTTCGAAGCTGGTGAAAGATTGTGGGAGTGACCGGAAGGAACTGAGGAACAAGCTTGAGGAATGTGATGTGAAGCCATCAAATGAATTGGTGGTGGAGATTCTTTCTCGAGTTCGTAATGATTGGGAAACTGCTTTCACTTTCTTTGTTTGGGCAGGGAAGCAGCAAGGTTATGTTCGTTCTGTTCGTGAGTATCACTCTATGATCTCGATTCTTGGTAAAATGAGGAAGTTTGATACAGCTTGGACTTTGATTGATGAGATGAGAAAGTTTAGCCCTTCTCTTGTGAACTCACAGACACTTTTGATCATGATTAGGAAGTATTGTGCGGTACATGATGTTGGGAAAGCCATAAACACGTTCCATGCCTACAAAAGATTCAAACTTGAAATGGGGATTGATGATTTTCAGAGTTTGCTCTCGGCTCTTTGTAGGTATAAGAATGTTTCAGATGCTGGGCATTTGATCTTCTGTAACAAGGATAAGTATCCGTTTGACGCCAAAAGTTTCAACATTGTTCTCAATGGATGGTGTAACGTGATTGGTAGCCCACGGGAGGCTGAAAGGGTCTGGATGGAGATGGGAAATGTTGGAGTCAAACATGATGTTGTGTCTTATTCAAGCATGATATCTTGCTATTCGAAAGGTGGTAGCTTGAATAAGGTTCTCAAACTTTTTGATAGGATGAAGAAAGAGTGTATAGAGCCTGATAGAAAAGTGTACAACGCGGTGGTTCACGCTCTTGCCAAAGCTAGCTTTGTCTCCGAGGCGAGAAATTTAATGAAGACAATGGAGGAGGAGAAAGGGATTGAGCCCAATGTTGTTACTTACAACTCTCTCATCAAACCTCTATGCAAGGCTAGAAAAACCGAAGAGGCTAAACAGGTTTTCGATGAGATGCTGGAGAAAGGACTCTTCCCAACAATCCGTACATATCATGCGTTTATGCGGATTCTAAGAACAGGAGAGGAGGTTTTTGAGCTATTAGCTAAAATGAGAAAGATGGGCTGTGAACCAACTGTGGAGACATACATAATGCTGATCCGTAAGTTATGTAGGTGGCGCGATTTCGATAATGTGTTATTGTTGTGGGATGAGATGAAGGAAAAGACCGTTGGTCCAGACCTTAGCTCATACATTGTGATGATACATGGTCTGTTCTTGAATGGTAAGATAGAAGAAGCGTATGGGTACTATAAAGAGATGAAGGACAAGGGTATGAGACCAAATGAAAATGTTGAAGATATGATTCAAAGCTGGTTTTCAGGAAAACAGTATGCAGAGCAGCGGATAACAGATTCGAAAGGGGAGGTCAATAAAGGAGCTATTGTAAAAAAATCTGAAAGAGAAAAGAACTTTCTCCAGCAGCCTGAGGTGAGAAAGGTTGTTAGAGAGCATGGATATTCGTTTTGGGATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

572

Amino Acids

65.95

Weight (kDa)

8.59

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	267 - 314	1.3e-07	PPR repeat family
TPR_24	PF23276	282 - 398	4e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	289 - 346	1e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	301 - 349	1.2e-10	PPR repeat family
PPR	PF01535	303 - 332	9.2e-08	PPR repeat
PPR_long	PF17177	313 - 415	1.1e-09	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	339 - 385	1.2e-09	PPR repeat family
PPR_3	PF13812	365 - 416	8.2e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	367 - 399	1.1e-12	PPR repeat
PPR_2	PF13041	371 - 416	2.2e-13	PPR repeat family
PPR	PF01535	374 - 404	1.4e-07	PPR repeat
PPR_2	PF13041	421 - 452	1.7e-06	PPR repeat family
PPR_2	PF13041	473 - 510	2.6e-07	PPR repeat family
PPR	PF01535	477 - 505	8.8e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0009369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15010
fragaria_vesca	FvH4_1g14610 FvH4_6g48380 FvH4_6g48380 FvH4_6g48380 FvH4_6g48380 FvH4_6g48380
malus_domestica	MD12G1000700.v1.1
prunus_persica	Prupe.7G001100_v2.0.a1 Prupe.7G001100_v2.0.a1 Prupe.7G001100_v2.0.a1
pyrus_communis	pycom12g00060
rosa_chinensis	RchiOBHm_Chr3g0497531
rosa_laevigata	RLG00000022455
rosa_multiflora	Rmu_sc0000093.1_g000015
rosa_roxburghii	Rroxscaffold_6G00387950
rosa_rugosa	Rorug03G0293400
rosa_samantha	Rh3AG337300 Rh3BG375700 Rh3CG371700 Rh3DG372200
rosa_wichuraiana	Rw0G018510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	1025, 1362
AciI	CCGC	4 cut(s)	626, 1025, 1246, 1585
AclWI	GGATC	1 cut(s)	1333
AcsI	RAATTY	2 cut(s)	9, 1072
AcyI	GRCGYC	1 cut(s)	795
AfaI	GTAC	4 cut(s)	630, 1019, 1228, 1490
AfiI	CCNNNNNNNGG	1 cut(s)	853
AflIII	ACRYGT	1 cut(s)	654
AgsI	TTSAA	8 cut(s)	679, 686, 808, 918, 955, 1462, 1538, 1550
AhdI	GACNNNNNGTC	1 cut(s)	1413
AjuI	GAANNNNNNNTTGG	2 cut(s)	1395, 1427
Alw26I	GTCTC	3 cut(s)	1063, 1316, 1513
AlwI	GGATC	1 cut(s)	1333
AlwNI	CAGNNNCTG	1 cut(s)	752
Ama87I	CYCGRG	1 cut(s)	405
ApeKI	GCWGC	3 cut(s)	460, 1582, 1663
ApoI	RAATTY	2 cut(s)	9, 1072
Asp700I	GAANNNNTTC	1 cut(s)	298
AspLEI	GCGC	1 cut(s)	1362
AspS9I	GGNCC	1 cut(s)	1415
AsuHPI	GGTGA	2 cut(s)	322, 1684
AsuII	TTCGAA	3 cut(s)	302, 938, 1598
AsuNHI	GCTAGC	1 cut(s)	1049
AvaI	CYCGRG	1 cut(s)	405
AvaII	GGWCC	1 cut(s)	1415
AxyI	CCTNAGG	1 cut(s)	1668
BanII	GRGCYC	2 cut(s)	49, 1113
BbsI	GAAGAC	1 cut(s)	1088
BbvI	GCAGC	3 cut(s)	472, 1594, 1675
BccI	CCATC	5 cut(s)	382, 819, 865, 871, 1294
BciVI	GTATCC	1 cut(s)	795
BclI	TGATCA	1 cut(s)	603
BcoDI	GTCTC	3 cut(s)	1063, 1316, 1513
BfaI	CTAG	3 cut(s)	87, 1050, 1158
BfmI	CTRYAG	1 cut(s)	51
BfuI	GTATCC	1 cut(s)	795
BisI	GCNGC	3 cut(s)	461, 1583, 1664
BlsI	GCNGC	3 cut(s)	462, 1584, 1665
Bme18I	GGWCC	1 cut(s)	1415
BmeRI	GACNNNNNGTC	1 cut(s)	1413
BmeT110I	CYCGRG	1 cut(s)	405
BmgT120I	GGNCC	1 cut(s)	1415
BmiI	GGNNCC	2 cut(s)	48, 126
BmsI	GCATC	2 cut(s)	739, 1185
BmtI	GCTAGC	1 cut(s)	1053
BpiI	GAAGAC	1 cut(s)	1088
BplI	GAGNNNNNCTC	2 cut(s)	479, 511
BpmI	CTGGAG	2 cut(s)	1220, 1643
Bpu10I	CCTNAGC	1 cut(s)	1424
Bpu14I	TTCGAA	3 cut(s)	302, 938, 1598
BpuEI	CTTGAG	1 cut(s)	374
BsaBI	GATNNNNATC	1 cut(s)	783
BsaHI	GRCGYC	1 cut(s)	795
BsaI	GGTCTC	1 cut(s)	1513
BsaJI	CCNNGG	2 cut(s)	848, 1062
BsaWI	WCCGGW	1 cut(s)	330
BsaXI	ACNNNNNCTCC	4 cut(s)	1254, 1284, 1611, 1641
Bsc4I	CCNNNNNNNGG	1 cut(s)	853
Bse21I	CCTNAGG	1 cut(s)	1668
Bse8I	GATNNNNATC	1 cut(s)	783
BseDI	CCNNGG	2 cut(s)	848, 1062
BseGI	GGATG	6 cut(s)	292, 830, 876, 987, 1396, 1717
BseJI	GATNNNNATC	1 cut(s)	783
BseLI	CCNNNNNNNGG	1 cut(s)	853
BseMII	CTCAG	2 cut(s)	332, 1659
BseRI	GAGGAG	3 cut(s)	1106, 1109, 1280
BseXI	GCAGC	3 cut(s)	472, 1594, 1675
BseYI	CCCAGC	1 cut(s)	752
Bsh1236I	CGCG	2 cut(s)	1025, 1362
BsiHKCI	CYCGRG	1 cut(s)	405
BsiSI	CCGG	1 cut(s)	331
BslI	CCNNNNNNNGG	1 cut(s)	853
BsmAI	GTCTC	3 cut(s)	1063, 1316, 1513
Bso31I	GGTCTC	1 cut(s)	1513
BsoBI	CYCGRG	1 cut(s)	405
Bsp119I	TTCGAA	3 cut(s)	302, 938, 1598
Bsp1286I	GDGCHC	2 cut(s)	49, 1113
Bsp1407I	TGTACA	1 cut(s)	1017
Bsp143I	GATC	6 cut(s)	23, 247, 501, 603, 762, 1338
BspACI	CCGC	4 cut(s)	626, 1025, 1246, 1585
BspCNI	CTCAG	2 cut(s)	333, 1660
BspFNI	CGCG	2 cut(s)	1025, 1362
BspHI	TCATGA	1 cut(s)	606
BspLI	GGNNCC	2 cut(s)	48, 126
BspMAI	CTGCAG	1 cut(s)	55
BspOI	GCTAGC	1 cut(s)	1053
BspPI	GGATC	1 cut(s)	1333
BspT104I	TTCGAA	3 cut(s)	302, 938, 1598
BspTNI	GGTCTC	1 cut(s)	1513
BsrGI	TGTACA	1 cut(s)	1017
BssECI	CCNNGG	2 cut(s)	848, 1062
BssMI	GATC	6 cut(s)	23, 247, 501, 603, 762, 1338
BssNI	GRCGYC	1 cut(s)	795
Bst4CI	ACNGT	4 cut(s)	117, 1318, 1411, 1572
Bst6I	CTCTTC	2 cut(s)	1164, 1217
BstACI	GRCGYC	1 cut(s)	795
BstAUI	TGTACA	1 cut(s)	1017
BstBI	TTCGAA	3 cut(s)	302, 938, 1598
BstC8I	GCNNGC	1 cut(s)	1051
BstDEI	CTNAG	4 cut(s)	341, 1253, 1424, 1668
BstDSI	CCRYGG	1 cut(s)	848
BstF5I	GGATG	6 cut(s)	292, 830, 876, 987, 1396, 1717
BstFNI	CGCG	2 cut(s)	1025, 1362
BstHHI	GCGC	1 cut(s)	1362
BstKTI	GATC	6 cut(s)	26, 250, 504, 606, 765, 1341
BstMAI	GTCTC	3 cut(s)	1063, 1316, 1513
BstMBI	GATC	6 cut(s)	23, 247, 501, 603, 762, 1338
BstSFI	CTRYAG	1 cut(s)	51
BstUI	CGCG	2 cut(s)	1025, 1362
BstV1I	GCAGC	3 cut(s)	472, 1594, 1675
BstV2I	GAAGAC	1 cut(s)	1088
Bsu36I	CCTNAGG	1 cut(s)	1668
BsuI	GTATCC	1 cut(s)	795
BtgI	CCRYGG	1 cut(s)	848
BtsCI	GGATG	6 cut(s)	292, 830, 876, 987, 1396, 1717
Cac8I	GCNNGC	1 cut(s)	1051
CaiI	CAGNNNCTG	1 cut(s)	752
CciI	TCATGA	1 cut(s)	606
CfoI	GCGC	1 cut(s)	1362
Cfr13I	GGNCC	1 cut(s)	1415
CseI	GACGC	1 cut(s)	803
Csp6I	GTAC	4 cut(s)	629, 1018, 1227, 1489
CviAII	CATG	8 cut(s)	607, 632, 662, 899, 922, 1235, 1448, 1694
CviQI	GTAC	4 cut(s)	629, 1018, 1227, 1489
DdeI	CTNAG	4 cut(s)	341, 1253, 1424, 1668
DpnI	GATC	6 cut(s)	25, 249, 503, 605, 764, 1340
DpnII	GATC	6 cut(s)	23, 247, 501, 603, 762, 1338
DriI	GACNNNNNGTC	1 cut(s)	1413
Eam1104I	CTCTTC	2 cut(s)	1164, 1217
Eam1105I	GACNNNNNGTC	1 cut(s)	1413
EarI	CTCTTC	2 cut(s)	1164, 1217
Eco24I	GRGCYC	2 cut(s)	49, 1113
Eco31I	GGTCTC	1 cut(s)	1513
Eco32I	GATATC	1 cut(s)	927
Eco47I	GGWCC	1 cut(s)	1415
Eco81I	CCTNAGG	1 cut(s)	1668
Eco88I	CYCGRG	1 cut(s)	405
EcoRV	GATATC	1 cut(s)	927
EcoT38I	GRGCYC	2 cut(s)	49, 1113
FaeI	CATG	8 cut(s)	610, 635, 665, 902, 925, 1238, 1451, 1697
FatI	CATG	8 cut(s)	606, 631, 661, 898, 921, 1234, 1447, 1693
FbaI	TGATCA	1 cut(s)	603
Fnu4HI	GCNGC	3 cut(s)	461, 1583, 1664
FokI	GGATG	5 cut(s)	299, 837, 883, 994, 1403
FriOI	GRGCYC	2 cut(s)	49, 1113
Fsp4HI	GCNGC	3 cut(s)	461, 1583, 1664
FspBI	CTAG	3 cut(s)	87, 1050, 1158
GlaI	GCGC	1 cut(s)	1361
GluI	GCNGC	3 cut(s)	461, 1583, 1664
GsaI	CCCAGC	1 cut(s)	756
GsuI	CTGGAG	2 cut(s)	1220, 1643
HapII	CCGG	1 cut(s)	331
HgaI	GACGC	1 cut(s)	803
HhaI	GCGC	1 cut(s)	1362
Hin1I	GRCGYC	1 cut(s)	795
Hin1II	CATG	8 cut(s)	610, 635, 665, 902, 925, 1238, 1451, 1697
Hin6I	GCGC	1 cut(s)	1360
HinP1I	GCGC	1 cut(s)	1360
HindIII	AAGCTT	1 cut(s)	350
HinfI	GANTC	9 cut(s)	188, 397, 508, 675, 891, 1209, 1249, 1546, 1595
HpaII	CCGG	1 cut(s)	331
HphI	GGTGA	2 cut(s)	322, 1684
Hpy166II	GTNNAC	4 cut(s)	586, 1018, 1033, 1310
Hpy188I	TCNGA	8 cut(s)	18, 193, 213, 283, 708, 748, 1063, 1639
Hpy188III	TCNNGA	8 cut(s)	405, 485, 505, 607, 868, 1418, 1459, 1563
Hpy8I	GTNNAC	4 cut(s)	586, 1018, 1033, 1310
HpyAV	CCTTC	4 cut(s)	328, 585, 1393, 1498
HpyCH4III	ACNGT	4 cut(s)	117, 1318, 1411, 1572
HpyCH4IV	ACGT	2 cut(s)	656, 834
HpyCH4V	TGCA	3 cut(s)	53, 1152, 1577
HpyF3I	CTNAG	4 cut(s)	341, 1253, 1424, 1668
HpySE526I	ACGT	2 cut(s)	656, 834
Hsp92I	GRCGYC	1 cut(s)	795
Hsp92II	CATG	8 cut(s)	610, 635, 665, 902, 925, 1238, 1451, 1697
HspAI	GCGC	1 cut(s)	1360
Ksp22I	TGATCA	1 cut(s)	603
Kzo9I	GATC	6 cut(s)	23, 247, 501, 603, 762, 1338
LmnI	GCTCC	2 cut(s)	52, 1619
Lsp1109I	GCAGC	3 cut(s)	472, 1594, 1675
LweI	GCATC	2 cut(s)	739, 1185
MaeI	CTAG	3 cut(s)	87, 1050, 1158
MaeII	ACGT	2 cut(s)	656, 834
MaeIII	GTNAC	6 cut(s)	215, 239, 326, 770, 830, 1120
MalI	GATC	6 cut(s)	25, 249, 503, 605, 764, 1340
MboI	GATC	6 cut(s)	23, 247, 501, 603, 762, 1338
MboII	GAAGA	7 cut(s)	757, 997, 1093, 1181, 1204, 1487, 1550
MhlI	GDGCHC	2 cut(s)	49, 1113
MluCI	AATT	4 cut(s)	9, 100, 383, 1072
MlyI	GAGTC	2 cut(s)	900, 1203
MmeI	TCCRAC	2 cut(s)	271, 868
MroXI	GAANNNNTTC	1 cut(s)	298
MseI	TTAA	3 cut(s)	57, 65, 1076
MslI	CAYNNNNRTG	1 cut(s)	1439
MspA1I	CMGCKG	1 cut(s)	1585
MspI	CCGG	1 cut(s)	331
MvnI	CGCG	2 cut(s)	1025, 1362
NdeII	GATC	6 cut(s)	23, 247, 501, 603, 762, 1338
NheI	GCTAGC	1 cut(s)	1049
NlaIII	CATG	8 cut(s)	610, 635, 665, 902, 925, 1238, 1451, 1697
NlaIV	GGNNCC	2 cut(s)	48, 126
NmeAIII	GCCGAG	1 cut(s)	698
NmuCI	GTSAC	2 cut(s)	239, 326
NspV	TTCGAA	3 cut(s)	302, 938, 1598
PaeR7I	CTCGAG	1 cut(s)	405
PagI	TCATGA	1 cut(s)	606
PcsI	WCGNNNNNNNCGW	1 cut(s)	481
PdmI	GAANNNNTTC	1 cut(s)	298
PfeI	GAWTC	7 cut(s)	188, 397, 508, 675, 1249, 1546, 1595
PkrI	GCNGC	3 cut(s)	462, 1584, 1665
PleI	GAGTC	2 cut(s)	899, 1203
PpsI	GAGTC	2 cut(s)	899, 1203
PspFI	CCCAGC	1 cut(s)	752
PspN4I	GGNNCC	2 cut(s)	48, 126
PspPI	GGNCC	1 cut(s)	1415
PstI	CTGCAG	1 cut(s)	55
PstNI	CAGNNNCTG	1 cut(s)	752
RsaI	GTAC	4 cut(s)	630, 1019, 1228, 1490
RsaNI	GTAC	4 cut(s)	629, 1018, 1227, 1489
RseI	CAYNNNNRTG	1 cut(s)	1439
SaqAI	TTAA	3 cut(s)	57, 65, 1076
SatI	GCNGC	3 cut(s)	461, 1583, 1664
Sau3AI	GATC	6 cut(s)	23, 247, 501, 603, 762, 1338
Sau96I	GGNCC	1 cut(s)	1415
SchI	GAGTC	2 cut(s)	900, 1203
SduI	GDGCHC	2 cut(s)	49, 1113
SfaNI	GCATC	2 cut(s)	739, 1185
SfcI	CTRYAG	1 cut(s)	51
Sfr274I	CTCGAG	1 cut(s)	405
SfuI	TTCGAA	3 cut(s)	302, 938, 1598
SinI	GGWCC	1 cut(s)	1415
SlaI	CTCGAG	1 cut(s)	405
SmiMI	CAYNNNNRTG	1 cut(s)	1439
SmlI	CTYRAG	2 cut(s)	353, 405
SmoI	CTYRAG	2 cut(s)	353, 405
Sse9I	AATT	4 cut(s)	9, 100, 383, 1072
SsiI	CCGC	4 cut(s)	626, 1025, 1246, 1585
SspMI	CTAG	3 cut(s)	87, 1050, 1158
TaaI	ACNGT	4 cut(s)	117, 1318, 1411, 1572
TaiI	ACGT	2 cut(s)	659, 837
TaqI	TCGA	8 cut(s)	112, 302, 406, 506, 938, 1188, 1368, 1598
TasI	AATT	4 cut(s)	9, 100, 383, 1072
TatI	WGTACW	1 cut(s)	1017
TfiI	GAWTC	7 cut(s)	188, 397, 508, 675, 1249, 1546, 1595
Tru1I	TTAA	3 cut(s)	57, 65, 1076
Tru9I	TTAA	3 cut(s)	57, 65, 1076
TseFI	GTSAC	2 cut(s)	239, 326
TseI	GCWGC	3 cut(s)	460, 1582, 1663
Tsp45I	GTSAC	2 cut(s)	239, 326
TspDTI	ATGAA	6 cut(s)	396, 998, 1094, 1412, 1517, 1542
TspGWI	ACGGA	3 cut(s)	777, 1214, 1331
VpaK11BI	GGWCC	1 cut(s)	1415
XapI	RAATTY	2 cut(s)	9, 1072
XhoI	CTCGAG	1 cut(s)	405
XmnI	GAANNNNTTC	1 cut(s)	298
XspI	CTAG	3 cut(s)	87, 1050, 1158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.